mRNA_P-wetherbeei_contig58253.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58253.1.1
Unique NamemRNA_P-wetherbeei_contig58253.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58253.1.1 vs. uniprot
Match: UPI001C3CB4B5 (DUF58 domain-containing protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3CB4B5)

HSP 1 Score: 278 bits (710), Expect = 7.200e-92
Identity = 138/168 (82.14%), Postives = 157/168 (93.45%), Query Frame = 1
Query:    1 SMAFGTHAQTKADLVREVLAGLGVVMRRRGDRLGVVATAAGDIDLVRPPRADRRGLVAALAAVDRVVPAEGRDGRTDLARAVSALGRIARHRGAVIVVSDFPLQPGLEQALGGLGRRHELIAIEVRDRRERDLPNVGPVHLRDLETGRRRLVDTSDPRFQTRFAAAVE 504
            SM +GT  QTKA+L REVLAG+GVV+RRRGDRLGV+ATA GDIDL+RPPRADRRGLVAA+AAVDR+ P EGR GRTDL RA+S+LGRIARHRGAV+++SDFPL PGLEQA+G LGRRHE+IA+EVRDRRERDLP+VGPVHLRDLETGRRRLVDT+DPRF+TRFAAAVE
Sbjct:   76 SMEYGTTVQTKAELAREVLAGVGVVLRRRGDRLGVMATATGDIDLMRPPRADRRGLVAAIAAVDRIRPVEGRGGRTDLVRAISSLGRIARHRGAVVLISDFPLLPGLEQAIGALGRRHEVIAVEVRDRRERDLPDVGPVHLRDLETGRRRLVDTADPRFRTRFAAAVE 243          
BLAST of mRNA_P-wetherbeei_contig58253.1.1 vs. uniprot
Match: UPI001C3D3E20 (DUF58 domain-containing protein n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3D3E20)

HSP 1 Score: 256 bits (654), Expect = 2.150e-83
Identity = 130/168 (77.38%), Postives = 148/168 (88.10%), Query Frame = 1
Query:    1 SMAFGTHAQTKADLVREVLAGLGVVMRRRGDRLGVVATAAGDIDLVRPPRADRRGLVAALAAVDRVVPAEGRDGRTDLARAVSALGRIARHRGAVIVVSDFPLQPGLEQALGGLGRRHELIAIEVRDRRERDLPNVGPVHLRDLETGRRRLVDTSDPRFQTRFAAAVE 504
            SMAFGT   TK +L +EVLAG+G V+RRRGDRLGVVAT AGDIDLVRPPRADRRG+VAA+AAV R+ P +G  GRTDL RAVSA+GRIARHRGAV++VSD P+QPGLE+A+G LGRRHE+IA+EVRDRRER LP+VGPV LRDLETG RRLVDTSDPRF+  FAAAVE
Sbjct:   76 SMAFGTRGGTKLELAQEVLAGVGAVLRRRGDRLGVVATRAGDIDLVRPPRADRRGVVAAIAAVARLAPPQGEGGRTDLVRAVSAMGRIARHRGAVVIVSDLPMQPGLERAVGALGRRHEVIAVEVRDRRERHLPDVGPVRLRDLETGARRLVDTSDPRFRDGFAAAVE 243          
BLAST of mRNA_P-wetherbeei_contig58253.1.1 vs. uniprot
Match: A0A538GAW1_9ACTN (DUF58 domain-containing protein n=2 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538GAW1_9ACTN)

