mRNA_P-wetherbeei_contig58228.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58228.1.1
Unique NamemRNA_P-wetherbeei_contig58228.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58228.1.1 vs. uniprot
Match: UPI001C3D8EED (cobalamin B12-binding domain-containing protein n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3D8EED)

HSP 1 Score: 194 bits (492), Expect = 9.450e-62
Identity = 96/116 (82.76%), Postives = 106/116 (91.38%), Query Frame = 1 
Query:    1 DRGAKIIARSLRDAGMEIIYTGLHQTPEQIAATVVQEDADAVGLSILSGAHMTLVPRVVDLLRAEGAGDVVVIVGGTIPHDDIPTLKELGVAAVFTPGAPVQGMIDFINAAVPAVR 348
            DRGAKIIARSLRDAGME+IYTGLHQTPEQIAATVVQEDADAVGLSILSGAHMTLVPRV+DLLR+EGAGDVVV+VGGTIP DDI  L+E+GV AV+TPGAPV  M++FI  +VP  R
Sbjct:   18 DRGAKIIARSLRDAGMEVIYTGLHQTPEQIAATVVQEDADAVGLSILSGAHMTLVPRVLDLLRSEGAGDVVVMVGGTIPRDDIEPLREMGVGAVYTPGAPVGEMVEFIERSVPGAR 133
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BLAST of mRNA_P-wetherbeei_contig58228.1.1 vs. uniprot
Match: A0A7K0QQX6_9ACTN (Methylmalonyl-CoA mutase n=4 Tax=root TaxID=1 RepID=A0A7K0QQX6_9ACTN)

HSP 1 Score: 189 bits (480), Expect = 7.240e-60
Identity = 95/112 (84.82%), Postives = 100/112 (89.29%), Query Frame = 1 
Query:    1 DRGAKIIARSLRDAGMEIIYTGLHQTPEQIAATVVQEDADAVGLSILSGAHMTLVPRVVDLLRAEGAGDVVVIVGGTIPHDDIPTLKELGVAAVFTPGAPVQGMIDFINAAV 336
            DRGAKIIAR+LRDAGME+IYTGLHQTPEQI  TV+QEDADAVGLSILSGAHMTLVPR+VDLLRAEG  DVVV VGGTIP DDIP LK LGVA VFTPGAP QG+IDFI  AV
Sbjct:   23 DRGAKIIARALRDAGMEVIYTGLHQTPEQIVETVIQEDADAVGLSILSGAHMTLVPRIVDLLRAEGIDDVVVTVGGTIPADDIPELKALGVAEVFTPGAPTQGIIDFIQGAV 134
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BLAST of mRNA_P-wetherbeei_contig58228.1.1 vs. uniprot
Match: A0A7W0H5G6_9ACTN (Cobalamin B12-binding domain-containing protein n=1 Tax=Thermoleophilaceae bacterium TaxID=2732252 RepID=A0A7W0H5G6_9ACTN)

HSP 1 Score: 186 bits (472), Expect = 9.260e-59
Identity = 90/113 (79.65%), Postives = 104/113 (92.04%), Query Frame = 1 
Query:    1 DRGAKIIARSLRDAGMEIIYTGLHQTPEQIAATVVQEDADAVGLSILSGAHMTLVPRVVDLLRAEGAGDVVVIVGGTIPHDDIPTLKELGVAAVFTPGAPVQGMIDFINAAVP 339
            DRGAKIIAR+LRDAGME+IYTGLHQTPEQI  TV+QEDADAVGLSILSGAHMTLVPR+  LL++EGA DVV++VGGTIP+DDIP LK+LGV+ VFTPGAPVQG+ID+I  +VP
Sbjct:   19 DRGAKIIARALRDAGMEVIYTGLHQTPEQIVETVLQEDADAVGLSILSGAHMTLVPRIAALLKSEGAEDVVLVVGGTIPNDDIPELKQLGVSEVFTPGAPVQGIIDYIKQSVP 131
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BLAST of mRNA_P-wetherbeei_contig58228.1.1 vs. uniprot
Match: A0A538LE94_9ACTN (Cobalamin B12-binding domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538LE94_9ACTN)

