mRNA_P-wetherbeei_contig58015.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58015.1.1
Unique NamemRNA_P-wetherbeei_contig58015.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58015.1.1 vs. uniprot
Match: A0A7K1B565_9ACTN (Riboflavin biosynthesis protein n=2 Tax=root TaxID=1 RepID=A0A7K1B565_9ACTN)

HSP 1 Score: 270 bits (691), Expect = 5.380e-89
Identity = 131/148 (88.51%), Postives = 140/148 (94.59%), Query Frame = 1
Query:    1 VSSTAIRRAMAGGNVELAAAMLGRPFEARGPVVHGDQRGRLLGFPTANVEVPNAMCLPADGVYAGWYLRPDGDRHPCAINLGRRPTFYEHADHSLLEAHLLDFDGDLYAEEAQVQFTNFLRSERKFEGIDSLIAQLKQDIEHARSALG 444
            +SSTAIRRAMAGG VELAAAMLGRPF+ARGPVV GDQRGRLLGFPTANVEVPNA+CLPADGVYAGWYLRPDGDR  CAINLGRRPTFYEHADHSLLEAHLLDF GDLY E A+V+FT+FLRSERKF+GID+L+AQLKQDIEHARS LG
Sbjct:  166 LSSTAIRRAMAGGQVELAAAMLGRPFQARGPVVQGDQRGRLLGFPTANVEVPNAICLPADGVYAGWYLRPDGDRRACAINLGRRPTFYEHADHSLLEAHLLDFTGDLYGEHAKVEFTHFLRSERKFDGIDALVAQLKQDIEHARSVLG 313          
BLAST of mRNA_P-wetherbeei_contig58015.1.1 vs. uniprot
Match: A0A3C2AZT9_9ACTN (Riboflavin biosynthesis protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2AZT9_9ACTN)

HSP 1 Score: 258 bits (658), Expect = 5.470e-84
Identity = 126/148 (85.14%), Postives = 134/148 (90.54%), Query Frame = 1
Query:    1 VSSTAIRRAMAGGNVELAAAMLGRPFEARGPVVHGDQRGRLLGFPTANVEVPNAMCLPADGVYAGWYLRPDGDRHPCAINLGRRPTFYEHADHSLLEAHLLDFDGDLYAEEAQVQFTNFLRSERKFEGIDSLIAQLKQDIEHARSALG 444
            +SSTAIRRAMAGG VELAA +LG PFEARG VV GDQRGRLLGFPTANVEVPNA+CLPADGVYAGWYLRPDG RH CAINLGRRPTFYEHADHSLLEAHLLDF GDLY E A+VQFT+FLRSERKF+GID+L  QL+ DIEHARS LG
Sbjct:  166 ISSTAIRRAMAGGQVELAARLLGHPFEARGSVVTGDQRGRLLGFPTANVEVPNAICLPADGVYAGWYLRPDGSRHQCAINLGRRPTFYEHADHSLLEAHLLDFSGDLYGEPARVQFTHFLRSERKFDGIDALRTQLQADIEHARSVLG 313          
BLAST of mRNA_P-wetherbeei_contig58015.1.1 vs. uniprot
Match: A0A7X9KN31_9ACTN (Riboflavin biosynthesis protein n=3 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9KN31_9ACTN)

HSP 1 Score: 249 bits (637), Expect = 8.360e-81
Identity = 120/147 (81.63%), Postives = 133/147 (90.48%), Query Frame = 1
Query:    1 VSSTAIRRAMAGGNVELAAAMLGRPFEARGPVVHGDQRGRLLGFPTANVEVPNAMCLPADGVYAGWYLRPDGDRHPCAINLGRRPTFYEHADHSLLEAHLLDFDGDLYAEEAQVQFTNFLRSERKFEGIDSLIAQLKQDIEHARSAL 441
            +SSTAIRRAMAGG VELAA +LG PFEARG VV GDQRGRLLGFPTANVEVP A+C+PADGVYAGWY RPDG RH CAINLGRRPTFYEHA+HSLLEAHLLDF+GDLY E A+V+FTNFLRSERKF+GID+LI+QLK D++HAR  L
Sbjct:  166 ISSTAIRRAMAGGQVELAATLLGHPFEARGVVVQGDQRGRLLGFPTANVEVPIAVCVPADGVYAGWYHRPDGSRHACAINLGRRPTFYEHAEHSLLEAHLLDFNGDLYTEAARVEFTNFLRSERKFDGIDALISQLKNDVDHARVVL 312          
BLAST of mRNA_P-wetherbeei_contig58015.1.1 vs. uniprot
Match: A0A4V3EJ40_9ACTN (Riboflavin biosynthesis protein n=1 Tax=Ilumatobacter fluminis TaxID=467091 RepID=A0A4V3EJ40_9ACTN)