HSP 1 Score: 117 bits (292), Expect = 9.820e-29
Identity = 73/167 (43.71%), Postives = 97/167 (58.08%), Query Frame = 1
Query:    1 SMAFGTHAQTKADLVREVLAGLGVVMRRRGDRLGVVATAAGDIDLVRPPRADRRGLVAALAAVDRVVPAEGRDGRTDLARAVSALGRIARHRGAVIVVSDFPLQPGLEQALGGLGRRHELIAIEVRDRRERDLPNVGPVHLRDLETGRRRLVDTSDPRFQTRFAAAV 501
            SM FGT  + KAD+   V   +G +  RRG+RLG+V    G+  ++ P R  R GL+  LAA  R  PA    G T L   ++ +   AR R  V++VSDF         L GL  RH+++AIE+RD RE++LPNVGP+ L D ETGR+  VDT   R + RFAAA 
Sbjct:  104 SMEFGTADRRKADVAEGVAIAVGHLATRRGNRLGIVTFGDGESSVL-PARQGRMGLLGLLAAF-RHEPARAGMGATSLGEGIAGVATHARQRSLVVLVSDFRGPSDWRHPLLGLASRHDVLAIEIRDPREQELPNVGPLWLVDPETGRQLRVDTRSARLRARFAAAA 268          
BLAST of mRNA_P-wetherbeei_contig58253.1.1 vs. uniprot
Match: A0A7W0SA59_9ACTN (DUF58 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W0SA59_9ACTN)

HSP 1 Score: 114 bits (284), Expect = 1.100e-27
Identity = 72/169 (42.60%), Postives = 95/169 (56.21%), Query Frame = 1
Query:    1 SMAFGTHAQTKADLVREVLAGLGVVMRRRGDRLGVVATAAGDIDLVRPP--RADRRGLVAALAAVDRVVPAEGRDGRTDLARAVSALGRIARHRGAVIVVSDFPLQPGLEQALGGLGRRHELIAIEVRDRRERDLPNVGPVHLRDLETGRRRLVDTSDPRFQTRFAAAV 501
            SM FGT  + KAD+   V   LG +  RRG+RLG +    G I L  P   R    GL+  +A ++        D R+ L RA+    RIAR RG V VVSD+  Q    + +G L  RHE+IA+E+RD RE++LPNVG + L D ETGR+  VDT D + +  FA A 
Sbjct:   84 SMNFGTTKRRKADVAEGVALALGHLASRRGNRLGTMTFGDGKIQLATPSGGRRGMLGLLHTIAHLEGPQATADADARSSLGRALGRAARIARTRGTVWVVSDWRSQTDWRRPMGQLVHRHEVIAVEIRDPREQELPNVGDLWLVDPETGRQMRVDTGDRKLRRDFADAA 252          
BLAST of mRNA_P-wetherbeei_contig58253.1.1 vs. uniprot
Match: A0A537W8A1_9ACTN (DUF58 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537W8A1_9ACTN)

HSP 1 Score: 113 bits (283), Expect = 2.070e-27
Identity = 75/168 (44.64%), Postives = 99/168 (58.93%), Query Frame = 1
Query:    1 SMAFGTHAQTKADLVREVLAGLGVVMRRRGDRLGVVATAAGDID-LVRPPRADRRGLVAALAAVDRVVPAEGRDGRTDLARAVSALGRIARHRGAVIVVSDFPLQPGLEQALGGLGRRHELIAIEVRDRRERDLPNVGPVHLRDLETGRRRLVDTSDPRFQTRFAAAV 501
            SM FGT  + KAD+   V   +G V  RRG+RLGVV    GD +  + PPRA R GL+  LAA+ R    +G  G T L  A+   G +AR R  V+VVSDF       + L  L  RH+++A+E+RD RE++LPN G + L D ETGR+  VDT   R + +FAAA 
Sbjct:  104 SMEFGTADRRKADVAEGVAIAIGHVATRRGNRLGVVTF--GDAEPRMTPPRAGRIGLLGMLAAL-RDERTDGAVGPTSLGEALLRAGGLARQRSIVVVVSDFRGSRDWRRPLLELAGRHDVVAVEIRDPREQELPNAGALWLVDPETGRQLRVDTRSERLRAKFAAAA 268          
BLAST of mRNA_P-wetherbeei_contig58253.1.1 vs. uniprot
Match: A0A538J3B1_9ACTN (DUF58 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538J3B1_9ACTN)