HSP 1 Score: 186 bits (471), Expect = 1.450e-58
Identity = 93/112 (83.04%), Postives = 101/112 (90.18%), Query Frame = 1 
Query:    1 DRGAKIIARSLRDAGMEIIYTGLHQTPEQIAATVVQEDADAVGLSILSGAHMTLVPRVVDLLRAEGAGDVVVIVGGTIPHDDIPTLKELGVAAVFTPGAPVQGMIDFINAAV 336
            DRGAKIIAR+LRDAGME+IYTGLHQTPEQIA TV+QEDADAVGLSILSGAHMTLVPRVVDLL+ +GA DVVV VGGTIP DDIP LK+LGVA VFTPGAP Q ++DFI  AV
Sbjct:   23 DRGAKIIARALRDAGMEVIYTGLHQTPEQIAETVIQEDADAVGLSILSGAHMTLVPRVVDLLKQQGAEDVVVTVGGTIPDDDIPELKKLGVAEVFTPGAPTQQIVDFIREAV 134
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BLAST of mRNA_P-wetherbeei_contig58228.1.1 vs. uniprot
Match: UPI0003FA3AEB (cobalamin B12-binding domain-containing protein n=2 Tax=unclassified Solirubrobacter TaxID=2640968 RepID=UPI0003FA3AEB)

HSP 1 Score: 185 bits (470), Expect = 1.990e-58
Identity = 93/112 (83.04%), Postives = 101/112 (90.18%), Query Frame = 1 
Query:    1 DRGAKIIARSLRDAGMEIIYTGLHQTPEQIAATVVQEDADAVGLSILSGAHMTLVPRVVDLLRAEGAGDVVVIVGGTIPHDDIPTLKELGVAAVFTPGAPVQGMIDFINAAV 336
            DRGAKIIAR+LRDAGME+IYTGLHQTPEQI  TV+QEDADAVGLSILSGAHMTLVPRVV+LLR + AGDV+V VGGTIP+ DIP LKELGVAAVFTPGAP Q +IDFI  AV
Sbjct:   21 DRGAKIIARALRDAGMEVIYTGLHQTPEQIVETVLQEDADAVGLSILSGAHMTLVPRVVELLREQDAGDVLVTVGGTIPNQDIPQLKELGVAAVFTPGAPTQDIIDFIKGAV 132
[Close]
BLAST of mRNA_P-wetherbeei_contig58228.1.1 vs. uniprot
Match: A0A538CK14_9ACTN (Cobalamin B12-binding domain-containing protein n=3 Tax=Actinobacteria TaxID=201174 RepID=A0A538CK14_9ACTN)

HSP 1 Score: 185 bits (470), Expect = 2.120e-58
Identity = 91/113 (80.53%), Postives = 101/113 (89.38%), Query Frame = 1 
Query:    1 DRGAKIIARSLRDAGMEIIYTGLHQTPEQIAATVVQEDADAVGLSILSGAHMTLVPRVVDLLRAEGAGDVVVIVGGTIPHDDIPTLKELGVAAVFTPGAPVQGMIDFINAAVP 339
            DRGAKIIAR+LRDAGME+IYTGLHQTPEQI  TV+QEDADAVGLSILSGAHMTLVPRVV+LL+ +G  DV+V VGGTIP+DDIP LK+LGVA VFTPGAP Q +IDFI  AVP
Sbjct:   22 DRGAKIIARALRDAGMEVIYTGLHQTPEQIVETVIQEDADAVGLSILSGAHMTLVPRVVELLKQQGIDDVLVTVGGTIPNDDIPQLKQLGVAEVFTPGAPTQAIIDFIQGAVP 134
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BLAST of mRNA_P-wetherbeei_contig58228.1.1 vs. uniprot
Match: A0A2W5Y9F1_9ACTN (Methylmalonyl-CoA mutase n=1 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A2W5Y9F1_9ACTN)

HSP 1 Score: 185 bits (469), Expect = 2.830e-58
Identity = 93/114 (81.58%), Postives = 100/114 (87.72%), Query Frame = 1 
Query:    1 DRGAKIIARSLRDAGMEIIYTGLHQTPEQIAATVVQEDADAVGLSILSGAHMTLVPRVVDLLRAEGAGDVVVIVGGTIPHDDIPTLKELGVAAVFTPGAPVQGMIDFINAAVPA 342
            DRGAKIIAR+LRDAGME+IYTGLHQTPEQI ATV+QEDADAVGLSILSGAHMTLVPRVV+LL  + AGDV+V VGGTIP DDIP LK LGVA VFTPGAP Q +IDFI  AV A
Sbjct:   21 DRGAKIIARALRDAGMEVIYTGLHQTPEQIVATVIQEDADAVGLSILSGAHMTLVPRVVELLNEQDAGDVLVTVGGTIPADDIPELKRLGVAEVFTPGAPTQAIIDFIRGAVAA 134
[Close]
BLAST of mRNA_P-wetherbeei_contig58228.1.1 vs. uniprot
Match: A0A1H6FHN4_THEAL (Methylmalonyl-CoA mutase, C-terminal domain n=1 Tax=Thermoleophilum album TaxID=29539 RepID=A0A1H6FHN4_THEAL)

