mRNA_P-wetherbeei_contig58018.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58018.1.1
Unique NamemRNA_P-wetherbeei_contig58018.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58018.1.1 vs. uniprot
Match: A0A3C1L9Y7_9ACTN (Pyr_redox_2 domain-containing protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C1L9Y7_9ACTN)

HSP 1 Score: 202 bits (514), Expect = 1.450e-61
Identity = 113/172 (65.70%), Postives = 135/172 (78.49%), Query Frame = 1
Query:    7 RAGVDVRTGVTVASISNGTVAMT--TG-SAIEASAIVVATGVRERPRSARLVPGDRPAGVFTTGALQQFVQRGLH---VGERAVVVGAEHVSFSAIATLAHAGCRTVAMVTALPRHQSYAPLRWATATRHRVPLLTGVDVANVLGHGRVESVELTDGQLVACDTVVFTGDWV 504
            RAGV++  G TV S ++G+V  T  TG + ++A A+++ATGVRERPR+ARLVPGDRPAGV TTGALQQF    LH   VG RAV+VGAEHVSFSA+ TLAH GC   AMVT LPRHQ+YAPLR ATA RHRVP+ TGV VA ++G  RVE+V L+DG+ + CDTVVFTGDWV
Sbjct:   40 RAGVEIEVGRTVHSCADGSVTTTGATGPTTVQAGAVMLATGVRERPRAARLVPGDRPAGVLTTGALQQFAA--LHHQRVGTRAVIVGAEHVSFSAVLTLAHGGCTVAAMVTPLPRHQTYAPLRVATAARHRVPIHTGVAVAEIVGGARVEAVVLSDGRRIECDTVVFTGDWV 209          
BLAST of mRNA_P-wetherbeei_contig58018.1.1 vs. uniprot
Match: A0A7K0VHF2_9ACTN (FAD-dependent oxidoreductase n=2 Tax=root TaxID=1 RepID=A0A7K0VHF2_9ACTN)

HSP 1 Score: 184 bits (466), Expect = 1.600e-53
Identity = 104/170 (61.18%), Postives = 124/170 (72.94%), Query Frame = 1
Query:   10 AGVDVRTGVTVASISNGT---VAMTTG-SAIEASAIVVATGVRERPRSARLVPGDRPAGVFTTGALQQFV-QRGLHVGERAVVVGAEHVSFSAIATLAHAGCRTVAMVTALPRHQSYAPLRWATATRHRVPLLTGVDVANVLGHGRVESVELTDGQLVACDTVVFTGDWV 504
            AG+ VRT  T     + T   +A  TG S + A  +V+ATGVRERPR+ARLV GDR AG+FTTG+LQQ         G RA++VGAEHVSFSA+ TL HAGC  VAMVT LP HQSYAPLR ATATRHRVP++TG +VA + G  RVE+V LT+GQ + CDTVVFTGDW+
Sbjct:   81 AGITVRTATTAVDWLDDTGLQIADATGISTVAARCVVLATGVRERPRAARLVAGDRGAGIFTTGSLQQLTANHHQRPGTRALIVGAEHVSFSAVLTLRHAGCDVVAMVTPLPCHQSYAPLRAATATRHRVPIITGTNVAEIHGRKRVEAVTLTNGQRIECDTVVFTGDWI 250          
BLAST of mRNA_P-wetherbeei_contig58018.1.1 vs. uniprot
Match: A0A6I3WW64_9ACTN (FAD-binding protein n=2 Tax=root TaxID=1 RepID=A0A6I3WW64_9ACTN)

