mRNA_P-wetherbeei_contig582.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig582.2.1
Unique NamemRNA_P-wetherbeei_contig582.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig582.2.1 vs. uniprot
Match: A0A6H5KJY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJY1_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 9.120e-6
Identity = 46/135 (34.07%), Postives = 66/135 (48.89%), Query Frame = 3 
Query:  282 KRLIVLNSREKPGVSAKSGVVAPVPFNTPSLRKETAGLDADYGGCGPPAGAKFGWQSAEADPAAATVAFNGGGGGPRGTVRANGSGPAGAASDATRGLEGRGPAAGRGTRGGDEIFSRHFPELSAAREQEERAKA 686
            KR +++ +++     AK+GVVAPVP NTPSLR+E  G +A        +G+  GW SA    A+A  A                      A  +     G+G   G G + GD++F+RHFP+L A  EQ E+  A
Sbjct:   16 KRYMMVGTKDALPAGAKTGVVAPVPINTPSLRQEIQGENAGTAAINR-SGSGGGWGSAVVSSASANSA----------------------AGQSVASGNGKGRRDGSGRQRGDDVFTRHFPDLRAGLEQAEKLDA 127
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig582.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJY1_9PHAE9.120e-634.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig582contigP-wetherbeei_contig582:6058..9507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3204
Hectar predicted targeting categoryother localisation
Exons2
Cds size2835
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186862.2111833-UTR-P-wetherbeei_contig582:6057..62211683186862.2111833-UTR-P-wetherbeei_contig582:6057..6221Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig582 6058..6221 +
1683186862.235314-UTR-P-wetherbeei_contig582:9302..95071683186862.235314-UTR-P-wetherbeei_contig582:9302..9507Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig582 9303..9507 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186862.2195852-CDS-P-wetherbeei_contig582:6221..66911683186862.2195852-CDS-P-wetherbeei_contig582:6221..6691Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig582 6222..6691 +
1683186862.2274554-CDS-P-wetherbeei_contig582:6937..93021683186862.2274554-CDS-P-wetherbeei_contig582:6937..9302Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig582 6938..9302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig582.2.1prot_P-wetherbeei_contig582.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig582 6222..9302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig582.2.1

