mRNA_P-wetherbeei_contig58020.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58020.1.1
Unique NamemRNA_P-wetherbeei_contig58020.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58020.1.1 vs. uniprot
Match: A0A3D2W3G0_9PROT (Uncharacterized protein n=1 Tax=Hyphomonadaceae bacterium TaxID=2026748 RepID=A0A3D2W3G0_9PROT)

HSP 1 Score: 206 bits (525), Expect = 3.310e-63
Identity = 100/166 (60.24%), Postives = 123/166 (74.10%), Query Frame = 1
Query:    1 RPKLFFKGGTSLSKGFGLIQRFSEDIDIVISRAGLGIRAADDPLHPDHSKKKREEKAAAATVKCSAHVLGKMREKLEPLLPDCTIEADDGDRDQMSLRIRYPTLLKSDPYLKPWVKVECGARGAYEPDVKRDIVPYIQDELGQKLDLAIKGVTLITAERTFWEKAL 498
            +PKLFFKGGTSLSKG+GLI RFSEDIDIV+SRAGL +R+ +DP  P  S  KR+E       KC  HV  KMRE+L  L+P C +E D  D D  SL+++YP++L +DPYL+P+VK+ECGARGA EP  +R I PY+QD LG ++DL  K VTLI A RTFWEKAL
Sbjct:   54 QPKLFFKGGTSLSKGYGLINRFSEDIDIVLSRAGLRVRSGNDPFAPSLSATKRKENFKGLIEKCGVHVTVKMRERLATLVPMCAVEVDADDPDGASLQVKYPSILPADPYLRPFVKIECGARGALEPIQRRAIAPYVQDLLGMRMDLTTKSVTLIAARRTFWEKAL 219          
BLAST of mRNA_P-wetherbeei_contig58020.1.1 vs. uniprot
Match: A0A1V1PKM1_9PROT (Uncharacterized protein n=1 Tax=alpha proteobacterium U9-1i TaxID=1605283 RepID=A0A1V1PKM1_9PROT)

HSP 1 Score: 176 bits (446), Expect = 2.730e-51
Identity = 94/166 (56.63%), Postives = 114/166 (68.67%), Query Frame = 1
Query:    1 RPKLFFKGGTSLSKGFGLIQRFSEDIDIVISRAGLGIRAADDPLHPDHSKKKREEKAAAATVKCSAHVLGKMREKLEPLLPDCTIEADDGDRDQMSLRIRYPTLLKSDPYLKPWVKVECGARGAYEPDVKRDIVPYIQDELGQKLDLAIKGVTLITAERTFWEKAL 498
            RPKL+FKGGTSLSKG+GLI+RFSEDIDIV+SR GL I    DPL    S  KR++   AA  KC A V G+MR KL  +LP C +E D  D D  +L+I YP+LL ++ Y+ PWVK+E GARGA  P  +R + PY+Q  LG   DLA K V +I AERTF EKAL
Sbjct:   60 RPKLYFKGGTSLSKGYGLIKRFSEDIDIVVSRRGLMIPDEADPL-AQASATKRKKATDAAMEKCCAFVSGRMRTKLAAMLPMCRVEVDGADEDGCTLQIHYPSLLDANSYIAPWVKIEVGARGAITPCAERAVEPYVQRVLGADWDLATKAVAMIEAERTFLEKAL 224          
BLAST of mRNA_P-wetherbeei_contig58020.1.1 vs. uniprot
Match: N0BCK3_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 TaxID=670307 RepID=N0BCK3_9HYPH)

HSP 1 Score: 148 bits (373), Expect = 2.490e-40
Identity = 84/167 (50.30%), Postives = 106/167 (63.47%), Query Frame = 1
Query:    4 PKLFFKGGTSLSKGFGLIQRFSEDIDIVISRAGLGIRAADDPLHPD--HSKKKREEKAAAATVKCSAHVLGKMREKLEPLLPDCTIEADDGDRDQMSLRIRYPTLLKSDPYLKPWVKVECGARGAYEPDVKRDIVPYIQDELG--QKLDLAIKGVTLITAERTFWEK 492
            PK FFKGGTSLSKGF LI RFSEDIDIV SR GLGI   +DP  P+   S  +R++       K + H+ GK+ +KL   LP CT+  DDGD    S+ + Y T+  +D Y KP +KVE GARGA  P +++ +VPY+QD L   QK DL I  +T+I  ERT  EK
Sbjct:   56 PKCFFKGGTSLSKGFNLINRFSEDIDIVFSRIGLGIDVTNDPTDPNCVMSNTQRKKLIDEVKSKSAGHMRGKLVKKLTNALPKCTVSFDDGDG---SVLVGYETVCDTDDYAKPRIKVEGGARGALVPTIEQRVVPYVQDLLTGKQKFDLGIDKITMIRPERTLLEK 219          
BLAST of mRNA_P-wetherbeei_contig58020.1.1 vs. uniprot
Match: A0A8I1IQJ3_9RHOB (Nucleotidyl transferase AbiEii/AbiGii toxin family protein n=3 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A8I1IQJ3_9RHOB)

