mRNA_P-wetherbeei_contig58248.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58248.1.1
Unique NamemRNA_P-wetherbeei_contig58248.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58248.1.1 vs. uniprot
Match: A0A1F4LFN1_9BURK (Serine/threonine protein phosphatase n=3 Tax=Burkholderiales TaxID=80840 RepID=A0A1F4LFN1_9BURK)

HSP 1 Score: 285 bits (730), Expect = 2.340e-93
Identity = 144/168 (85.71%), Postives = 156/168 (92.86%), Query Frame = 1
Query:    1 TDCVSPDDTNETVRELFARNESLETVAVVEQGHPIGLINRNLFMEHYARPFARDVFGRKSCIAFMDKAPVVVDAATPIEVLVKAAVDAGGRVLKDGFITTAHGQYLGLGTGYGLMKAMSDIESEKTRQLLSSISYASLIQRSHLAESDRVLQAHMPDHGLLWEPRDVV 504
            T+ VSP+ TNE VR LFAR+E+ ETVAVVE+G PIGLINRN FMEHYARPFARDVFGRKSCIAFMDK+PVVVD  TPIE LVK AV+AG RVL+DGFITTAHGQYLGLGTGYGLMKAMSDIE+EKTRQLLSSISYASLIQRSHLAESDRVL+AH+PDHGLLW+PRDVV
Sbjct:   11 TEPVSPEHTNEEVRALFARHEAQETVAVVEEGRPIGLINRNTFMEHYARPFARDVFGRKSCIAFMDKSPVVVDRDTPIETLVKIAVEAGTRVLQDGFITTAHGQYLGLGTGYGLMKAMSDIEAEKTRQLLSSISYASLIQRSHLAESDRVLRAHLPDHGLLWQPRDVV 178          
BLAST of mRNA_P-wetherbeei_contig58248.1.1 vs. uniprot
Match: UPI000E738C95 (SpoIIE family protein phosphatase n=1 Tax=Simplicispira lacusdiani TaxID=2213010 RepID=UPI000E738C95)

HSP 1 Score: 281 bits (720), Expect = 1.600e-91
Identity = 143/168 (85.12%), Postives = 153/168 (91.07%), Query Frame = 1
Query:    1 TDCVSPDDTNETVRELFARNESLETVAVVEQGHPIGLINRNLFMEHYARPFARDVFGRKSCIAFMDKAPVVVDAATPIEVLVKAAVDAGGRVLKDGFITTAHGQYLGLGTGYGLMKAMSDIESEKTRQLLSSISYASLIQRSHLAESDRVLQAHMPDHGLLWEPRDVV 504
            TD VSP+ TNE VR LFAR+E+LETVAVVE G PIGLINRN FMEHYARPFARDVFGRKSCIAFMDK PVVVD  TPIE LVK AV+AG RVL+DGFITTA G+YLGLGTGYGLMKAMSDIE+EKTRQLLSSISYASLIQRSHLAESDRVL+ H+PDHGLLW+PRDVV
Sbjct:   36 TDPVSPEHTNEDVRALFARSETLETVAVVENGRPIGLINRNTFMEHYARPFARDVFGRKSCIAFMDKTPVVVDRDTPIESLVKTAVEAGTRVLQDGFITTAEGRYLGLGTGYGLMKAMSDIEAEKTRQLLSSISYASLIQRSHLAESDRVLRTHLPDHGLLWQPRDVV 203          
BLAST of mRNA_P-wetherbeei_contig58248.1.1 vs. uniprot
Match: A0A5C7NV67_9BURK (Serine/threonine protein phosphatase n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A5C7NV67_9BURK)