>prot_P-wetherbeei_contig582.2.1 ID=prot_P-wetherbeei_contig582.2.1|Name=mRNA_P-wetherbeei_contig582.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=945bp
MSRPYTSRNLNASRPQPAAGGGRGSNGGAPGGAGSTRDPKRLIVLNSREK
PGVSAKSGVVAPVPFNTPSLRKETAGLDADYGGCGPPAGAKFGWQSAEAD
PAAATVAFNGGGGGPRGTVRANGSGPAGAASDATRGLEGRGPAAGRGTRG
GDEIFSRHFPELSAAREQEERAKAAAKAAARAGPKPAPRGAAVKKAVVKV
PLQQLQQPGVGVGVAPLGSSPAAGAAAAAAAPLAAVTAPSLGSGTSKDAV
DGGGGGGGTAAPGAGGLRPRGGLRPGASSAVMLGPPSGAAASAAEDKARA
AAAAAATSAANAARYEHTPGPSFEEEMQRRSRRGTRGAAVAPGVLTGAPG
GGGGSGGGGSGGGGGISSPGGGSGGGGAGGSSGGGNSGGRFGSGCGGEVD
PQPSRVGALTEPRDGYARRNGGDRGGDGANGDYGRSRASPLPAVVAASPA
LTYQRQYGPPPRLIGAAAGTASPSPAPVPSEPQQQHSGGGSGSRGDWSPP
HARLAPSAQTLRHGSGRDTSAGTNGFAKQSERGAGGYDSTAWRSGNGGAS
GLPGRRSPSPPQGQGQQQQQPLSAQPDAYRHSGTRRDGGGAGGCGDGLSV
VTGAGRSSRWGSAASPPSAGAVERDAFSLLASQKSPPWSAAGDVPDVFAT
VGVPQPQQPYSAFDAAGLNGSAALVAGDDWGASPAAGGSGGGAGRVGRTG
RGASPATVDGGSGSNKISTILGGAAAVPPPVAADGGTWDPRLSFERRPGY
TQAFSQSPSSGAMPAGADPPPLPSGLSHWDGGVDVDGCDVGVSGDGGGGV
DDGDDGVAGATALFAPGRLKGDRYVLPARRQQQDSPPQPPPGMGQTSPAL
GLATQQPPLATMPTPPLPSPASPLMGGDGGFGSFGQAIMAPMPASFSALP
PPPSLGGSGGSGVPLAMPPGVPPPTVDPHSAFATSPQYAYHASS*
back to top

mRNA from alignment at P-wetherbeei_contig582:6058..9507+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig582.2.1 ID=mRNA_P-wetherbeei_contig582.2.1|Name=mRNA_P-wetherbeei_contig582.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3450bp|location=Sequence derived from alignment at P-wetherbeei_contig582:6058..9507+ (Phaeothamnion wetherbeei SAG_119_79)
GCCCCTCTTTCACCGGCATTGCTTTGGCGAACAACATTTAATCGCTGTGT
GGGCAGAGGCCGACGAAGTTTTGGTAAGCACCAGAGAAGAGGGCAGAGGA
TATCCGTCGACCGCGCGAGAGACCAGACGAGCGCGCCGAAAATTATTGAG
AGCTCCCGTCGTGTATGAGCCGTCCGTACACGAGCCGCAACCTCAATGCA
TCACGTCCGCAGCCAGCAGCAGGAGGAGGTAGGGGCAGCAACGGCGGCGC
GCCCGGCGGCGCCGGCAGTACGCGTGACCCGAAGCGTTTGATCGTTCTCA
ACAGTCGCGAAAAGCCAGGCGTTTCCGCCAAGAGCGGCGTCGTCGCGCCG
GTACCCTTCAACACCCCCAGCCTTCGCAAGGAAACTGCCGGGCTCGATGC
CGATTACGGCGGGTGCGGCCCACCAGCGGGAGCCAAATTTGGTTGGCAGT
