mRNA_P-wetherbeei_contig58246.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58246.1.1
Unique NamemRNA_P-wetherbeei_contig58246.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58246.1.1 vs. uniprot
Match: UPI00084A2A0D (DUF1501 domain-containing protein n=1 Tax=Candidatus Marithrix sp. Canyon 246 TaxID=1827136 RepID=UPI00084A2A0D)

HSP 1 Score: 112 bits (281), Expect = 3.000e-26
Identity = 61/165 (36.97%), Postives = 96/165 (58.18%), Query Frame = 1 
Query:    4 NSNIIALTTSPRRFTFGPNPLALSDLSQIDNRRMIPAGNMREIALAEVDPSSDYYGFGDKLKRGLKQYYAERRATVSRRSVYYQFFDHERKLRELGSVVDARLATVPVPAALSSLFDDGS---VTGYQLALQTRNLYDALACNDQLDICVASMDFDGWDSHNNQR 489
            + N++ALT+SPR F FGPNP   ++LSQ  N  +I A + R + L       +   +  ++ R L+ YYA +R  ++  S+Y +F D E K R+ G  +D RL+  P+P+ +  L+  GS   +    L  Q RNLYD+LA ND +++  AS+   GWD+H +Q+
Sbjct:  174 DGNVLALTSSPRNFCFGPNP---NNLSQRSNANVISAADTRTMRLYHPSAGKEKT-YAGRIARSLRAYYAAKREEIASDSIYKRFTDMESKSRKFGDAIDDRLSQFPIPSNIEGLYTAGSSNVLNNRGLGKQIRNLYDSLAVNDIVNLRAASLAMGGWDTHKDQK 334
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BLAST of mRNA_P-wetherbeei_contig58246.1.1 vs. uniprot
Match: A0A516SJ16_9BURK (DUF1501 domain-containing protein n=2 Tax=Chitinimonas arctica TaxID=2594795 RepID=A0A516SJ16_9BURK)

HSP 1 Score: 92.0 bits (227), Expect = 4.580e-19
Identity = 55/162 (33.95%), Postives = 88/162 (54.32%), Query Frame = 1 
Query:    4 NSNIIALTTSPRRFTFGPNPLALSDLSQIDNRRMIPAGNMREIALAE-VDPSSDYYGFGDKLKRGLKQYYAERRATVSRRSVYYQFFDHERKLRELGSVVDARLATVPVPAALSSLFDD---GSVTGYQLALQTRNLYDALACNDQLDICVASMDFDGWDSH 477
            +S I++++ +P  F FGP+P   +D     N R++   N R +AL++ VD   + Y     +   L+ YY  + A +++  VY +F   ER LR+ GS ++  L   P+PA +S L+       +    +  Q RNLYDA+   D  D+ VAS+ +DGWDSH
Sbjct:   62 SSRIVSMSAAPSSFCFGPHP---TDPLDHRNDRLLNMKNSRGLALSDAVDLPGNAYD--RSMANSLRNYYESKAAKLAQSDVYGRFIQSERSLRQFGSSMNRALDAQPIPAPISKLYTGLPPSRLNNANMGEQIRNLYDAIRNRDLFDMRVASLCYDGWDSH 218
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58246.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI00084A2A0D3.000e-2636.97DUF1501 domain-containing protein n=1 Tax=Candidat... [more]
A0A516SJ16_9BURK4.580e-1933.95DUF1501 domain-containing protein n=2 Tax=Chitinim... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58246contigP-wetherbeei_contig58246:1..489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size489
Hectar predicted targeting categoryother localisation
Exons1
Cds size489
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186862.9455721-CDS-P-wetherbeei_contig58246:0..4891683186862.9455721-CDS-P-wetherbeei_contig58246:0..489Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58246 1..489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58246.1.1prot_P-wetherbeei_contig58246.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58246 1..489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58246.1.1

>prot_P-wetherbeei_contig58246.1.1 ID=prot_P-wetherbeei_contig58246.1.1|Name=mRNA_P-wetherbeei_contig58246.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
ANSNIIALTTSPRRFTFGPNPLALSDLSQIDNRRMIPAGNMREIALAEVD
PSSDYYGFGDKLKRGLKQYYAERRATVSRRSVYYQFFDHERKLRELGSVV
DARLATVPVPAALSSLFDDGSVTGYQLALQTRNLYDALACNDQLDICVAS
MDFDGWDSHNNQR
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mRNA from alignment at P-wetherbeei_contig58246:1..489+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58246.1.1 ID=mRNA_P-wetherbeei_contig58246.1.1|Name=mRNA_P-wetherbeei_contig58246.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig58246:1..489+ (Phaeothamnion wetherbeei SAG_119_79)
GCTAACAGCAATATCATCGCGCTCACCACTTCACCACGACGCTTCACCTT
CGGGCCAAATCCGCTTGCGCTCAGTGACCTCAGCCAGATCGACAATCGGC
GCATGATCCCGGCTGGCAATATGCGCGAGATTGCGCTCGCCGAGGTCGAC
CCGAGCTCGGACTATTATGGCTTCGGCGACAAACTCAAACGCGGTCTCAA
ACAGTACTACGCCGAACGTCGCGCGACGGTAAGCAGGCGCTCGGTCTACT
ACCAGTTCTTCGATCACGAGCGGAAATTGCGCGAACTCGGCTCGGTCGTC
GATGCGCGACTCGCGACCGTGCCGGTGCCGGCGGCGCTCAGTAGCTTGTT
CGACGATGGCAGCGTGACCGGTTATCAGCTGGCGCTACAGACCCGCAATC
TCTACGACGCACTGGCCTGCAACGATCAGCTGGACATCTGTGTGGCCTCA
ATGGATTTCGACGGATGGGATTCGCATAACAATCAGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58246:1..489+

>mRNA_P-wetherbeei_contig58246.1.1 ID=mRNA_P-wetherbeei_contig58246.1.1|Name=mRNA_P-wetherbeei_contig58246.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig58246:1..489+ (Phaeothamnion wetherbeei SAG_119_79)
GCTAACAGCAATATCATCGCGCTCACCACTTCACCACGACGCTTCACCTT
CGGGCCAAATCCGCTTGCGCTCAGTGACCTCAGCCAGATCGACAATCGGC
GCATGATCCCGGCTGGCAATATGCGCGAGATTGCGCTCGCCGAGGTCGAC
CCGAGCTCGGACTATTATGGCTTCGGCGACAAACTCAAACGCGGTCTCAA
ACAGTACTACGCCGAACGTCGCGCGACGGTAAGCAGGCGCTCGGTCTACT
ACCAGTTCTTCGATCACGAGCGGAAATTGCGCGAACTCGGCTCGGTCGTC
GATGCGCGACTCGCGACCGTGCCGGTGCCGGCGGCGCTCAGTAGCTTGTT
CGACGATGGCAGCGTGACCGGTTATCAGCTGGCGCTACAGACCCGCAATC
TCTACGACGCACTGGCCTGCAACGATCAGCTGGACATCTGTGTGGCCTCA
ATGGATTTCGACGGATGGGATTCGCATAACAATCAGCGC
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