HSP 1 Score: 184 bits (466), Expect = 1.360e-57
Identity = 91/117 (77.78%), Postives = 102/117 (87.18%), Query Frame = 1 
Query:    1 DRGAKIIARSLRDAGMEIIYTGLHQTPEQIAATVVQEDADAVGLSILSGAHMTLVPRVVDLLRAEGAGDVVVIVGGTIPHDDIPTLKELGVAAVFTPGAPVQGMIDFINAAVPAVRG 351
            DRGAKIIAR+LRDAGME+IYTGLHQTPEQI  T +QEDADAVGLSILSGAHMTLVP+VV LLR +GA DVVV+VGGTIP DDIP LK+LGVA VFTPG+ VQ ++DFI +AV   RG
Sbjct:   32 DRGAKIIARALRDAGMEVIYTGLHQTPEQIVETAIQEDADAVGLSILSGAHMTLVPKVVRLLREQGADDVVVVVGGTIPKDDIPELKKLGVAEVFTPGSSVQAIVDFIRSAVAEARG 148
[Close]
BLAST of mRNA_P-wetherbeei_contig58228.1.1 vs. uniprot
Match: UPI001B19DC9F (Cobalamin B12-binding domain-containing protein n=1 Tax=Solirubrobacteraceae bacterium TaxID=2586742 RepID=UPI001B19DC9F)

HSP 1 Score: 183 bits (464), Expect = 1.740e-57
Identity = 90/112 (80.36%), Postives = 101/112 (90.18%), Query Frame = 1 
Query:    1 DRGAKIIARSLRDAGMEIIYTGLHQTPEQIAATVVQEDADAVGLSILSGAHMTLVPRVVDLLRAEGAGDVVVIVGGTIPHDDIPTLKELGVAAVFTPGAPVQGMIDFINAAV 336
            DRGAKIIAR+LRDAGME+IYTGLHQTPEQI  TV+QEDADAVGLSILSGAHMTLVP++V+LL+ EGA DV+V VGGTIP DDIP LK+LGVA VFTPG+P Q +IDFIN AV
Sbjct:   22 DRGAKIIARALRDAGMEVIYTGLHQTPEQIVETVLQEDADAVGLSILSGAHMTLVPKIVELLKEEGADDVLVTVGGTIPGDDIPELKQLGVAEVFTPGSPTQDIIDFINGAV 133
[Close]
BLAST of mRNA_P-wetherbeei_contig58228.1.1 vs. uniprot
Match: A0A5B8U4A4_9ACTN (Cobalamin B12-binding domain-containing protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A5B8U4A4_9ACTN)