CTGCAGAAGCCGACCCTGCGGCGGCCACGGTGGCTTTTAACGGCGGCGGC
GGGGGCCCCCGCGGCACGGTAAGGGCGAATGGGAGCGGTCCTGCTGGCGC
CGCAAGCGACGCTACTCGTGGGCTCGAGGGACGGGGTCCCGCGGCTGGGC
GCGGCACCCGAGGCGGCGATGAGATTTTTTCCAGGTTCGTTGTTTGTTTG
GTTTGGAGGGAAATATCTTCTTTTTAGTTTTGTTAGCAGATGCTCTTCTA
CGAGCACTGTTTGCAGTACGATTTGCGGTTTCTCCACGATTGTTAGAGAG
GGGCGAAGAAGGGCGAAGATATCCCTGCGCTATGTCCTCTTCTTCAGTTT
CCCCTGCCAAGGAAGGACCGTAACAGGCGCCTTCATTCACGCCCTTCTTC
GCCGAATTCTTTTCTTGTGCGTCCATGCAGGCATTTTCCAGAGCTAAGCG
CGGCTCGGGAGCAGGAGGAGAGGGCGAAAGCGGCGGCCAAGGCGGCAGCC
CGGGCAGGCCCCAAGCCGGCACCGCGGGGCGCCGCTGTGAAGAAGGCTGT
CGTCAAAGTTCCCCTCCAGCAGCTGCAGCAGCCGGGCGTCGGTGTCGGCG
TCGCTCCGCTGGGCTCATCTCCCGCGGCGGGAGCGGCGGCGGCAGCGGCG
GCGCCTTTAGCAGCGGTCACGGCCCCATCGCTTGGATCCGGCACTTCCAA
AGATGCGGTTGACGGCGGCGGCGGTGGTGGTGGTACGGCTGCTCCCGGCG
CGGGCGGGTTGCGGCCGCGCGGCGGGCTCCGGCCCGGCGCATCGTCCGCC
GTCATGCTGGGGCCGCCGAGCGGCGCCGCTGCCAGCGCCGCTGAGGACAA
GGCCCGGGCGGCGGCAGCGGCCGCCGCCACGTCCGCCGCCAACGCCGCCC
GCTACGAGCACACGCCAGGCCCCAGCTTCGAGGAGGAGATGCAGCGGCGC
TCGCGGCGGGGCACGCGGGGCGCCGCGGTGGCCCCAGGCGTGCTGACGGG
AGCACCTGGCGGCGGCGGAGGCAGCGGCGGCGGCGGTAGCGGCGGCGGCG
GCGGCATCAGCAGCCCTGGTGGCGGCTCTGGCGGTGGTGGCGCTGGCGGT
AGTAGTGGTGGCGGCAACAGCGGTGGTCGCTTTGGCAGCGGCTGTGGCGG
CGAGGTGGATCCCCAGCCGTCGAGAGTAGGCGCTTTGACCGAGCCGCGTG
ACGGCTACGCCCGCCGGAACGGCGGCGACAGAGGCGGCGATGGCGCAAAC
GGTGACTACGGCCGTTCCCGTGCGTCACCGCTGCCGGCTGTGGTGGCTGC
ATCGCCCGCGCTGACATACCAGCGGCAGTACGGCCCGCCGCCGCGATTGA
TCGGGGCAGCGGCCGGCACGGCGTCGCCGTCGCCGGCTCCGGTACCCTCA
GAGCCGCAGCAGCAGCATAGCGGGGGAGGGTCTGGCTCCAGAGGCGACTG
GTCACCACCACATGCAAGATTGGCGCCGTCGGCGCAAACGTTGCGGCACG
GCAGCGGGCGCGACACCTCGGCGGGGACCAATGGCTTTGCGAAGCAGTCG
GAGAGAGGTGCCGGCGGATACGACAGCACAGCGTGGCGCAGCGGCAACGG
CGGTGCCAGTGGGTTGCCAGGACGCCGCTCGCCATCGCCGCCGCAGGGAC
AGGGACAGCAACAGCAGCAGCCGCTTTCGGCGCAGCCGGACGCGTATCGT
CATTCCGGCACGCGCCGCGACGGCGGCGGCGCCGGCGGTTGCGGTGACGG
GCTGTCCGTGGTCACTGGCGCGGGGCGCAGCAGCCGCTGGGGGTCCGCCG
CGAGTCCGCCGTCAGCGGGCGCGGTGGAACGGGACGCCTTCAGCCTGCTC
GCTTCGCAGAAGAGCCCGCCGTGGTCGGCGGCGGGCGATGTGCCGGACGT
GTTTGCGACGGTGGGTGTTCCGCAGCCACAGCAACCGTATTCTGCCTTTG
ATGCGGCCGGCCTGAACGGCAGCGCGGCGCTGGTCGCCGGAGACGACTGG
GGTGCCTCTCCTGCTGCTGGCGGCAGCGGCGGCGGCGCTGGCCGCGTCGG
