mRNA_P-wetherbeei_contig581.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig581.4.1
Unique NamemRNA_P-wetherbeei_contig581.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig581.4.1 vs. uniprot
Match: D7FS22_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS22_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.050e-19
Identity = 50/96 (52.08%), Postives = 66/96 (68.75%), Query Frame = 1
Query:    1 LLIVACLFNVLDPVLTVAAALAHKSPFVTPFGDSARSAAEASRQRFAQHKSDHLAIVEAFNAWRNRKTGNGGGGVGDGELWEWCRENFLSFSVLDT 288
            LL++A +   LDP+LT+AAAL+ K+PF  PFG+ AR  A+ +RQ FAQ KSDHLAIVEAF AWRN++  +        E+  WCRE FLS   L++
Sbjct: 1121 LLLIAAILQCLDPILTIAAALSDKAPFQRPFGEQAR--ADKARQGFAQGKSDHLAIVEAFGAWRNKRRTSS-----YDEVRRWCREKFLSQPTLES 1209          
BLAST of mRNA_P-wetherbeei_contig581.4.1 vs. uniprot
Match: F1A427_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A427_DICPU)

HSP 1 Score: 80.1 bits (196), Expect = 2.210e-15
Identity = 39/101 (38.61%), Postives = 60/101 (59.41%), Query Frame = 1
Query:    1 LLIVACLFNVLDPVLTVAAALAHKSPFVTPFGDSARSAAEASRQRFAQHKSDHLAIVEAFNAWRNRKTGNGGGGVGDGELWEWCRENFLSFSVLDTMEQLR 303
            +L+  C+F  +DP+LT+AA L+ KSPF+ P     R       Q+FA H+SDHL  V A+N WR          + DG  +++C++N+LS S L T++ L+
Sbjct: 1100 MLLFGCIFRCIDPMLTIAATLSSKSPFLNPSDKKIRP-----HQKFASHQSDHLMFVNAYNQWRKA--------IADGNEYQFCKDNYLSISTLRTIQDLK 1187          
BLAST of mRNA_P-wetherbeei_contig581.4.1 vs. uniprot
Match: A0A7S3XX33_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX33_HETAK)

HSP 1 Score: 77.4 bits (189), Expect = 1.260e-14
Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = 1
Query:    1 LLIVACLFNVLDPVLTVAAALAHKSPFVTPFGDSARSAAEASRQRFAQHKSDHLAIVEAFNAWRNRKTGNGGGGVGDGELWEWCRENFLSFSVLDTMEQLR 303
            LL+  C+F  LDPVL++AAAL HKSP V+PF    + A  A  + F+  KSDHLA+V A+  WR +K        G+ E+  +C + FLS   L+ +  LR
Sbjct:   46 LLLWGCIFQCLDPVLSIAAALCHKSPLVSPFNKQ-QEATAAREEYFSDLKSDHLAVVRAYEGWRKKKR------EGNKEVRSFCDKRFLSSKSLEMIHALR 139          
BLAST of mRNA_P-wetherbeei_contig581.4.1 vs. uniprot
Match: A0A2I4GGX5_JUGRE (RNA helicase n=15 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4GGX5_JUGRE)

HSP 1 Score: 75.1 bits (183), Expect = 1.260e-13
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 LLIVACLFNVLDPVLTVAAALAHKSPFVTPFGDSARSAAEASRQRFAQHKSDHLAIVEAFNAWRNRKTGNGGGGVGDGELWEWCRENFLSFSVLDTMEQLR 303
            +LI+  +FN LDPVLT+ A L+ + PF+TPF    +  AEA++ +F++  SDHLA+V A+  W++ +  N G        +E+C  NFLS   +  ++ LR
Sbjct:  808 MLILGAIFNCLDPVLTIVAGLSVRDPFLTPFDK--KDLAEAAKSQFSRDYSDHLALVRAYEGWKDAEIDNSG--------YEYCWRNFLSVQSMKAIDSLR 898          
BLAST of mRNA_P-wetherbeei_contig581.4.1 vs. uniprot
Match: UPI001E1DCC6E (putative ATP-dependent RNA helicase DHX57 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DCC6E)

HSP 1 Score: 74.3 bits (181), Expect = 2.360e-13
Identity = 39/101 (38.61%), Postives = 60/101 (59.41%), Query Frame = 1
Query:    1 LLIVACLFNVLDPVLTVAAALAHKSPFVTPFGDSARSAAEASRQRFAQHKSDHLAIVEAFNAWRNRKTGNGGGGVGDGELWEWCRENFLSFSVLDTMEQLR 303
            L+++  +F  LDP LT+AA L+ KSPFVTPFG   +  A   R  FA   SDHL ++ A+NAW+  +  +G       E + +C++NFLS   L+ +  ++
Sbjct: 1076 LMLLGAIFRCLDPALTIAACLSFKSPFVTPFGK--KHEATEKRLEFAAGNSDHLTMLNAYNAWKEARKNSGH------EAYRFCQDNFLSKRSLEMLSSMK 1168          
BLAST of mRNA_P-wetherbeei_contig581.4.1 vs. uniprot
Match: C1E1I8_MICCC (RNA helicase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E1I8_MICCC)