HSP 1 Score: 113 bits (282), Expect = 2.900e-27
Identity = 72/168 (42.86%), Postives = 95/168 (56.55%), Query Frame = 1
Query:    1 SMAFGTHAQTKADLVREVLAGLGVVMRRRGDRLGVVATAAGDIDLVRPPRADRRGLVAALAAVDRVVPAEGRDGRTDLARAVSALGRIARHRGAVIVVSDFPLQPGLEQALGGLGRRHELIAIEVRDRRERDLPNVGPVHLRDLETGRRRLVDTSDPRFQTRFAAAVE 504
            SM FGT  + KAD+   V    G V  RRG+RLG+V T   D     PPR  R GL+  L A+ R    +G  G T L  A +  G  AR R  V++VSDF       + L  L  RH+++A+E+RD RE++LPN G + L D ETGR+  VDT D + + RFAAA +
Sbjct:  104 SMLFGTADRRKADVAEGVSIAFGHVATRRGNRLGIV-TFGDDRPRALPPRQGRGGLLGLLGAL-RNETGDGTVGATSLGEAANRTGAFARQRALVVIVSDFRGPLDWRRPLLELAGRHDVVAVEIRDPREQELPNAGELWLVDPETGRQLRVDTRDDKLRRRFAAAAD 269          
BLAST of mRNA_P-wetherbeei_contig58253.1.1 vs. uniprot
Match: A0A538JY50_9ACTN (DUF58 domain-containing protein n=2 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538JY50_9ACTN)

HSP 1 Score: 112 bits (280), Expect = 5.810e-27
Identity = 74/167 (44.31%), Postives = 95/167 (56.89%), Query Frame = 1
Query:    1 SMAFGTHAQTKADLVREVLAGLGVVMRRRGDRLGVVATAAGDIDLVRPPRADRRGLVAALAAVDRVVPAEGRDGRTDLARAVSALGRIARHRGAVIVVSDFPLQPGLEQALGGLGRRHELIAIEVRDRRERDLPNVGPVHLRDLETGRRRLVDTSDPRFQTRFAAAV 501
            SM FGT  + KAD+   V   +G V  RRG+RLG+V T         PPR  R GL+  L+A+ R    +GR G T L   +   G +AR R  VIVVSDF       + L  L  RH++IAIE+RD RE++LPN G + L D ETGR+   DT   R ++RFAAA 
Sbjct:  104 SMEFGTADRRKADVAEGVAIAVGHVATRRGNRLGLV-TFGDAAPRTLPPRQGRMGLIGLLSAL-REEGGDGRIGATSLGEGLRRTGSLARQRSVVIVVSDFRGPLDWRRPLLELAGRHDVIAIEIRDPREQELPNAGVLWLVDPETGRQLRADTRSERLRSRFAAAA 268          
BLAST of mRNA_P-wetherbeei_contig58253.1.1 vs. uniprot
Match: A0A537ZNK3_9ACTN (DUF58 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537ZNK3_9ACTN)

HSP 1 Score: 111 bits (278), Expect = 1.060e-26
Identity = 72/167 (43.11%), Postives = 96/167 (57.49%), Query Frame = 1
Query:    1 SMAFGTHAQTKADLVREVLAGLGVVMRRRGDRLGVVATAAGDIDLVRPPRADRRGLVAALAAVDRVVPAEGRDGRTDLARAVSALGRIARHRGAVIVVSDFPLQPGLEQALGGLGRRHELIAIEVRDRRERDLPNVGPVHLRDLETGRRRLVDTSDPRFQTRFAAAV 501
            SM FGT  + KAD+   V   +G V  RRG+RLGVV        ++ PP+A R GL+  LAA+     A+G  G T L  A+   G +A+ R  V+VVSDF         L  L  RH+++A+E+RD RE++LPN G + L D ETGR+  VDT   R + RFAAA 
Sbjct:  102 SMEFGTADRRKADVAEGVAIAIGHVATRRGNRLGVVTFGDAQPRML-PPKAGRVGLLGMLAALRE--EADGGTGATSLGEALLRTGALAQQRSIVVVVSDFRGPRDWRGPLLRLAGRHDVVAVEIRDPREQELPNAGTLWLVDPETGRQLRVDTRSERLRARFAAAA 265          
BLAST of mRNA_P-wetherbeei_contig58253.1.1 vs. uniprot
Match: A0A7C3K875_9FIRM (DUF58 domain-containing protein n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C3K875_9FIRM)