HSP 1 Score: 254 bits (649), Expect = 9.450e-81
Identity = 125/165 (75.76%), Postives = 146/165 (88.48%), Query Frame = 1
Query:   10 VSPDDTNETVRELFARNESLETVAVVEQGHPIGLINRNLFMEHYARPFARDVFGRKSCIAFMDKAPVVVDAATPIEVLVKAAVDAGGRVLKDGFITTAHGQYLGLGTGYGLMKAMSDIESEKTRQLLSSISYASLIQRSHLAESDRVLQAHMPDHGLLWEPRDVV 504
            V+P+ ++E VRELF + ESL+T+AVVE G PIGLINRN FME YARPF+R+++GRKSC  FMD  PVVV+ +TPIE+LVKAAV AG RVL++GFITT  GQY G+GTG+GLMKAMSDIE+EKTRQLL+SISYASLIQRSHLAESDRVLQ H+PDHGLLWEPRDVV
Sbjct:   39 VTPEHSSEDVRELFMQQESLQTLAVVEGGRPIGLINRNAFMEQYARPFSRELYGRKSCTTFMDTDPVVVETSTPIELLVKAAVGAGNRVLREGFITTTRGQYAGMGTGFGLMKAMSDIEAEKTRQLLASISYASLIQRSHLAESDRVLQQHLPDHGLLWEPRDVV 203          
BLAST of mRNA_P-wetherbeei_contig58248.1.1 vs. uniprot
Match: UPI0013897515 (SpoIIE family protein phosphatase n=1 Tax=unclassified Acidovorax TaxID=2684926 RepID=UPI0013897515)

HSP 1 Score: 252 bits (644), Expect = 5.060e-80
Identity = 127/165 (76.97%), Postives = 142/165 (86.06%), Query Frame = 1
Query:   10 VSPDDTNETVRELFARNESLETVAVVEQGHPIGLINRNLFMEHYARPFARDVFGRKSCIAFMDKAPVVVDAATPIEVLVKAAVDAGGRVLKDGFITTAHGQYLGLGTGYGLMKAMSDIESEKTRQLLSSISYASLIQRSHLAESDRVLQAHMPDHGLLWEPRDVV 504
            V+P+ TN+ VR+ FA NE  ET+AVVE G PIGLINR++FME YARPFARDVFGRKSCIAFMDK+PV+VD   PIE LV+ AV+AG RVLKDGFITTA GQYLGLGTGY LMKAMSDIE+EKTRQLLSSI YASLIQRSHLAESD  L+  +PDH LLW+PRDVV
Sbjct:   39 VTPEHTNDDVRQRFALNEVQETLAVVENGQPIGLINRHIFMEQYARPFARDVFGRKSCIAFMDKSPVIVDRGLPIETLVRTAVEAGTRVLKDGFITTAEGQYLGLGTGYALMKAMSDIEAEKTRQLLSSIGYASLIQRSHLAESDLALRDGLPDHALLWQPRDVV 203          
BLAST of mRNA_P-wetherbeei_contig58248.1.1 vs. uniprot
Match: A0A1F4KF32_9BURK (CBS domain-containing protein n=1 Tax=Burkholderiales bacterium RIFCSPLOWO2_12_FULL_61_40 TaxID=1797566 RepID=A0A1F4KF32_9BURK)

HSP 1 Score: 237 bits (605), Expect = 1.430e-74
Identity = 112/167 (67.07%), Postives = 147/167 (88.02%), Query Frame = 1
Query:    4 DCVSPDDTNETVRELFARNESLETVAVVEQGHPIGLINRNLFMEHYARPFARDVFGRKSCIAFMDKAPVVVDAATPIEVLVKAAVDAGGRVLKDGFITTAHGQYLGLGTGYGLMKAMSDIESEKTRQLLSSISYASLIQRSHLAESDRVLQAHMPDHGLLWEPRDVV 504
            +  S D TNE +RE+FAR E + T+AVVE G PIGL+NR++FME YA+P+ARD++GRKSCIAFMDK+P++V  +TP+EVLVKAAVD+GG+VL DGFITT +G+Y G+GTG+GL+KAMS+IE+EKTRQL++SI+YASLIQRSHL ESD+VL+  + D+GL+W+PRDVV
Sbjct:    6 EAASADTTNEQLREMFARIEGVSTIAVVENGRPIGLVNRHVFMEQYAKPYARDLYGRKSCIAFMDKSPLIVPVSTPVEVLVKAAVDSGGKVLDDGFITTLNGEYHGVGTGFGLVKAMSEIEAEKTRQLMASINYASLIQRSHLVESDQVLRHDIGDYGLIWKPRDVV 172          
BLAST of mRNA_P-wetherbeei_contig58248.1.1 vs. uniprot
Match: UPI001E754480 (SpoIIE family protein phosphatase n=1 Tax=Delftia tsuruhatensis TaxID=180282 RepID=UPI001E754480)

