mRNA_P-wetherbeei_contig58046.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58046.1.1
Unique NamemRNA_P-wetherbeei_contig58046.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig58046.1.1 vs. uniprot
Match: A0A7C5UFX9_9BACT (Tetratricopeptide repeat protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C5UFX9_9BACT)

HSP 1 Score: 48.9 bits (115), Expect = 1.870e-5
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   10 LARAHEMLASGEYQNARAAYDQILKAAPNDARAHLGRGMVEF-ELSKFDQAESEFRRATELDPSNV 204
            L RA  +   G Y+ A   Y +IL+  P++A AH G G+V +     F+++ SEF+RA ELDPSN+
Sbjct:   15 LRRADALRYDGHYEEAEELYLKILERDPDNAAAHHGLGLVYYLHGGDFEKSLSEFKRAVELDPSNL 80
[Close]
BLAST of mRNA_P-wetherbeei_contig58046.1.1 vs. uniprot
Match: A0A7J9Q063_9EURY (Tetratricopeptide repeat protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A7J9Q063_9EURY)

HSP 1 Score: 49.3 bits (116), Expect = 1.910e-5
Identity = 26/67 (38.81%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:   10 LARAHEMLASGEYQNARAAYDQILKAAPNDARAHLGRGMVEFELSKFDQAE--SEFRRATELDPSNV 204
            L +   +LA  EY+ AR  ++ I+KA PN+ARAH G+      + K    +    +++ATELDP+NV
Sbjct:    8 LIKGELLLAEFEYEKARKKFNDIIKANPNNARAHFGKAEASLGVQKVKAEDIMELYKKATELDPTNV 74
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58046.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7C5UFX9_9BACT1.870e-542.42Tetratricopeptide repeat protein n=1 Tax=bacterium... [more]
A0A7J9Q063_9EURY1.910e-538.81Tetratricopeptide repeat protein n=1 Tax=Euryarcha... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58046contigP-wetherbeei_contig58046:240..449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog378806.STAUR_3052
PFAMsTPR_16
Model size210
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.46e-06
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1Q9HT@1224|Proteobacteria,43EHH@68525|delta/epsilon subdivisions,2X9G1@28221|Deltaproteobacteria,2YY0N@29|Myxococcales
DescriptionTetratricopeptide repeat
Cds size183
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186860.4157386-CDS-P-wetherbeei_contig58046:239..4221683186860.4157386-CDS-P-wetherbeei_contig58046:239..422Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58046 240..422 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186860.4247324-UTR-P-wetherbeei_contig58046:422..4491683186860.4247324-UTR-P-wetherbeei_contig58046:422..449Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig58046 423..449 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58046.1.1prot_P-wetherbeei_contig58046.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58046 240..422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58046.1.1

>prot_P-wetherbeei_contig58046.1.1 ID=prot_P-wetherbeei_contig58046.1.1|Name=mRNA_P-wetherbeei_contig58046.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=61bp
MLASGEYQNARAAYDQILKAAPNDARAHLGRGMVEFELSKFDQAESEFRR
ATELDPSNVSA
back to top

mRNA from alignment at P-wetherbeei_contig58046:240..449-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58046.1.1 ID=mRNA_P-wetherbeei_contig58046.1.1|Name=mRNA_P-wetherbeei_contig58046.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig58046:240..449- (Phaeothamnion wetherbeei SAG_119_79)
GGCTCACCGCTGGCCAGGGCCCATGAGATGCTGGCCTCTGGCGAGTATCA
AAATGCCAGGGCCGCCTATGACCAGATTTTGAAGGCCGCCCCCAACGACG
CCAGGGCCCACCTGGGGCGAGGGATGGTCGAGTTCGAGCTTTCCAAGTTC
GATCAGGCCGAGTCTGAATTCCGTCGGGCCACTGAGCTTGATCCGTCCAA
CGTCTCGGCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig58046:240..449-

>mRNA_P-wetherbeei_contig58046.1.1 ID=mRNA_P-wetherbeei_contig58046.1.1|Name=mRNA_P-wetherbeei_contig58046.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig58046:240..449- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGCCTCTGGCGAGTATCAAAATGCCAGGGCCGCCTATGACCAGAT
TTTGAAGGCCGCCCCCAACGACGCCAGGGCCCACCTGGGGCGAGGGATGG
TCGAGTTCGAGCTTTCCAAGTTCGATCAGGCCGAGTCTGAATTCCGTCGG
GCCACTGAGCTTGATCCGTCCAACGTCTCGGCC
back to top