HSP 1 Score: 137 bits (344), Expect = 4.890e-36
Identity = 78/169 (46.15%), Postives = 104/169 (61.54%), Query Frame = 1
Query:    4 PKLFFKGGTSLSKGFGLIQRFSEDIDIVISRAGLGIRAADDPLHPDH-SKKKREEKAAAATVKCSAHVLGKMREKLEPLLPD-CTIEADDGDRDQMSLRIRYPTLLKSD--PYLKPWVKVECGARGAYEPDVKRDIVPYIQDELGQKLDLAIKGVTLITAERTFWEKAL 498
            P+L FKGGT+LSK FGLI+RFSEDID+V+ R GLG  A  DP +P+  S KKR+         CSA++ G +   L PLL + C I  DD D DQ +L I YPTL  S   PY+ P VK+E GAR A +P+V+  + PYI  +L +     +  + +I+  RT+ EK L
Sbjct:   56 PQLLFKGGTALSKAFGLIRRFSEDIDLVVYRDGLGFGADRDPTNPEGISGKKRKALFDELKEACSAYIRGDLAAALGPLLGERCEIVPDDEDADQQTLLIEYPTLYPSADLPYVLPRVKLEAGARSALDPNVRASVTPYIAGDLAEDWSFEVSNIHVISPARTYLEKLL 224          
BLAST of mRNA_P-wetherbeei_contig58020.1.1 vs. uniprot
Match: A0A1N7QSV9_9RHOB (Nucleotidyl transferase AbiEii toxin, Type IV TA system n=5 Tax=Rhodobacterales TaxID=204455 RepID=A0A1N7QSV9_9RHOB)

HSP 1 Score: 134 bits (337), Expect = 4.410e-35
Identity = 76/169 (44.97%), Postives = 103/169 (60.95%), Query Frame = 1
Query:    4 PKLFFKGGTSLSKGFGLIQRFSEDIDIVISRAGLGIRAADDPLHPDH-SKKKREEKAAAATVKCSAHVLGKMREKLEPLLPD-CTIEADDGDRDQMSLRIRYPTLLKSDP--YLKPWVKVECGARGAYEPDVKRDIVPYIQDELGQKLDLAIKGVTLITAERTFWEKAL 498
            P+L FKGGT+LSK +GLI+RFSEDID+V+ R GLG  A  DP +P+  S KKR+         C  ++ G + E L+PLL   C+I  DD D DQ +L I YPTL  S    Y+ P VK+E GAR A +P+    ++PYI +EL      A+  + +I  +RT+ EK L
Sbjct:   56 PQLLFKGGTALSKAYGLIRRFSEDIDLVVYRDGLGFAAERDPTNPEGISNKKRKALFDDLKNACGTYIRGDLAEALKPLLDARCSIMPDDEDSDQQTLLIEYPTLYPSTEISYVLPRVKLEAGARSALDPNATTSVMPYIAEELTDGWSFAVDNIHVIAPQRTYLEKLL 224          
BLAST of mRNA_P-wetherbeei_contig58020.1.1 vs. uniprot
Match: A0A0W1GPH4_9SPHN (Uncharacterized protein n=1 Tax=Sphingopyxis sp. H071 TaxID=1759078 RepID=A0A0W1GPH4_9SPHN)