CCGCACTGGGCGCGGCGCGTCTCCTGCCACTGTCGACGGCGGCAGCGGGA
GCAACAAGATCTCCACCATATTGGGCGGTGCAGCCGCAGTGCCGCCGCCG
GTCGCTGCCGACGGAGGGACGTGGGACCCGCGGCTGTCCTTCGAAAGGCG
GCCGGGATACACTCAAGCATTCAGCCAGTCGCCGTCGTCCGGCGCCATGC
CGGCTGGGGCGGATCCACCACCGTTGCCGTCGGGCTTAAGCCACTGGGAC
GGCGGCGTCGACGTCGACGGCTGCGACGTTGGTGTCAGCGGCGATGGCGG
CGGCGGCGTCGACGACGGGGACGACGGTGTCGCGGGTGCGACTGCGCTTT
TTGCACCCGGCCGTCTGAAAGGCGACCGGTACGTTCTGCCGGCCCGCCGG
CAGCAGCAGGACTCCCCGCCGCAGCCGCCGCCGGGAATGGGGCAGACGTC
GCCGGCCCTCGGGCTGGCCACGCAGCAGCCGCCGTTGGCCACGATGCCGA
CGCCGCCGCTGCCGTCGCCGGCGTCGCCGCTCATGGGCGGCGACGGCGGG
TTCGGCAGTTTTGGCCAGGCGATCATGGCGCCGATGCCGGCCAGCTTCTC
GGCGCTGCCGCCGCCGCCCTCCCTCGGCGGCAGCGGCGGAAGCGGCGTGC
CGCTCGCAATGCCGCCAGGCGTTCCGCCGCCGACGGTGGACCCGCACTCC
GCCTTTGCTACATCACCACAATACGCGTACCACGCTTCGTCGTAGAACTG
TGTTGTCCCGCCGCCGCGCGCCGGAGGGCCGAGAGAAAGACCATCGCTCG
CTCGCTGCCGTGTGCTGCCGCAGTCGTTCTTTGACTGTCGGGCGGTTCTT
CGGTGAGGGTACGATGAGGATTGCTATTTGTTCGGGCCGGGCAGGAAATG
AACGCACGGACATGGCTGTTTGTCTGGATTGCCGTGGGCGATACGAGCAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig582:6058..9507+

>mRNA_P-wetherbeei_contig582.2.1 ID=mRNA_P-wetherbeei_contig582.2.1|Name=mRNA_P-wetherbeei_contig582.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2835bp|location=Sequence derived from alignment at P-wetherbeei_contig582:6058..9507+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCCGTCCGTACACGAGCCGCAACCTCAATGCATCACGTCCGCAGCC
AGCAGCAGGAGGAGGTAGGGGCAGCAACGGCGGCGCGCCCGGCGGCGCCG
GCAGTACGCGTGACCCGAAGCGTTTGATCGTTCTCAACAGTCGCGAAAAG
CCAGGCGTTTCCGCCAAGAGCGGCGTCGTCGCGCCGGTACCCTTCAACAC
CCCCAGCCTTCGCAAGGAAACTGCCGGGCTCGATGCCGATTACGGCGGGT
GCGGCCCACCAGCGGGAGCCAAATTTGGTTGGCAGTCTGCAGAAGCCGAC
CCTGCGGCGGCCACGGTGGCTTTTAACGGCGGCGGCGGGGGCCCCCGCGG
CACGGTAAGGGCGAATGGGAGCGGTCCTGCTGGCGCCGCAAGCGACGCTA
CTCGTGGGCTCGAGGGACGGGGTCCCGCGGCTGGGCGCGGCACCCGAGGC
GGCGATGAGATTTTTTCCAGGCATTTTCCAGAGCTAAGCGCGGCTCGGGA
GCAGGAGGAGAGGGCGAAAGCGGCGGCCAAGGCGGCAGCCCGGGCAGGCC
CCAAGCCGGCACCGCGGGGCGCCGCTGTGAAGAAGGCTGTCGTCAAAGTT
CCCCTCCAGCAGCTGCAGCAGCCGGGCGTCGGTGTCGGCGTCGCTCCGCT
GGGCTCATCTCCCGCGGCGGGAGCGGCGGCGGCAGCGGCGGCGCCTTTAG
CAGCGGTCACGGCCCCATCGCTTGGATCCGGCACTTCCAAAGATGCGGTT
GACGGCGGCGGCGGTGGTGGTGGTACGGCTGCTCCCGGCGCGGGCGGGTT