HSP 1 Score: 111 bits (277), Expect = 1.300e-26
Identity = 66/168 (39.29%), Postives = 94/168 (55.95%), Query Frame = 1
Query:    1 SMAFGTHAQTKADLVREVLAGLGVVMRRRGDRLGVVATAAGDIDLVRPPRADRRGLVAALAAVDRVVPAEGRDGRTDLARAVSALGRIARHRGAVIVVSDFPLQPGLEQALGGLGRRHELIAIEVRDRRERDLPNVGPVHLRDLETGRRRLVDTSDPRFQTRFAAAVE 504
            SM FGT    K ++  E  A    ++ R GD++G +A     + ++ PPRA R   +  L  + R    EG  G TDLA A+   GR+ R R  V ++SDF   PG   AL  L RRH++IA+ +RD  E DLP+VG +  RD ETG++  VDTSDPR +  +   ++
Sbjct:   86 SMGFGTRRHLKREVAAEFAAVAAYIITRHGDKVGCLAFPGRTLPVI-PPRAGRVQALRILQVLQRTPEGEG--GPTDLAAALRHAGRLLRRRRLVFLISDFLAAPGWGTALRDLSRRHDVIAVWIRDPAEEDLPDVGVIPTRDPETGQQTWVDTSDPRVRAAYRELIQ 250          
BLAST of mRNA_P-wetherbeei_contig58253.1.1 vs. uniprot
Match: A0A7W1K152_9ACTN (VWA domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W1K152_9ACTN)

HSP 1 Score: 109 bits (273), Expect = 1.480e-26
Identity = 73/167 (43.71%), Postives = 93/167 (55.69%), Query Frame = 1
Query:    1 SMAFGTHAQTKADLVREVLAGLGVVMRRRGDRLGVVATAAGDIDLVRPPRADRRGLVAALAAVDRVVPAEGRDGRTDLARAVSALGRIARHRGAVIVVSDFPLQPGLEQALGGLGRRHELIAIEVRDRRERDLPNVGPVHLRDLETGRRRLVDTSDPRFQTRFAAAV 501
            SM FGT  + KAD+   V   +G V  RRG+RLG+V T   D     PPR  R GL+  L+A+ R  P     G T L  A+   G  A+ R  VIVVSDF       + L  L  RHE++A+E+RD RE++LPN G + L D ETGR+   DT   R + RFAAA 
Sbjct:   34 SMLFGTADRRKADVAEGVAIAVGHVATRRGNRLGLV-TFGDDRPRTLPPRQGRLGLLGLLSAL-REEPVTDGAGATSLGEALRRTGARAQQRSVVIVVSDFRGPQDWRRPLLELAGRHEVVAVEIRDPREQELPNAGVLWLVDPETGRQLRADTRSERLRARFAAAA 198          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58253.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3CB4B57.200e-9282.14DUF58 domain-containing protein n=1 Tax=Miltoncost... [more]
UPI001C3D3E202.150e-8377.38DUF58 domain-containing protein n=1 Tax=Miltoncost... [more]
A0A538GAW1_9ACTN9.820e-2943.71DUF58 domain-containing protein n=2 Tax=Actinomyce... [more]
A0A7W0SA59_9ACTN1.100e-2742.60DUF58 domain-containing protein n=1 Tax=Actinomyce... [more]
A0A537W8A1_9ACTN2.070e-2744.64DUF58 domain-containing protein n=1 Tax=Actinomyce... [more]
A0A538J3B1_9ACTN2.900e-2742.86DUF58 domain-containing protein n=1 Tax=Actinomyce... [more]
A0A538JY50_9ACTN5.810e-2744.31DUF58 domain-containing protein n=2 Tax=Actinomyce... [more]
A0A537ZNK3_9ACTN1.060e-2643.11DUF58 domain-containing protein n=1 Tax=Actinomyce... [more]
A0A7C3K875_9FIRM1.300e-2639.29DUF58 domain-containing protein n=1 Tax=Firmicutes... [more]
A0A7W1K152_9ACTN1.480e-2643.71VWA domain-containing protein n=1 Tax=Actinomyceti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58253contigP-wetherbeei_contig58253:1..504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1283299.AUKG01000001_gene2830
PFAMsDUF58
Model size504
Max annot lvl84995|Rubrobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.65e-27
EggNOG OGsCOG1721@1|root,COG1721@2|Bacteria,2GKSJ@201174|Actinobacteria,4CRYP@84995|Rubrobacteria
DescriptionProtein of unknown function DUF58
Cds size501
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186863.0853248-CDS-P-wetherbeei_contig58253:0..5011683186863.0853248-CDS-P-wetherbeei_contig58253:0..501Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58253 1..501 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186863.097438-UTR-P-wetherbeei_contig58253:501..5041683186863.097438-UTR-P-wetherbeei_contig58253:501..504Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig58253 502..504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58253.1.1prot_P-wetherbeei_contig58253.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58253 1..501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58253.1.1