HSP 1 Score: 219 bits (557), Expect = 1.170e-66
Identity = 107/165 (64.85%), Postives = 132/165 (80.00%), Query Frame = 1
Query:   10 VSPDDTNETVRELFARNESLETVAVVEQGHPIGLINRNLFMEHYARPFARDVFGRKSCIAFMDKAPVVVDAATPIEVLVKAAVDAGGRVLKDGFITTAHGQYLGLGTGYGLMKAMSDIESEKTRQLLSSISYASLIQRSHLAESDRVLQAHMPDHGLLWEPRDVV 504
            ++P+ +NE V  LF+    LET+AVV +  P+GLINR  FME YARPFARDVFGR+SC+ F D AP+VV A+ P++ LV+ A+  G RVLKDGFITT  G+Y G+GTG+ LM AMSDIE++KTRQL++SI YASLIQRSHL ESDRVL + +PDHGLLWEPRDVV
Sbjct:   49 IAPEASNEDVHRLFSEQPLLETLAVVAEDRPLGLINRQRFMEQYARPFARDVFGRRSCLVFTDTAPMVVAASLPMDQLVQQALAGGSRVLKDGFITTQEGRYAGIGTGHALMAAMSDIEADKTRQLMASIDYASLIQRSHLIESDRVLASQLPDHGLLWEPRDVV 213          
BLAST of mRNA_P-wetherbeei_contig58248.1.1 vs. uniprot
Match: A0A210VYL8_9BURK (PPM-type phosphatase domain-containing protein n=45 Tax=Bacteria TaxID=2 RepID=A0A210VYL8_9BURK)

HSP 1 Score: 212 bits (539), Expect = 5.460e-64
Identity = 105/165 (63.64%), Postives = 127/165 (76.97%), Query Frame = 1
Query:   10 VSPDDTNETVRELFARNESLETVAVVEQGHPIGLINRNLFMEHYARPFARDVFGRKSCIAFMDKAPVVVDAATPIEVLVKAAVDAGGRVLKDGFITTAHGQYLGLGTGYGLMKAMSDIESEKTRQLLSSISYASLIQRSHLAESDRVLQAHMPDHGLLWEPRDVV 504
            + P+ +NE V  LF+    LET+AVV    P+GLINR  FME YARPFARDVFGR+SC+ F D AP+VV    PI+ LV+ A+ +G RVLKDGFIT   G+Y G+GTG+ LM AMSDIE++KTRQL++SI YASLIQRSHL ESDRVL + + DHGLLWEPRDVV
Sbjct:   49 IPPEASNEDVHRLFSEQPMLETLAVVADDRPLGLINRQRFMEQYARPFARDVFGRRSCLVFTDTAPMVVADGLPIDQLVQQALASGSRVLKDGFITVEEGRYAGIGTGHALMAAMSDIEADKTRQLMASIDYASLIQRSHLVESDRVLASQLADHGLLWEPRDVV 213          
BLAST of mRNA_P-wetherbeei_contig58248.1.1 vs. uniprot
Match: A0A0N1B9J0_9PROT (PPM-type phosphatase domain-containing protein n=1 Tax=beta proteobacterium AAP99 TaxID=1523428 RepID=A0A0N1B9J0_9PROT)

HSP 1 Score: 199 bits (507), Expect = 1.250e-59
Identity = 98/165 (59.39%), Postives = 124/165 (75.15%), Query Frame = 1
Query:   10 VSPDDTNETVRELFARNESLETVAVVEQGHPIGLINRNLFMEHYARPFARDVFGRKSCIAFMDKAPVVVDAATPIEVLVKAAVDAGGRVLKDGFITTAHGQYLGLGTGYGLMKAMSDIESEKTRQLLSSISYASLIQRSHLAESDRVLQAHMPDHGLLWEPRDVV 504
            V+P+  NE +RE+FA +E LE + VV  G P+GL+NRN+FME YARPF RD+FGR+ C+AF  K P+VV+  TPIE +V+ AV    RV+KDGF+ T  GQYLGLG+G  L+KAMSDIE EKTRQLL+SI YAS IQRS L  SD  ++A++P   L W+PRDVV
Sbjct:   28 VTPEVNNEALREMFAADEQLEVLTVVRDGQPMGLVNRNVFMEQYARPFGRDLFGREGCLAFAYKQPLVVEETTPIETIVREAVAPNSRVMKDGFVVTRGGQYLGLGSGRALIKAMSDIEQEKTRQLLASIEYASAIQRSGLRASDETIKANLPQAFLSWQPRDVV 192          
BLAST of mRNA_P-wetherbeei_contig58248.1.1 vs. uniprot
Match: A0A7Y5PJE6_9BURK (SpoIIE family protein phosphatase n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A7Y5PJE6_9BURK)