HSP 1 Score: 133 bits (335), Expect = 9.240e-35
Identity = 73/174 (41.95%), Postives = 107/174 (61.49%), Query Frame = 1
Query:    4 PKLFFKGGTSLSKGFGLIQRFSEDIDIVISRAGLGIRAADDPLHPDHSKKKREEKAAAATVKCSAHVLGKMREKLEPLLPDC---------TIEADDGDRDQMSLRIRYPTLLKSDPYLKPWVKVECGARGAYEPDVKRDIVPYIQDELGQKLDLAIKGVTLITAERTFWEKAL 498
            P+L FKGGTSLSKGFGLI+RFSEDID+ + R  LG+ A+ D L    S+KKRE    A    C A++ G + E L  +  +C         +I+     +D+ +L I YP++   D Y+   VK+E GA+ A +P+ +R I PY+ ++L   +DLA+  VT++ AERTFW+K +
Sbjct:   55 PRLLFKGGTSLSKGFGLIRRFSEDIDVTVFRDDLGVPASIDELAA-LSRKKREAALDAIRDACEAYINGALLEHLTVIAAECCERAGLKAGSIQVLPDAKDRQTLLIAYPSVTSEDAYIAKSVKIESGAKSALDPNSRRSIAPYVDEDL-PAIDLAVPNVTIVDAERTFWDKVV 226          
BLAST of mRNA_P-wetherbeei_contig58020.1.1 vs. uniprot
Match: A0A6L7UIR7_9BACT (Nucleotidyl transferase AbiEii/AbiGii toxin family protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6L7UIR7_9BACT)

HSP 1 Score: 131 bits (330), Expect = 5.350e-34
Identity = 76/172 (44.19%), Postives = 101/172 (58.72%), Query Frame = 1
Query:    4 PKLFFKGGTSLSKGFGLIQRFSEDIDIVISRAGLGIRAADDP-LHPDHSKKKREEKAAAATVKCSAHVLGKMREKLEPLL----PDCTIEADDGDRDQMSLRIRYPTL--LKSDPYLKPWVKVECGARGAYEPDVKRDIVPYIQDELGQKLDLAIKGVTLITAERTFWEKAL 498
            P+L FKGGTSLSK F LI+RFSEDID+V+ R  LG +   DP +  + S +KR +        CS +VLG+MR  L  L+      CT+  D+ D DQ ++ + YPTL  LK   Y+ P V++E GAR A +P++   + PYI  EL     L +K V  I  ERT WEK L
Sbjct:   56 PRLLFKGGTSLSKAFNLIRRFSEDIDLVVYRDDLGFQGQRDPTIASNLSNRKRNDLFKQLKASCSHYVLGEMRAALAKLMNRVGDGCTVLPDESDNDQQTILVEYPTLFPLKDVAYVAPRVRIEAGARSALDPNLTCSVTPYIAHELAD-WSLGVKHVRSIAPERTLWEKLL 226          
BLAST of mRNA_P-wetherbeei_contig58020.1.1 vs. uniprot
Match: A0A239KAU8_9SPHN (Nucleotidyl transferase AbiEii toxin, Type IV TA system n=2 Tax=Sphingopyxis TaxID=165697 RepID=A0A239KAU8_9SPHN)

HSP 1 Score: 131 bits (329), Expect = 7.090e-34
Identity = 71/174 (40.80%), Postives = 103/174 (59.20%), Query Frame = 1
Query:    4 PKLFFKGGTSLSKGFGLIQRFSEDIDIVISRAGLGIRAADDPLHPDHSKKKREEKAAAATVKCSAHVLGKMREKLEPLLPDC---------TIEADDGDRDQMSLRIRYPTLLKSDPYLKPWVKVECGARGAYEPDVKRDIVPYIQDELGQKLDLAIKGVTLITAERTFWEKAL 498
            P+L FKGGTSLSKGFGLI+RFSEDID+ + R  LG+ A  D L    S+KKRE    A    C AH+ G + + L  +   C          I+     +D+ +L + YP++   D Y+   VK+E GA+ A +P+ +R I PY+ ++L   +DL +  VT++ AERTFW+K +
Sbjct:   55 PRLLFKGGTSLSKGFGLIRRFSEDIDVTVFRDDLGVPATIDELAA-LSRKKREAALDAIRDACEAHINGALLDHLTVIAAQCCERAGLEAGAIKVIPDAKDRQTLLVAYPSVTSEDAYIAKSVKIESGAKSALDPNSRRSIAPYVDEDL-PTIDLGVPNVTIVDAERTFWDKVV 226          
BLAST of mRNA_P-wetherbeei_contig58020.1.1 vs. uniprot
Match: A0A6N9CEA3_9BACT (Nucleotidyl transferase AbiEii/AbiGii toxin family protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A6N9CEA3_9BACT)