HSP 1 Score: 174 bits (442), Expect = 5.090e-50
Identity = 99/173 (57.23%), Postives = 121/173 (69.94%), Query Frame = 1
Query:    7 RAGVDVRTGVTVASISNGTVAMTTG----SAIEASAIVVATGVRERPRSARLVPGDRPAGVFTTGALQQFVQRGLHVGE---RAVVVGAEHVSFSAIATLAHAGCRTVAMVTALPRHQSYAPLRWATATRHRVPLLTGVDVANVLGHGRVESVELTDGQLVACDTVVFTGDWV 504
            +AGVD+RT  T    +  T   T      S I A A+V+ATGVRERPR+A LVPGDR  GVFTTG+LQQ     +H G+   RAV+VGA+HVSFSA+ TL HA CRTVAMVT L RHQ+YAPLR  TA RHRVP++TG  V  + G   V +V L++G+ + CDTVVFTGDW+
Sbjct:   78 QAGVDIRTATTATDWTGATSLQTVNRHGMSNIHARAVVLATGVRERPRAALLVPGDRGGGVFTTGSLQQLTT--IHHGQPGTRAVIVGAQHVSFSAVLTLQHAACRTVAMVTPLTRHQTYAPLRLLTAGRHRVPIITGCTVEAIHGRDHVRAVTLSNGRRIDCDTVVFTGDWI 248          
BLAST of mRNA_P-wetherbeei_contig58018.1.1 vs. uniprot
Match: A0A538KGZ1_9ACTN (FAD-dependent oxidoreductase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538KGZ1_9ACTN)

HSP 1 Score: 160 bits (406), Expect = 1.060e-44
Identity = 85/144 (59.03%), Postives = 101/144 (70.14%), Query Frame = 1
Query:   88 IEASAIVVATGVRERPRSARLVPGDRPAGVFTTGALQQFVQRGLHVGERAVVVGAEHVSFSAIATLAHAGCRTVAMVTALPRHQSYAPLRWATATRHRVPLLTGVDVANVLGHGRVESVELTD-----GQLVACDTVVFTGDWV 504
            + A AIV+ATG RERPRSARLVPG RP GV TTG LQQ   +G+ VG RA+VVGAEHVSFSA+ TLAHAG + V M T LPRHQ+ AP R   A R+R PL T   +  + G  RVE VEL +      +++ACDTVVFT DW+
Sbjct:  104 MRAPAIVLATGCRERPRSARLVPGSRPEGVMTTGMLQQLALKGMPVGSRALVVGAEHVSFSAVLTLAHAGAKVVGMTTELPRHQTLAPFRVGAALRYRFPLWTRTAITRISGRLRVEEVELLELESSQKRVIACDTVVFTADWI 247          
BLAST of mRNA_P-wetherbeei_contig58018.1.1 vs. uniprot
Match: A0A388NQL2_9CHLR (Opine oxidase subunit A n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A388NQL2_9CHLR)

HSP 1 Score: 157 bits (397), Expect = 2.870e-44
Identity = 91/156 (58.33%), Postives = 107/156 (68.59%), Query Frame = 1
Query:   67 AMTTGSAIE---ASAIVVATGVRERPRSARLVPGDRPAGVFTTGALQQFVQRGLH---VGERAVVVGAEHVSFSAIATLAHAGCRTVAMVTALPRHQSYAPLRWATATRHRVPLLTGVDVANVLGHGRVESVELTDGQ----LVACDTVVFTGDWV 504
            A+T+G  +E   A A+V+ATG RER R+AR VPG RPAG++TTGALQQ V   LH   +G+RAVVVGAEHVSFSA+ TL HAG RTVAMVT  P HQSY PLRW TA  +   L+T   V  + G  RVE V +   Q     + CDTVVFTGDWV
Sbjct:   98 ALTSGRGLEEVQARAVVLATGARERGRNARAVPGTRPAGIYTTGALQQAVY--LHQQYIGKRAVVVGAEHVSFSAVITLGHAGVRTVAMVTGEPAHQSYFPLRWGTAALYGYQLITKALVVGIAGAARVEGVRVRKAQGVERFIECDTVVFTGDWV 251          
BLAST of mRNA_P-wetherbeei_contig58018.1.1 vs. uniprot
Match: UPI00200F26CF (FAD-dependent oxidoreductase n=1 Tax=Sphaerisporangium sp. NEAU-ZS1 TaxID=2935860 RepID=UPI00200F26CF)