HSP 1 Score: 197 bits (500), Expect = 1.770e-58
Identity = 100/166 (60.24%), Postives = 125/166 (75.30%), Query Frame = 1
Query:   10 VSPDDTNETVRELFARNESLETVAVVEQGHPIGLINRNLFMEHYARPFARDVFGRKSCIAFMDKAPVVVDAATPIEVLVKAAVDAGGRVLKDGFITT-AHGQYLGLGTGYGLMKAMSDIESEKTRQLLSSISYASLIQRSHLAESDRVLQAHMPDHGLLWEPRDVV 504
            ++ + TNE VR  FA NE+   +AVV+ G PIGLINRN+FME YARPFARDVFGR+SCIA+M K P+VVD    +E L+  AV  G RVLKDGFIT  A G Y G+GTG+ L++AMS +E+EKTRQLL SI YAS IQR++L  S+  +Q  +P HGLLW+PRD+V
Sbjct:   36 LTSEHTNEEVRSFFAENEAQNNIAVVDDGRPIGLINRNMFMEAYARPFARDVFGRRSCIAWMHKEPLVVDEDMALEPLIATAVSTGERVLKDGFITVDAQGIYTGIGTGFSLVQAMSALEAEKTRQLLDSIHYASRIQRAYLKASNESVQRGLPGHGLLWQPRDIV 201          
BLAST of mRNA_P-wetherbeei_contig58248.1.1 vs. uniprot
Match: UPI000247216D (SpoIIE family protein phosphatase n=1 Tax=Holophaga foetida TaxID=35839 RepID=UPI000247216D)

HSP 1 Score: 192 bits (489), Expect = 7.920e-57
Identity = 99/166 (59.64%), Postives = 127/166 (76.51%), Query Frame = 1
Query:   10 VSPDDTNETVRELFARNESLETVAVV-EQGHPIGLINRNLFMEHYARPFARDVFGRKSCIAFMDKAPVVVDAATPIEVLVKAAVDAGGRVLKDGFITTAHGQYLGLGTGYGLMKAMSDIESEKTRQLLSSISYASLIQRSHLAESDRVLQAHMPDHGLLWEPRDVV 504
            V  + TNE VR+  A++ + E +AVV E G PIGLINR++F+E YARP+AR++FGR+SCIA+MDK  ++VDA TPIE LVK AV  G +VLKDGFITT +G Y GLGTG+ LM++M  +E+EK+RQ+L SI YAS IQRSHL  S   L A + DH L+W+PRDVV
Sbjct:   40 VESEMTNEEVRQCLAQDAAAEALAVVNEDGCPIGLINRSIFLEAYARPYARELFGRRSCIAWMDKDALIVDAETPIEELVKRAVAKGAKVLKDGFITTRNGLYAGLGTGFALMESMEALEAEKSRQILQSIEYASTIQRSHLRSSQEDLGAGLTDHALVWQPRDVV 205          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58248.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4LFN1_9BURK2.340e-9385.71Serine/threonine protein phosphatase n=3 Tax=Burkh... [more]
UPI000E738C951.600e-9185.12SpoIIE family protein phosphatase n=1 Tax=Simplici... [more]
A0A5C7NV67_9BURK9.450e-8175.76Serine/threonine protein phosphatase n=1 Tax=Burkh... [more]
UPI00138975155.060e-8076.97SpoIIE family protein phosphatase n=1 Tax=unclassi... [more]
A0A1F4KF32_9BURK1.430e-7467.07CBS domain-containing protein n=1 Tax=Burkholderia... [more]
UPI001E7544801.170e-6664.85SpoIIE family protein phosphatase n=1 Tax=Delftia ... [more]
A0A210VYL8_9BURK5.460e-6463.64PPM-type phosphatase domain-containing protein n=4... [more]
A0A0N1B9J0_9PROT1.250e-5959.39PPM-type phosphatase domain-containing protein n=1... [more]
A0A7Y5PJE6_9BURK1.770e-5860.24SpoIIE family protein phosphatase n=1 Tax=Burkhold... [more]
UPI000247216D7.920e-5759.64SpoIIE family protein phosphatase n=1 Tax=Holophag... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58248contigP-wetherbeei_contig58248:2..505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog398578.Daci_1587
PFAMsHAMP,SpoIIE,dCache_1
Model size504
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.68e-65
EggNOG OGsCOG2208@1|root,COG2208@2|Bacteria,1MXJQ@1224|Proteobacteria,2VN2D@28216|Betaproteobacteria,4AC64@80864|Comamonadaceae
DescriptionPFAM Stage II sporulation E family protein
Cds size504
COG categoryKT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186862.9695897-CDS-P-wetherbeei_contig58248:1..5051683186862.9695897-CDS-P-wetherbeei_contig58248:1..505Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58248 2..505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58248.1.1prot_P-wetherbeei_contig58248.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58248 2..505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58248.1.1