HSP 1 Score: 182 bits (461), Expect = 6.660e-57
Identity = 92/119 (77.31%), Postives = 101/119 (84.87%), Query Frame = 1 
Query:    1 DRGAKIIARSLRDAGMEIIYTGLHQTPEQIAATVVQEDADAVGLSILSGAHMTLVPRVVDLLRAEGAGDVVVIVGGTIPHDDIPTLKELGVAAVFTPGAPVQGMIDFINAAVPAVRGEG 357
            DRGAKIIAR+LRDAGME+IYTGLHQTPEQI  TV+QEDADAVGLSILSGAHMTLVPR+V LL  +G  DV+V VGGTIP DDI  LKELGVA VFTPGAP Q +IDFI +AV A R +G
Sbjct:   23 DRGAKIIARALRDAGMEVIYTGLHQTPEQIVETVIQEDADAVGLSILSGAHMTLVPRIVQLLSEQGIDDVLVTVGGTIPADDIGPLKELGVAEVFTPGAPTQAIIDFIRSAVEASRVDG 141
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58228.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3D8EED9.450e-6282.76cobalamin B12-binding domain-containing protein n=... [more]
A0A7K0QQX6_9ACTN7.240e-6084.82Methylmalonyl-CoA mutase n=4 Tax=root TaxID=1 RepI... [more]
A0A7W0H5G6_9ACTN9.260e-5979.65Cobalamin B12-binding domain-containing protein n=... [more]
A0A538LE94_9ACTN1.450e-5883.04Cobalamin B12-binding domain-containing protein n=... [more]
UPI0003FA3AEB1.990e-5883.04cobalamin B12-binding domain-containing protein n=... [more]
A0A538CK14_9ACTN2.120e-5880.53Cobalamin B12-binding domain-containing protein n=... [more]
A0A2W5Y9F1_9ACTN2.830e-5881.58Methylmalonyl-CoA mutase n=1 Tax=Solirubrobacteral... [more]
A0A1H6FHN4_THEAL1.360e-5777.78Methylmalonyl-CoA mutase, C-terminal domain n=1 Ta... [more]
UPI001B19DC9F1.740e-5780.36Cobalamin B12-binding domain-containing protein n=... [more]
A0A5B8U4A4_9ACTN6.660e-5777.31Cobalamin B12-binding domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58228contigP-wetherbeei_contig58228:145..504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1380390.JIAT01000009_gene377
PFAMsB12-binding
Model size360
Max annot lvl84995|Rubrobacteria
KEGG rclassRC00395
KEGG koko:K01849
KEGG ReactionR00833
KEGG Pathwayko00280,ko00630,ko00640,ko00720,ko01100,ko01120,ko01200,map00280,map00630,map00640,map00720,map01100,map01120,map01200
KEGG ModuleM00375,M00376,M00741
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.44e-58
EggNOG OGsCOG2185@1|root,COG2185@2|Bacteria,2IFJD@201174|Actinobacteria,4CQ6D@84995|Rubrobacteria
EC5.4.99.2
DescriptionB12 binding domain
Cds size360
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186862.6466098-CDS-P-wetherbeei_contig58228:144..5041683186862.6466098-CDS-P-wetherbeei_contig58228:144..504Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58228 145..504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58228.1.1prot_P-wetherbeei_contig58228.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58228 145..504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58228.1.1

>prot_P-wetherbeei_contig58228.1.1 ID=prot_P-wetherbeei_contig58228.1.1|Name=mRNA_P-wetherbeei_contig58228.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
DRGAKIIARSLRDAGMEIIYTGLHQTPEQIAATVVQEDADAVGLSILSGA
HMTLVPRVVDLLRAEGAGDVVVIVGGTIPHDDIPTLKELGVAAVFTPGAP
VQGMIDFINAAVPAVRGEG*
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mRNA from alignment at P-wetherbeei_contig58228:145..504-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58228.1.1 ID=mRNA_P-wetherbeei_contig58228.1.1|Name=mRNA_P-wetherbeei_contig58228.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig58228:145..504- (Phaeothamnion wetherbeei SAG_119_79)
GACCGCGGGGCCAAGATCATCGCGCGCAGCCTGCGTGACGCCGGCATGGA
GATCATCTACACGGGGCTCCACCAGACCCCGGAGCAGATCGCCGCGACCG
TGGTGCAGGAGGACGCCGACGCGGTCGGCCTCTCCATCCTCTCCGGCGCC
CACATGACGCTCGTGCCGCGGGTGGTCGACCTGCTGCGGGCCGAGGGGGC
GGGCGACGTGGTGGTCATCGTGGGGGGCACGATCCCGCACGACGACATCC
CGACCCTCAAGGAGCTCGGGGTGGCGGCGGTCTTCACGCCGGGCGCGCCG
GTGCAGGGGATGATCGACTTCATCAACGCCGCGGTGCCCGCCGTGCGGGG
AGAGGGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58228:145..504-

>mRNA_P-wetherbeei_contig58228.1.1 ID=mRNA_P-wetherbeei_contig58228.1.1|Name=mRNA_P-wetherbeei_contig58228.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig58228:145..504- (Phaeothamnion wetherbeei SAG_119_79)
GACCGCGGGGCCAAGATCATCGCGCGCAGCCTGCGTGACGCCGGCATGGA
GATCATCTACACGGGGCTCCACCAGACCCCGGAGCAGATCGCCGCGACCG
TGGTGCAGGAGGACGCCGACGCGGTCGGCCTCTCCATCCTCTCCGGCGCC
CACATGACGCTCGTGCCGCGGGTGGTCGACCTGCTGCGGGCCGAGGGGGC
GGGCGACGTGGTGGTCATCGTGGGGGGCACGATCCCGCACGACGACATCC
CGACCCTCAAGGAGCTCGGGGTGGCGGCGGTCTTCACGCCGGGCGCGCCG
GTGCAGGGGATGATCGACTTCATCAACGCCGCGGTGCCCGCCGTGCGGGG
AGAGGGCTGA
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