HSP 1 Score: 165 bits (418), Expect = 3.090e-44
Identity = 99/177 (55.93%), Postives = 118/177 (66.67%), Query Frame = 1
Query:    1 AVRAGVDVRTGVTVASISNGTVAMTTGSA----IEASAIVVATGVRERPRSARLVPGDRPAGVFTTGALQQFVQ-RGLHVGERAVVVGAEHVSFSAIATLAHAGCRTVAMVTALPRHQSYAPLRWATATRHRVPLLTGVDVANVLGHGRVESVEL--TDG--QLVACDTVVFTGDWV 504
            A  AG  VRTGVT    +      TTG      I A A+V+ATG RERPRSARLVPG RPAGV+TTG LQQ V  RG  VG+RAV+VGAEHVS+SA+ TL HAG R  AMVT LPR QSYA  R     R+R PLLTG  V  ++G  R++ VE+   DG  +++  DT+VFTGDW+
Sbjct:  603 AAAAGATVRTGVTATGWAGPLTLETTGPGGLERITAGAVVLATGARERPRSARLVPGTRPAGVYTTGMLQQAVYLRGQSVGKRAVIVGAEHVSYSAVLTLDHAGVRVAAMVTDLPRQQSYAAFRLGAGVRYRFPLLTGTTVTGLVGRARLQGVEVRRADGRVEVIEADTIVFTGDWI 779          
BLAST of mRNA_P-wetherbeei_contig58018.1.1 vs. uniprot
Match: A0A534TA82_9DELT (FAD-dependent oxidoreductase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534TA82_9DELT)

HSP 1 Score: 159 bits (403), Expect = 3.270e-44
Identity = 100/175 (57.14%), Postives = 120/175 (68.57%), Query Frame = 1
Query:   10 AGVDVRTGVTVASISNG-TVAMT--TG-SAIEASAIVVATGVRERPRSARLVPGDRPAGVFTTGALQQFVQ-RGLHVGERAVVVGAEHVSFSAIATLAHAGCRTVAMVTALPRHQSYAPLRWATATRHRVPLLTGVDVANVLGHGRVESVELTD-----GQLVACDTVVFTGDWV 504
            AGVDVRT  +V   +   T+A+T  TG  ++  +A+++ATG RERPR+ARLVPG RP GVFTTGALQQ V      V  RAVVVGAEHVSFSA+ TLAH G  T A+VT  PRHQSY  L WATA   RVP+LT   V++++G  RVE VELT+        V CD VVFTGDW+
Sbjct:   77 AGVDVRTETSVTGWAGPRTLAITAPTGRGSLRGTAVLLATGCRERPRAARLVPGARPLGVFTTGALQQLVYLEKERVARRAVVVGAEHVSFSAVVTLAHVGATTAAIVTDEPRHQSYGALAWATAGWRRVPILTDTVVSSIVGRRRVERVELTNVASGATHAVDCDAVVFTGDWI 251          
BLAST of mRNA_P-wetherbeei_contig58018.1.1 vs. uniprot
Match: A0A538K0Z9_9ACTN (FAD-dependent oxidoreductase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538K0Z9_9ACTN)

HSP 1 Score: 158 bits (399), Expect = 1.080e-43
Identity = 87/145 (60.00%), Postives = 102/145 (70.34%), Query Frame = 1
Query:   85 AIEASAIVVATGVRERPRSARLVPGDRPAGVFTTGALQQFVQRGLHVGERAVVVGAEHVSFSAIATLAHAGCRTVAMVTALPRHQSYAPLRWATATRHRVPLLTGVDVANVLGHGRVESVELTD-----GQLVACDTVVFTGDWV 504
            A+ ASAIV+ATG RERPR+ARLVPG RP GVFTTG LQQ  Q+ L +G RA++VGAEHVSFSA+ TL HAG   V MVT   RHQS      A A R+R PL T  +VA + G GRVE V+L +      + VACDTVVFTGDW+
Sbjct:  102 ALTASAIVLATGCRERPRAARLVPGSRPEGVFTTGLLQQLAQQELPIGRRALIVGAEHVSFSALLTLVHAGVDVVGMVTPYRRHQSLPFAGTAAALRYRTPLSTRTEVAAIHGRGRVEEVDLLELDTGRARQVACDTVVFTGDWI 246          
BLAST of mRNA_P-wetherbeei_contig58018.1.1 vs. uniprot
Match: A0A7W0H2G2_9ACTN (FAD-dependent oxidoreductase (Fragment) n=1 Tax=Thermoleophilaceae bacterium TaxID=2732252 RepID=A0A7W0H2G2_9ACTN)