HSP 1 Score: 129 bits (324), Expect = 3.790e-33
Identity = 75/172 (43.60%), Postives = 98/172 (56.98%), Query Frame = 1
Query:    4 PKLFFKGGTSLSKGFGLIQRFSEDIDIVISRAGLGIRAADDP-LHPDHSKKKREEKAAAATVKCSAHVLGKMR----EKLEPLLPDCTIEADDGDRDQMSLRIRYPTLLKSDP--YLKPWVKVECGARGAYEPDVKRDIVPYIQDELGQKLDLAIKGVTLITAERTFWEKAL 498
            P+L FKGGTSLSK FGLI+RFSEDID+V+ R GLG     DP +    S KKR          CS ++ G +R     +++ L   C I  D+GD D+ +L I YPTL  S+   Y+ P VK+E GAR A +P     + PYI D+L         G+ +I  ERT+WEK L
Sbjct:   56 PRLLFKGGTSLSKAFGLIKRFSEDIDLVVFRDGLGFEGERDPTVDSQLSNKKRATLFKELRAACSGYIHGALRTALASRIDELPTSCQIVPDEGDVDRQTLFIEYPTLFPSEDITYVAPCVKIEAGARSALDPSQHCTVTPYIVDDLPD-WSFTAAGIRVIAPERTYWEKLL 226          
BLAST of mRNA_P-wetherbeei_contig58020.1.1 vs. uniprot
Match: A0A844YT23_9SPHN (Nucleotidyl transferase AbiEii/AbiGii toxin family protein n=3 Tax=Sphingomonadales TaxID=204457 RepID=A0A844YT23_9SPHN)

HSP 1 Score: 129 bits (323), Expect = 5.420e-33
Identity = 73/174 (41.95%), Postives = 103/174 (59.20%), Query Frame = 1
Query:    4 PKLFFKGGTSLSKGFGLIQRFSEDIDIVISRAGLGIRAADDPLHPDHSKKKREEKAAAATVKCSAHVLGKMREKLEPLLPDC---------TIEADDGDRDQMSLRIRYPTLLKSDPYLKPWVKVECGARGAYEPDVKRDIVPYIQDELGQKLDLAIKGVTLITAERTFWEKAL 498
            P+L FKGGTSLSKGFGLI+RFSEDID+ + R  LG+ A    L    S+KKR+    +    C AH+ G ++ +L  +  D          +I  +   RD  +L + YP++   D Y+   VK+E GA+ A +P+  R IVPY+ D     LDLA+ GVT++ AERTFW+K +
Sbjct:   55 PRLLFKGGTSLSKGFGLIERFSEDIDVTVFRDDLGVPATIAELAA-LSRKKRDAALDSIKAACEAHINGPLKARLAQICADTCARAGLEAQSIRVEADARDGQTLLLVYPSITPEDAYIAKSVKIESGAKSALDPNSVRTIVPYV-DADAVDLDLAVPGVTVVDAERTFWDKVV 226          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58020.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D2W3G0_9PROT3.310e-6360.24Uncharacterized protein n=1 Tax=Hyphomonadaceae ba... [more]
A0A1V1PKM1_9PROT2.730e-5156.63Uncharacterized protein n=1 Tax=alpha proteobacter... [more]
N0BCK3_9HYPH2.490e-4050.30Uncharacterized protein n=1 Tax=Hyphomicrobium den... [more]
A0A8I1IQJ3_9RHOB4.890e-3646.15Nucleotidyl transferase AbiEii/AbiGii toxin family... [more]
A0A1N7QSV9_9RHOB4.410e-3544.97Nucleotidyl transferase AbiEii toxin, Type IV TA s... [more]
A0A0W1GPH4_9SPHN9.240e-3541.95Uncharacterized protein n=1 Tax=Sphingopyxis sp. H... [more]
A0A6L7UIR7_9BACT5.350e-3444.19Nucleotidyl transferase AbiEii/AbiGii toxin family... [more]
A0A239KAU8_9SPHN7.090e-3440.80Nucleotidyl transferase AbiEii toxin, Type IV TA s... [more]
A0A6N9CEA3_9BACT3.790e-3343.60Nucleotidyl transferase AbiEii/AbiGii toxin family... [more]
A0A844YT23_9SPHN5.420e-3341.95Nucleotidyl transferase AbiEii/AbiGii toxin family... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58020contigP-wetherbeei_contig58020:1..498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog670307.HYPDE_32943
PFAMsAbiEii
Model size498
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.09e-41
EggNOG OGsCOG2253@1|root,COG2253@2|Bacteria,1PZRM@1224|Proteobacteria,2TTHC@28211|Alphaproteobacteria,3N8Q7@45401|Hyphomicrobiaceae
DescriptionNucleotidyl transferase AbiEii toxin, Type IV TA system
Cds size498
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186860.145661-CDS-P-wetherbeei_contig58020:0..4981683186860.145661-CDS-P-wetherbeei_contig58020:0..498Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58020 1..498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58020.1.1prot_P-wetherbeei_contig58020.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58020 1..498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58020.1.1