>prot_P-wetherbeei_contig58248.1.1 ID=prot_P-wetherbeei_contig58248.1.1|Name=mRNA_P-wetherbeei_contig58248.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
TDCVSPDDTNETVRELFARNESLETVAVVEQGHPIGLINRNLFMEHYARP
FARDVFGRKSCIAFMDKAPVVVDAATPIEVLVKAAVDAGGRVLKDGFITT
AHGQYLGLGTGYGLMKAMSDIESEKTRQLLSSISYASLIQRSHLAESDRV
LQAHMPDHGLLWEPRDVV
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mRNA from alignment at P-wetherbeei_contig58248:2..505-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58248.1.1 ID=mRNA_P-wetherbeei_contig58248.1.1|Name=mRNA_P-wetherbeei_contig58248.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig58248:2..505- (Phaeothamnion wetherbeei SAG_119_79)
ACCGACTGTGTCTCGCCCGACGACACCAACGAAACCGTGCGCGAGCTGTT TGCGCGCAACGAGTCGCTGGAGACGGTGGCCGTGGTCGAGCAGGGCCACC CCATCGGGCTGATCAACCGCAACCTCTTCATGGAGCACTACGCCCGCCCG TTTGCGCGCGACGTGTTCGGGCGCAAGAGCTGCATCGCCTTCATGGACAA GGCGCCCGTGGTGGTGGACGCCGCCACCCCCATCGAGGTGCTGGTGAAGG CCGCCGTGGATGCGGGCGGGCGCGTGCTCAAGGACGGTTTCATCACCACG GCCCACGGCCAGTACCTGGGCCTGGGGACGGGCTACGGGCTGATGAAGGC CATGTCGGACATCGAGTCGGAAAAGACCCGACAGCTGCTGTCCAGCATCA GCTACGCGAGCCTGATCCAGCGCTCGCACCTGGCCGAGTCCGACCGCGTG CTGCAGGCCCACATGCCCGACCATGGCCTGCTGTGGGAGCCGCGCGACGT GGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58248:2..505-

>mRNA_P-wetherbeei_contig58248.1.1 ID=mRNA_P-wetherbeei_contig58248.1.1|Name=mRNA_P-wetherbeei_contig58248.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig58248:2..505- (Phaeothamnion wetherbeei SAG_119_79)
ACCGACTGTGTCTCGCCCGACGACACCAACGAAACCGTGCGCGAGCTGTT
TGCGCGCAACGAGTCGCTGGAGACGGTGGCCGTGGTCGAGCAGGGCCACC
CCATCGGGCTGATCAACCGCAACCTCTTCATGGAGCACTACGCCCGCCCG
TTTGCGCGCGACGTGTTCGGGCGCAAGAGCTGCATCGCCTTCATGGACAA
GGCGCCCGTGGTGGTGGACGCCGCCACCCCCATCGAGGTGCTGGTGAAGG
CCGCCGTGGATGCGGGCGGGCGCGTGCTCAAGGACGGTTTCATCACCACG
GCCCACGGCCAGTACCTGGGCCTGGGGACGGGCTACGGGCTGATGAAGGC
CATGTCGGACATCGAGTCGGAAAAGACCCGACAGCTGCTGTCCAGCATCA
GCTACGCGAGCCTGATCCAGCGCTCGCACCTGGCCGAGTCCGACCGCGTG
CTGCAGGCCCACATGCCCGACCATGGCCTGCTGTGGGAGCCGCGCGACGT
GGTG
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