HSP 1 Score: 155 bits (393), Expect = 1.800e-43
Identity = 87/147 (59.18%), Postives = 104/147 (70.75%), Query Frame = 1
Query:   82 SAIEASAIVVATGVRERPRSARLVPGDRPAGVFTTGALQQFVQ-RGLHVGERAVVVGAEHVSFSAIATLAHAGCRTVAMVTALPRHQSYAPLRWATATRHRVPLLTGVDVANVLGHGRVESVELTD-----GQLVACDTVVFTGDWV 504
            S ++ +A+V+ATG RERPRS+RLVPG RP GV TTG +QQ V  +GL  G RA+VVGAEHVSFSAIATLAH G RT A+ T L RHQS A +R     R+RVP+ T   V+ + G  RVE VELTD      + VACDTVVFT DW+
Sbjct:  104 STLQPAAVVLATGCRERPRSSRLVPGSRPDGVMTTGMVQQLVYLQGLPAGRRALVVGAEHVSFSAIATLAHGGARTTALTTELARHQSLAAVRLGALARYRVPVWTRTRVSAIHGRPRVEEVELTDLDGGGTRTVACDTVVFTDDWI 250          
BLAST of mRNA_P-wetherbeei_contig58018.1.1 vs. uniprot
Match: A0A538ACX2_9ACTN (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538ACX2_9ACTN)

HSP 1 Score: 155 bits (392), Expect = 1.550e-42
Identity = 90/145 (62.07%), Postives = 99/145 (68.28%), Query Frame = 1
Query:   88 IEASAIVVATGVRERPRSARLVPGDRPAGVFTTGALQQFVQR-GLHVGERAVVVGAEHVSFSAIATLAHAGCRTVAMVTALPRHQSYAPLRWATATRHRVPLLTGVDVANVLGHGRVESVELTD---GQL--VACDTVVFTGDWV 504
            I   A+V+ATG RERPRSARLVPG RP GV TTG LQQ V+  G+ VG+RAVVVGAEHVSFSA+ TLA  G   V M T LPRHQS A  R   A R+RVPL T   V  + G  RVE VEL D   GQ   VACDTVVFT DW+
Sbjct:  103 IRPDAVVLATGCRERPRSARLVPGSRPEGVLTTGQLQQLVELYGVQVGKRAVVVGAEHVSFSAVVTLARGGADVVGMTTELPRHQSLAVFRAGAALRYRVPLWTRTAVTGIHGRPRVEEVELVDLDSGQTRSVACDTVVFTADWI 247          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58018.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C1L9Y7_9ACTN1.450e-6165.70Pyr_redox_2 domain-containing protein (Fragment) n... [more]
A0A7K0VHF2_9ACTN1.600e-5361.18FAD-dependent oxidoreductase n=2 Tax=root TaxID=1 ... [more]
A0A6I3WW64_9ACTN5.090e-5057.23FAD-binding protein n=2 Tax=root TaxID=1 RepID=A0A... [more]
A0A538KGZ1_9ACTN1.060e-4459.03FAD-dependent oxidoreductase n=1 Tax=Actinomycetia... [more]
A0A388NQL2_9CHLR2.870e-4458.33Opine oxidase subunit A n=1 Tax=Chloroflexi bacter... [more]
UPI00200F26CF3.090e-4455.93FAD-dependent oxidoreductase n=1 Tax=Sphaerisporan... [more]
A0A534TA82_9DELT3.270e-4457.14FAD-dependent oxidoreductase n=1 Tax=Deltaproteoba... [more]
A0A538K0Z9_9ACTN1.080e-4360.00FAD-dependent oxidoreductase n=1 Tax=Actinomycetia... [more]
A0A7W0H2G2_9ACTN1.800e-4359.18FAD-dependent oxidoreductase (Fragment) n=1 Tax=Th... [more]
A0A538ACX2_9ACTN1.550e-4262.07NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Actino... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58018contigP-wetherbeei_contig58018:3..506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1380347.JNII01000005_gene3050
PFAMsPyr_redox_2
Model size504
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.99e-46
EggNOG OGsCOG0446@1|root,COG0446@2|Bacteria,2GKQN@201174|Actinobacteria
Descriptionpyridine nucleotide-disulfide oxidoreductase
Cds size504
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186860.1168396-CDS-P-wetherbeei_contig58018:2..5061683186860.1168396-CDS-P-wetherbeei_contig58018:2..506Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58018 3..506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58018.1.1prot_P-wetherbeei_contig58018.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58018 3..506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58018.1.1