>prot_P-wetherbeei_contig58020.1.1 ID=prot_P-wetherbeei_contig58020.1.1|Name=mRNA_P-wetherbeei_contig58020.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
RPKLFFKGGTSLSKGFGLIQRFSEDIDIVISRAGLGIRAADDPLHPDHSK
KKREEKAAAATVKCSAHVLGKMREKLEPLLPDCTIEADDGDRDQMSLRIR
YPTLLKSDPYLKPWVKVECGARGAYEPDVKRDIVPYIQDELGQKLDLAIK
GVTLITAERTFWEKAL
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mRNA from alignment at P-wetherbeei_contig58020:1..498-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58020.1.1 ID=mRNA_P-wetherbeei_contig58020.1.1|Name=mRNA_P-wetherbeei_contig58020.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig58020:1..498- (Phaeothamnion wetherbeei SAG_119_79)
AGGCCCAAGCTGTTCTTCAAGGGCGGCACCTCGCTGTCCAAAGGGTTCGG GCTGATCCAGCGCTTCTCCGAGGATATCGACATCGTCATCTCGCGTGCGG GGCTCGGCATCCGCGCCGCCGATGATCCCCTGCATCCCGATCATTCGAAG AAGAAGCGCGAGGAGAAAGCCGCCGCTGCTACCGTGAAATGTAGCGCGCA TGTGCTCGGCAAAATGCGCGAAAAGCTTGAACCACTGCTGCCGGATTGCA CCATCGAAGCCGACGACGGCGATCGTGATCAGATGTCGTTGCGAATCCGC TATCCGACGCTACTGAAGTCGGACCCCTACCTGAAGCCGTGGGTGAAGGT TGAATGCGGCGCGCGCGGCGCCTACGAGCCGGACGTCAAGCGCGACATCG TCCCTTACATCCAGGACGAGCTTGGCCAGAAACTCGACCTCGCCATCAAG GGTGTCACGCTGATCACCGCCGAGCGGACCTTCTGGGAGAAGGCGCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58020:1..498-

>mRNA_P-wetherbeei_contig58020.1.1 ID=mRNA_P-wetherbeei_contig58020.1.1|Name=mRNA_P-wetherbeei_contig58020.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig58020:1..498- (Phaeothamnion wetherbeei SAG_119_79)
AGGCCCAAGCTGTTCTTCAAGGGCGGCACCTCGCTGTCCAAAGGGTTCGG
GCTGATCCAGCGCTTCTCCGAGGATATCGACATCGTCATCTCGCGTGCGG
GGCTCGGCATCCGCGCCGCCGATGATCCCCTGCATCCCGATCATTCGAAG
AAGAAGCGCGAGGAGAAAGCCGCCGCTGCTACCGTGAAATGTAGCGCGCA
TGTGCTCGGCAAAATGCGCGAAAAGCTTGAACCACTGCTGCCGGATTGCA
CCATCGAAGCCGACGACGGCGATCGTGATCAGATGTCGTTGCGAATCCGC
TATCCGACGCTACTGAAGTCGGACCCCTACCTGAAGCCGTGGGTGAAGGT
TGAATGCGGCGCGCGCGGCGCCTACGAGCCGGACGTCAAGCGCGACATCG
TCCCTTACATCCAGGACGAGCTTGGCCAGAAACTCGACCTCGCCATCAAG
GGTGTCACGCTGATCACCGCCGAGCGGACCTTCTGGGAGAAGGCGCTC
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