>prot_P-wetherbeei_contig58253.1.1 ID=prot_P-wetherbeei_contig58253.1.1|Name=mRNA_P-wetherbeei_contig58253.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp
MAFGTHAQTKADLVREVLAGLGVVMRRRGDRLGVVATAAGDIDLVRPPRA
DRRGLVAALAAVDRVVPAEGRDGRTDLARAVSALGRIARHRGAVIVVSDF
PLQPGLEQALGGLGRRHELIAIEVRDRRERDLPNVGPVHLRDLETGRRRL
VDTSDPRFQTRFAAAVE
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mRNA from alignment at P-wetherbeei_contig58253:1..504-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58253.1.1 ID=mRNA_P-wetherbeei_contig58253.1.1|Name=mRNA_P-wetherbeei_contig58253.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig58253:1..504- (Phaeothamnion wetherbeei SAG_119_79)
TCCATGGCATTCGGAACCCATGCCCAGACCAAGGCCGACCTCGTGCGCGA GGTGCTCGCCGGCCTGGGCGTGGTGATGCGCCGCCGGGGCGATCGCCTGG GCGTGGTGGCCACCGCGGCCGGCGACATCGACCTGGTGCGCCCGCCGCGG GCCGATCGGCGTGGACTGGTGGCCGCCCTCGCCGCCGTCGACCGGGTGGT CCCCGCCGAGGGCCGGGACGGCCGCACCGACCTGGCGCGCGCCGTGAGCG CCCTGGGGCGCATCGCCCGGCACCGCGGCGCCGTGATCGTGGTCTCGGAC TTTCCCCTCCAGCCGGGCCTGGAGCAGGCGCTCGGCGGGCTCGGGCGTCG CCACGAGCTGATCGCCATCGAGGTGCGCGATCGGCGTGAGCGCGACCTGC CGAACGTCGGCCCGGTGCATCTGCGCGATCTGGAGACCGGTCGGCGCCGC CTGGTGGACACCTCCGACCCGCGCTTCCAGACCCGCTTCGCCGCAGCGGT CGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58253:1..504-

>mRNA_P-wetherbeei_contig58253.1.1 ID=mRNA_P-wetherbeei_contig58253.1.1|Name=mRNA_P-wetherbeei_contig58253.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig58253:1..504- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCATTCGGAACCCATGCCCAGACCAAGGCCGACCTCGTGCGCGAGGT
GCTCGCCGGCCTGGGCGTGGTGATGCGCCGCCGGGGCGATCGCCTGGGCG
TGGTGGCCACCGCGGCCGGCGACATCGACCTGGTGCGCCCGCCGCGGGCC
GATCGGCGTGGACTGGTGGCCGCCCTCGCCGCCGTCGACCGGGTGGTCCC
CGCCGAGGGCCGGGACGGCCGCACCGACCTGGCGCGCGCCGTGAGCGCCC
TGGGGCGCATCGCCCGGCACCGCGGCGCCGTGATCGTGGTCTCGGACTTT
CCCCTCCAGCCGGGCCTGGAGCAGGCGCTCGGCGGGCTCGGGCGTCGCCA
CGAGCTGATCGCCATCGAGGTGCGCGATCGGCGTGAGCGCGACCTGCCGA
ACGTCGGCCCGGTGCATCTGCGCGATCTGGAGACCGGTCGGCGCCGCCTG
GTGGACACCTCCGACCCGCGCTTCCAGACCCGCTTCGCCGCAGCGGTCGA
G
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