>prot_P-wetherbeei_contig58018.1.1 ID=prot_P-wetherbeei_contig58018.1.1|Name=mRNA_P-wetherbeei_contig58018.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
AVRAGVDVRTGVTVASISNGTVAMTTGSAIEASAIVVATGVRERPRSARL
VPGDRPAGVFTTGALQQFVQRGLHVGERAVVVGAEHVSFSAIATLAHAGC
RTVAMVTALPRHQSYAPLRWATATRHRVPLLTGVDVANVLGHGRVESVEL
TDGQLVACDTVVFTGDWV
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mRNA from alignment at P-wetherbeei_contig58018:3..506+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58018.1.1 ID=mRNA_P-wetherbeei_contig58018.1.1|Name=mRNA_P-wetherbeei_contig58018.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig58018:3..506+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGTGCGCGCCGGCGTCGACGTGCGCACCGGGGTCACCGTCGCATCGAT CTCCAACGGAACGGTTGCGATGACGACCGGATCAGCGATCGAGGCCTCGG CGATCGTCGTTGCGACCGGCGTGCGCGAGCGACCCCGATCTGCGCGGCTC GTTCCCGGCGACCGACCCGCCGGCGTGTTCACGACCGGCGCGCTGCAGCA GTTCGTGCAGCGCGGGCTGCACGTCGGCGAGCGGGCCGTCGTCGTCGGTG CCGAGCACGTCAGCTTCTCGGCGATCGCCACGCTCGCCCACGCCGGTTGC CGGACAGTTGCGATGGTCACTGCGCTCCCTCGCCACCAGTCGTACGCACC GCTGCGTTGGGCCACGGCAACACGGCATCGCGTGCCGTTGCTCACCGGCG TCGACGTGGCCAACGTGCTCGGCCACGGCCGGGTCGAGTCGGTCGAGCTG ACCGACGGGCAACTCGTGGCGTGTGACACCGTCGTGTTCACCGGGGACTG GGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58018:3..506+

>mRNA_P-wetherbeei_contig58018.1.1 ID=mRNA_P-wetherbeei_contig58018.1.1|Name=mRNA_P-wetherbeei_contig58018.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig58018:3..506+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGTGCGCGCCGGCGTCGACGTGCGCACCGGGGTCACCGTCGCATCGAT
CTCCAACGGAACGGTTGCGATGACGACCGGATCAGCGATCGAGGCCTCGG
CGATCGTCGTTGCGACCGGCGTGCGCGAGCGACCCCGATCTGCGCGGCTC
GTTCCCGGCGACCGACCCGCCGGCGTGTTCACGACCGGCGCGCTGCAGCA
GTTCGTGCAGCGCGGGCTGCACGTCGGCGAGCGGGCCGTCGTCGTCGGTG
CCGAGCACGTCAGCTTCTCGGCGATCGCCACGCTCGCCCACGCCGGTTGC
CGGACAGTTGCGATGGTCACTGCGCTCCCTCGCCACCAGTCGTACGCACC
GCTGCGTTGGGCCACGGCAACACGGCATCGCGTGCCGTTGCTCACCGGCG
TCGACGTGGCCAACGTGCTCGGCCACGGCCGGGTCGAGTCGGTCGAGCTG
ACCGACGGGCAACTCGTGGCGTGTGACACCGTCGTGTTCACCGGGGACTG
GGTG
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