mRNA_P-wetherbeei_contig5823.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5823.5.1
Unique NamemRNA_P-wetherbeei_contig5823.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5823.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5823contigP-wetherbeei_contig5823:2413..3265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size562
Hectar predicted targeting categorymitochondrion
Exons2
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186862.768047-UTR-P-wetherbeei_contig5823:2412..25001683186862.768047-UTR-P-wetherbeei_contig5823:2412..2500Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5823 2413..2500 +
1683186862.803159-UTR-P-wetherbeei_contig5823:3154..32651683186862.803159-UTR-P-wetherbeei_contig5823:3154..3265Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5823 3155..3265 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186862.7771173-CDS-P-wetherbeei_contig5823:2500..26641683186862.7771173-CDS-P-wetherbeei_contig5823:2500..2664Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5823 2501..2664 +
1683186862.7852929-CDS-P-wetherbeei_contig5823:2955..31541683186862.7852929-CDS-P-wetherbeei_contig5823:2955..3154Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5823 2956..3154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5823.5.1prot_P-wetherbeei_contig5823.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5823 2501..3154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5823.5.1

>prot_P-wetherbeei_contig5823.5.1 ID=prot_P-wetherbeei_contig5823.5.1|Name=mRNA_P-wetherbeei_contig5823.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
MTAPSGRLCRRMISARHARSPGAAILSAPRAWLGRLNHFTACTDVGCGVC
GPDGRPSLRPETGRGTAQNRGSAGESAVNEGSCWRVLTQRKEKERQRSAV
LWTTGGKSPARFLLPTVKVM*
back to top

mRNA from alignment at P-wetherbeei_contig5823:2413..3265+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5823.5.1 ID=mRNA_P-wetherbeei_contig5823.5.1|Name=mRNA_P-wetherbeei_contig5823.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=853bp|location=Sequence derived from alignment at P-wetherbeei_contig5823:2413..3265+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGGCATCGGTGGCAACGGCGGCAGCGGTTACAGCGGCGGCTGCTCC
GATAGCAGCGACCCCAGTGGCCCGCCGTTGCGCCGTGCATGACTGCGCCG
AGTGGAAGGCTGTGTAGGCGCATGATATCAGCGCGCCATGCAAGGTCGCC
GGGTGCAGCTATCCTCTCTGCGCCGCGAGCCTGGCTGGGCAGGCTGAACC
ATTTCACCGCCTGCACGGACGTCGGCTGCGGCGTCTGCGGCCCTGACGGG
AGGTGAGTGTCTCTTTTGACTTTCTCTTGGGACGTACAATGGGCTCGGTT
GGAGTATCGAAAACAGGACGTGTTGATGTGCAACGATGCGAAAGAATGCT
GGCCAGTGATTCCTTTACATCTCCCGTCTACCCGAATGCGAGACAGGCGC
ACGGCTGCGGCTCGCTCGTTCGGTGCCGCGAGCTTTCTTCTCATGGCTTG
CCTCGTGAATTTCCATCTCTTCTTCCAAAAACAGACGTCTGTCTTGACAT
CGCTCTGTCTTGACCTGCATTGCCCGTGTTCTTGCGGCCGCAGGCCCTCC
CTCCGTCCAGAAACTGGGAGAGGCACCGCCCAGAATCGTGGCTCCGCCGG
AGAGTCCGCGGTCAACGAGGGAAGCTGCTGGCGGGTGCTCACACAACGGA
AGGAAAAGGAGCGCCAGCGCTCTGCTGTGTTGTGGACGACGGGGGGAAAG
TCGCCAGCACGATTCCTGTTGCCTACTGTAAAGGTGATGTAAAAACACGT
TTGGCAGCGTTTCAGGAGGGACAGCTAGCAATGGCAACCGCAGCAGCCGC
AATCGCACCAGAAAGCGCCTGTTTGACGGCAGCATCTGAGGCAACCATAA
GGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5823:2413..3265+

>mRNA_P-wetherbeei_contig5823.5.1 ID=mRNA_P-wetherbeei_contig5823.5.1|Name=mRNA_P-wetherbeei_contig5823.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig5823:2413..3265+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTGCGCCGAGTGGAAGGCTGTGTAGGCGCATGATATCAGCGCGCCA
TGCAAGGTCGCCGGGTGCAGCTATCCTCTCTGCGCCGCGAGCCTGGCTGG
GCAGGCTGAACCATTTCACCGCCTGCACGGACGTCGGCTGCGGCGTCTGC
GGCCCTGACGGGAGGCCCTCCCTCCGTCCAGAAACTGGGAGAGGCACCGC
CCAGAATCGTGGCTCCGCCGGAGAGTCCGCGGTCAACGAGGGAAGCTGCT
GGCGGGTGCTCACACAACGGAAGGAAAAGGAGCGCCAGCGCTCTGCTGTG
TTGTGGACGACGGGGGGAAAGTCGCCAGCACGATTCCTGTTGCCTACTGT
AAAGGTGATGTAA
back to top