HSP 1 Score: 73.9 bits (180), Expect = 3.180e-13
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 1
Query:    1 LLIVACLFNVLDPVLTVAAALAHKSPFVTPFGDSARSAAEASRQRFA-QHKSDHLAIVEAFNAW-RNRKTGNGGGGVGDGELWEWCRENFLSFSVLDTMEQLR 303
            +L+ A  F  L P LT+AA +A+K PFV P     +  A+A R+R A   +SDH+A+V AF  W R R+ G      G+ E WE+CR NFLS + L+ M  +R
Sbjct:  644 MLVTAATFGCLSPALTIAAGMAYKDPFVLPMDK--KHQADAVRRRLAGDTRSDHIALVRAFEGWTRARRDG------GNREGWEYCRRNFLSGNTLELMSDMR 738          
BLAST of mRNA_P-wetherbeei_contig581.4.1 vs. uniprot
Match: I1C765_RHIO9 (Uncharacterized protein n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1C765_RHIO9)

HSP 1 Score: 72.8 bits (177), Expect = 8.180e-13
Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = 1
Query:   19 LFNVLDPVLTVAAALAHKSPFVTPFGDSARSAAEASRQRFAQHKSDHLAIVEAFNAWRNRKTGNGGGGVGDGELWEWCRENFLSFSVLDTMEQLR 303
            +F  LDP+LT+AAAL+ KSPFV PFG      A+ +R RF  + SD L + +A+  WR+      G      ++ E+C+EN+LS   L+T+E+++
Sbjct: 1131 IFRCLDPILTIAAALSFKSPFVRPFGKE--DEADRARARFECNNSDFLTVYQAYEIWRDELMSVRGKPGWIRKMHEFCKENYLSHQNLETIEEMK 1223          
BLAST of mRNA_P-wetherbeei_contig581.4.1 vs. uniprot
Match: A0A835Z4K1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4K1_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.100e-12
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 1
Query:    1 LLIVACLFNVLDPVLTVAAALAHKSPFVTPFGDSARSAAEASRQRFAQHK-SDHLAIVEAFNAW--RNRKTGNGGGGVGDGELWEWCRENFLSFSVLDTMEQLR 303
            LLI+  L   LDPVLTVAAAL+ K+PFV P G +A +AA   R+RFA    SD LA+V A+ AW    R+  +  G     ++W  CR+NF++ + +  M  LR
Sbjct:  690 LLIMGALLRCLDPVLTVAAALSSKTPFVRPMGSAAEAAATDVRKRFAGGNCSDSLAVVAAYKAWDAECRRVNSSSGTCPRMKMW--CRDNFINSNAMALMAGLR 791          
BLAST of mRNA_P-wetherbeei_contig581.4.1 vs. uniprot
Match: A0A3S3PVW4_9MAGN (RNA helicase n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3PVW4_9MAGN)

HSP 1 Score: 72.0 bits (175), Expect = 1.510e-12
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 1
Query:    1 LLIVACLFNVLDPVLTVAAALAHKSPFVTPFGDSARSAAEASRQRFAQHK-SDHLAIVEAFNAWRNRKTGNGGGGVGDGELWEWCRENFLSFSVLDTMEQLR 303
            +L++ C+F  LDP LT+A+ALAH+ PFV P     +  A+A ++ FA    SDH+A+++AF AW++ K         +G    +C ENFLS   L  ME +R
Sbjct:  769 MLLMGCIFQCLDPALTIASALAHRDPFVLPINK--KEEADAVKRSFAGDSCSDHIALLKAFEAWKDAKR--------NGRERSFCWENFLSPVTLQMMEDMR 860          
BLAST of mRNA_P-wetherbeei_contig581.4.1 vs. uniprot
Match: A0A1S2Y1H0_CICAR (RNA helicase n=5 Tax=IRL clade TaxID=2233839 RepID=A0A1S2Y1H0_CICAR)