GCGGCCGCGCGGCGGGCTCCGGCCCGGCGCATCGTCCGCCGTCATGCTGG
GGCCGCCGAGCGGCGCCGCTGCCAGCGCCGCTGAGGACAAGGCCCGGGCG
GCGGCAGCGGCCGCCGCCACGTCCGCCGCCAACGCCGCCCGCTACGAGCA
CACGCCAGGCCCCAGCTTCGAGGAGGAGATGCAGCGGCGCTCGCGGCGGG
GCACGCGGGGCGCCGCGGTGGCCCCAGGCGTGCTGACGGGAGCACCTGGC
GGCGGCGGAGGCAGCGGCGGCGGCGGTAGCGGCGGCGGCGGCGGCATCAG
CAGCCCTGGTGGCGGCTCTGGCGGTGGTGGCGCTGGCGGTAGTAGTGGTG
GCGGCAACAGCGGTGGTCGCTTTGGCAGCGGCTGTGGCGGCGAGGTGGAT
CCCCAGCCGTCGAGAGTAGGCGCTTTGACCGAGCCGCGTGACGGCTACGC
CCGCCGGAACGGCGGCGACAGAGGCGGCGATGGCGCAAACGGTGACTACG
GCCGTTCCCGTGCGTCACCGCTGCCGGCTGTGGTGGCTGCATCGCCCGCG
CTGACATACCAGCGGCAGTACGGCCCGCCGCCGCGATTGATCGGGGCAGC
GGCCGGCACGGCGTCGCCGTCGCCGGCTCCGGTACCCTCAGAGCCGCAGC
AGCAGCATAGCGGGGGAGGGTCTGGCTCCAGAGGCGACTGGTCACCACCA
CATGCAAGATTGGCGCCGTCGGCGCAAACGTTGCGGCACGGCAGCGGGCG
CGACACCTCGGCGGGGACCAATGGCTTTGCGAAGCAGTCGGAGAGAGGTG
CCGGCGGATACGACAGCACAGCGTGGCGCAGCGGCAACGGCGGTGCCAGT
GGGTTGCCAGGACGCCGCTCGCCATCGCCGCCGCAGGGACAGGGACAGCA
ACAGCAGCAGCCGCTTTCGGCGCAGCCGGACGCGTATCGTCATTCCGGCA
CGCGCCGCGACGGCGGCGGCGCCGGCGGTTGCGGTGACGGGCTGTCCGTG
GTCACTGGCGCGGGGCGCAGCAGCCGCTGGGGGTCCGCCGCGAGTCCGCC
GTCAGCGGGCGCGGTGGAACGGGACGCCTTCAGCCTGCTCGCTTCGCAGA
AGAGCCCGCCGTGGTCGGCGGCGGGCGATGTGCCGGACGTGTTTGCGACG
GTGGGTGTTCCGCAGCCACAGCAACCGTATTCTGCCTTTGATGCGGCCGG
CCTGAACGGCAGCGCGGCGCTGGTCGCCGGAGACGACTGGGGTGCCTCTC
CTGCTGCTGGCGGCAGCGGCGGCGGCGCTGGCCGCGTCGGCCGCACTGGG
CGCGGCGCGTCTCCTGCCACTGTCGACGGCGGCAGCGGGAGCAACAAGAT
CTCCACCATATTGGGCGGTGCAGCCGCAGTGCCGCCGCCGGTCGCTGCCG
ACGGAGGGACGTGGGACCCGCGGCTGTCCTTCGAAAGGCGGCCGGGATAC
ACTCAAGCATTCAGCCAGTCGCCGTCGTCCGGCGCCATGCCGGCTGGGGC
GGATCCACCACCGTTGCCGTCGGGCTTAAGCCACTGGGACGGCGGCGTCG
ACGTCGACGGCTGCGACGTTGGTGTCAGCGGCGATGGCGGCGGCGGCGTC
GACGACGGGGACGACGGTGTCGCGGGTGCGACTGCGCTTTTTGCACCCGG
CCGTCTGAAAGGCGACCGGTACGTTCTGCCGGCCCGCCGGCAGCAGCAGG
ACTCCCCGCCGCAGCCGCCGCCGGGAATGGGGCAGACGTCGCCGGCCCTC
GGGCTGGCCACGCAGCAGCCGCCGTTGGCCACGATGCCGACGCCGCCGCT
GCCGTCGCCGGCGTCGCCGCTCATGGGCGGCGACGGCGGGTTCGGCAGTT
TTGGCCAGGCGATCATGGCGCCGATGCCGGCCAGCTTCTCGGCGCTGCCG
CCGCCGCCCTCCCTCGGCGGCAGCGGCGGAAGCGGCGTGCCGCTCGCAAT
GCCGCCAGGCGTTCCGCCGCCGACGGTGGACCCGCACTCCGCCTTTGCTA
CATCACCACAATACGCGTACCACGCTTCGTCGTAG
back to top