mRNA_P-wetherbeei_contig5823.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5823.2.2
Unique NamemRNA_P-wetherbeei_contig5823.2.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5823.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5823contigP-wetherbeei_contig5823:1344..2372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size559
Hectar predicted targeting categoryother localisation
Exons3
Cds size558
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186862.7142825-CDS-P-wetherbeei_contig5823:1343..14281683186862.7142825-CDS-P-wetherbeei_contig5823:1343..1428Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5823 1344..1428 +
1683186862.7260711-CDS-P-wetherbeei_contig5823:1608..19771683186862.7260711-CDS-P-wetherbeei_contig5823:1608..1977Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5823 1609..1977 +
1683186862.736762-CDS-P-wetherbeei_contig5823:2268..23721683186862.736762-CDS-P-wetherbeei_contig5823:2268..2372Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5823 2269..2372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5823.2.2prot_P-wetherbeei_contig5823.2.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5823 1344..2372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5823.2.2

>prot_P-wetherbeei_contig5823.2.2 ID=prot_P-wetherbeei_contig5823.2.2|Name=mRNA_P-wetherbeei_contig5823.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=186bp
ESLPIVLVGLGYGKQRGFGKIEINAQLSGPVLLLPSRSFSTKGGLAAPLS
MLFLQRACAEGPAERRHRFLLCLPLILHIGKCGSGGGSACSGGSRCAVIR
WYWSEAQPCREQCLGLGLGLPRPAVLSDPLRAERPPQPHGGRVRRLRSHP
RGGGDRKRWANLLLMLSLAKHRPGGWLQFGAEPGSG
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mRNA from alignment at P-wetherbeei_contig5823:1344..2372+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5823.2.2 ID=mRNA_P-wetherbeei_contig5823.2.2|Name=mRNA_P-wetherbeei_contig5823.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1029bp|location=Sequence derived from alignment at P-wetherbeei_contig5823:1344..2372+ (Phaeothamnion wetherbeei SAG_119_79)
GAATCCTTACCTATAGTCCTTGTGGGTTTGGGTTACGGGAAACAGCGAGG
ATTTGGAAAAATCGAAATCAACGCGCAGCTATCAGGTGACGACACCCCGT
TTTCCAGAAGCCAGCGTGCAACCTTCTCCTGTTGCTGGAGAAAGGAGGGC
CGTTGTGCCCTCCTTCTTTCTTTGCTTGAGCGATTGATTGCTGTGAGACA
TGTCGCTCGTCTCTCGCCCGTCTCGCTCACCATGCACGTTGATGCTTTTT
CTCTATTGGCAGCAGGTCCCGTCCTCCTTCTCCCCTCCCGCTCTTTTTCT
ACCAAGGGAGGGCTGGCTGCCCCCCTATCTATGCTTTTCCTGCAACGGGC
CTGTGCTGAAGGCCCGGCAGAGCGGCGCCATCGTTTCCTTCTCTGTTTAC
CGCTCATTTTGCACATCGGCAAGTGCGGCAGCGGCGGTGGCAGCGCCTGC
TCGGGCGGCTCGCGCTGCGCGGTGATCAGGTGGTATTGGAGCGAAGCACA
ACCTTGCCGAGAGCAATGCTTAGGGTTAGGGTTAGGATTGCCGCGTCCTG
CTGTGCTTTCAGATCCGCTTCGTGCTGAGCGACCACCACAGCCACATGGC
GGCCGAGTGCGCCGTCTGCGTTCCCATCCGCGAGGTACGGACAGGACGAC
GGTGGTCTGCTTCTGTCTGACCGCTCAATTTGCCCTTCTGGTGCCGTTCT
TTCTTTCCGAGGCTGCCTCGTGGCTGCCAGCGCATCCTGTATACCTTTGC
CTTGCCTTTCTCTTCCCTTTCTCTTCCTTTCTCCCTCAGCCAGGTTTTGA
GTTCGTAATAGACAGGTCGGCGCTATCAATTGCTTGGAGCTGTGGGACCA
TCGTACACTTCCTTCCTTGCTTGCGCGCTGTTTGGTGGCCCTAACCCTAA
CCCTAACCCTTACCCTAAACCACAGGCGGAGGAGACCGAAAGCGGTGGGC
GAATCTGCTGCTCATGCTCTCTCTCGCCAAACATCGTCCCGGCGGCTGGC
TGCAATTCGGGGCCGAGCCGGGTTCTGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5823:1344..2372+

>mRNA_P-wetherbeei_contig5823.2.2 ID=mRNA_P-wetherbeei_contig5823.2.2|Name=mRNA_P-wetherbeei_contig5823.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig5823:1344..2372+ (Phaeothamnion wetherbeei SAG_119_79)
GAATCCTTACCTATAGTCCTTGTGGGTTTGGGTTACGGGAAACAGCGAGG
ATTTGGAAAAATCGAAATCAACGCGCAGCTATCAGGTCCCGTCCTCCTTC
TCCCCTCCCGCTCTTTTTCTACCAAGGGAGGGCTGGCTGCCCCCCTATCT
ATGCTTTTCCTGCAACGGGCCTGTGCTGAAGGCCCGGCAGAGCGGCGCCA
TCGTTTCCTTCTCTGTTTACCGCTCATTTTGCACATCGGCAAGTGCGGCA
GCGGCGGTGGCAGCGCCTGCTCGGGCGGCTCGCGCTGCGCGGTGATCAGG
TGGTATTGGAGCGAAGCACAACCTTGCCGAGAGCAATGCTTAGGGTTAGG
GTTAGGATTGCCGCGTCCTGCTGTGCTTTCAGATCCGCTTCGTGCTGAGC
GACCACCACAGCCACATGGCGGCCGAGTGCGCCGTCTGCGTTCCCATCCG
CGAGGCGGAGGAGACCGAAAGCGGTGGGCGAATCTGCTGCTCATGCTCTC
TCTCGCCAAACATCGTCCCGGCGGCTGGCTGCAATTCGGGGCCGAGCCGG
GTTCTGGC
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