HSP 1 Score: 72.0 bits (175), Expect = 1.520e-12
Identity = 38/101 (37.62%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 LLIVACLFNVLDPVLTVAAALAHKSPFVTPFGDSARSAAEASRQRFAQHKSDHLAIVEAFNAWRNRKTGNGGGGVGDGELWEWCRENFLSFSVLDTMEQLR 303
            +LI+  +FN LDP+LTV A L+ + PF+TP     +  AEA++ +F+   SDHLA+V A+  W++ +   GG        +++C +NFLSF  +  ++ LR
Sbjct:  780 MLILGAIFNCLDPILTVVAGLSVRDPFLTPLDK--KDLAEAAKSQFSGAYSDHLALVRAYEGWKDAEVDLGG--------YDYCWKNFLSFQSMKAIDALR 870          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig581.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS22_ECTSI1.050e-1952.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
F1A427_DICPU2.210e-1538.61Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
A0A7S3XX33_HETAK1.260e-1442.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2I4GGX5_JUGRE1.260e-1338.61RNA helicase n=15 Tax=Juglandaceae TaxID=16714 Rep... [more]
UPI001E1DCC6E2.360e-1338.61putative ATP-dependent RNA helicase DHX57 n=1 Tax=... [more]
C1E1I8_MICCC3.180e-1342.72RNA helicase n=1 Tax=Micromonas commoda (strain RC... [more]
I1C765_RHIO98.180e-1340.00Uncharacterized protein n=1 Tax=Rhizopus delemar (... [more]
A0A835Z4K1_9STRA1.100e-1244.23P-loop containing nucleoside triphosphate hydrolas... [more]
A0A3S3PVW4_9MAGN1.510e-1240.20RNA helicase n=1 Tax=Cinnamomum micranthum f. kane... [more]
A0A1S2Y1H0_CICAR1.520e-1237.62RNA helicase n=5 Tax=IRL clade TaxID=2233839 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig581contigP-wetherbeei_contig581:8613..8915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FS22
Preferred nameDHX29
PFAMsDEAD,HA2,Helicase_C,OB_NTP_bind
Model size303
Max annot lvl2759|Eukaryota
KEGG koko:K18995
Hectar predicted targeting categorysignal peptide
GOsGO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006412,GO:0006413,GO:0006518,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016282,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0042623,GO:0043021,GO:0043024,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0046483,GO:0070035,GO:0070993,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
Evalue1.72e-20
EggNOG OGsCOG1643@1|root,KOG0920@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
Cds size303
COG categoryL
BRITEko00000,ko01000,ko03012
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186861.1267529-CDS-P-wetherbeei_contig581:8612..89151683186861.1267529-CDS-P-wetherbeei_contig581:8612..8915Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig581 8613..8915 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig581.4.1prot_P-wetherbeei_contig581.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig581 8613..8915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig581.4.1

>prot_P-wetherbeei_contig581.4.1 ID=prot_P-wetherbeei_contig581.4.1|Name=mRNA_P-wetherbeei_contig581.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
LLIVACLFNVLDPVLTVAAALAHKSPFVTPFGDSARSAAEASRQRFAQHK
SDHLAIVEAFNAWRNRKTGNGGGGVGDGELWEWCRENFLSFSVLDTMEQL
R
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mRNA from alignment at P-wetherbeei_contig581:8613..8915-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig581.4.1 ID=mRNA_P-wetherbeei_contig581.4.1|Name=mRNA_P-wetherbeei_contig581.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig581:8613..8915- (Phaeothamnion wetherbeei SAG_119_79)
CTGCTCATTGTGGCGTGCCTCTTCAACGTCCTAGACCCCGTCCTAACGGT GGCAGCGGCGCTCGCCCACAAGTCGCCGTTCGTCACACCGTTCGGTGATT CGGCGCGTTCTGCCGCCGAAGCATCCAGGCAGCGGTTCGCGCAGCACAAG AGCGATCACCTCGCGATCGTCGAGGCTTTCAACGCCTGGCGGAACCGCAA GACCGGCAACGGCGGCGGCGGCGTCGGCGACGGTGAACTCTGGGAGTGGT GCCGGGAGAACTTCTTGTCTTTTTCTGTGCTCGACACGATGGAGCAATTG CGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig581:8613..8915-

>mRNA_P-wetherbeei_contig581.4.1 ID=mRNA_P-wetherbeei_contig581.4.1|Name=mRNA_P-wetherbeei_contig581.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig581:8613..8915- (Phaeothamnion wetherbeei SAG_119_79)
CTGCTCATTGTGGCGTGCCTCTTCAACGTCCTAGACCCCGTCCTAACGGT
GGCAGCGGCGCTCGCCCACAAGTCGCCGTTCGTCACACCGTTCGGTGATT
CGGCGCGTTCTGCCGCCGAAGCATCCAGGCAGCGGTTCGCGCAGCACAAG
AGCGATCACCTCGCGATCGTCGAGGCTTTCAACGCCTGGCGGAACCGCAA
GACCGGCAACGGCGGCGGCGGCGTCGGCGACGGTGAACTCTGGGAGTGGT
GCCGGGAGAACTTCTTGTCTTTTTCTGTGCTCGACACGATGGAGCAATTG
CGC
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