HSP 1 Score: 248 bits (632), Expect = 4.790e-80
Identity = 118/148 (79.73%), Postives = 132/148 (89.19%), Query Frame = 1
Query:    1 VSSTAIRRAMAGGNVELAAAMLGRPFEARGPVVHGDQRGRLLGFPTANVEVPNAMCLPADGVYAGWYLRPDGDRHPCAINLGRRPTFYEHADHSLLEAHLLDFDGDLYAEEAQVQFTNFLRSERKFEGIDSLIAQLKQDIEHARSALG 444
            VSSTAIRRA+AGGNVE+A+AML RPFEARG VV GDQRGRLLGFPTANVEVPN  CLPADGVYAGWY RPDG  HPCAINLGRRPTFYEHAD SLLEAHL+ F+GDLY E A+++FTNFLRSERKF+GID+L+AQL  D++HA+  LG
Sbjct:  166 VSSTAIRRALAGGNVEMASAMLTRPFEARGKVVQGDQRGRLLGFPTANVEVPNRTCLPADGVYAGWYERPDGTTHPCAINLGRRPTFYEHADSSLLEAHLIGFEGDLYGEAAKIRFTNFLRSERKFDGIDALVAQLNADVDHAKELLG 313          
BLAST of mRNA_P-wetherbeei_contig58015.1.1 vs. uniprot
Match: A0A848UJI5_9ACTN (Riboflavin biosynthesis protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A848UJI5_9ACTN)

HSP 1 Score: 246 bits (629), Expect = 1.360e-79
Identity = 118/147 (80.27%), Postives = 130/147 (88.44%), Query Frame = 1
Query:    1 VSSTAIRRAMAGGNVELAAAMLGRPFEARGPVVHGDQRGRLLGFPTANVEVPNAMCLPADGVYAGWYLRPDGDRHPCAINLGRRPTFYEHADHSLLEAHLLDFDGDLYAEEAQVQFTNFLRSERKFEGIDSLIAQLKQDIEHARSAL 441
            VSSTAIRRA+AGGNV LAA +LGRPFEARG VV GDQRGRLLGFPTANVEVP  +CLPADGVYAGWY RP+G+R+PCAINLGRRPTFYEHADHSLLEAHL+ FDG+LY E A VQF  FLRSERKF+GID+L+ QLK D+EHAR  L
Sbjct:  166 VSSTAIRRALAGGNVTLAAELLGRPFEARGVVVQGDQRGRLLGFPTANVEVPTRVCLPADGVYAGWYERPNGERYPCAINLGRRPTFYEHADHSLLEAHLIGFDGELYGERAHVQFVGFLRSERKFDGIDALVEQLKHDVEHARKVL 312          
BLAST of mRNA_P-wetherbeei_contig58015.1.1 vs. uniprot
Match: A0A6I3C804_9ACTN (Riboflavin biosynthesis protein n=2 Tax=root TaxID=1 RepID=A0A6I3C804_9ACTN)

HSP 1 Score: 244 bits (622), Expect = 2.070e-78
Identity = 118/147 (80.27%), Postives = 131/147 (89.12%), Query Frame = 1
Query:    1 VSSTAIRRAMAGGNVELAAAMLGRPFEARGPVVHGDQRGRLLGFPTANVEVPNAMCLPADGVYAGWYLRPDGDRHPCAINLGRRPTFYEHADHSLLEAHLLDFDGDLYAEEAQVQFTNFLRSERKFEGIDSLIAQLKQDIEHARSAL 441
            +SSTAIRRA+AGG VELAA +LG  FEARGPVV GDQRGR LGFPTANVEV N +C+PADGVYAGWY RPDG  HPCAINLGRRPTF+EHADHSLLEAHL+DF GDLY E A+VQFT+FLRSERKF+GID+LI QLKQDIE+AR+ L
Sbjct:  173 ISSTAIRRALAGGQVELAAQLLGHAFEARGPVVKGDQRGRQLGFPTANVEVSNQLCVPADGVYAGWYQRPDGVTHPCAINLGRRPTFFEHADHSLLEAHLIDFTGDLYTEAARVQFTHFLRSERKFDGIDALITQLKQDIENARAVL 319          
BLAST of mRNA_P-wetherbeei_contig58015.1.1 vs. uniprot
Match: A0A6N2DF25_9ACTN (Riboflavin biosynthesis protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DF25_9ACTN)

HSP 1 Score: 243 bits (621), Expect = 2.600e-78
Identity = 118/147 (80.27%), Postives = 130/147 (88.44%), Query Frame = 1
Query:    1 VSSTAIRRAMAGGNVELAAAMLGRPFEARGPVVHGDQRGRLLGFPTANVEVPNAMCLPADGVYAGWYLRPDGDRHPCAINLGRRPTFYEHADHSLLEAHLLDFDGDLYAEEAQVQFTNFLRSERKFEGIDSLIAQLKQDIEHARSAL 441
            VSST IRRA+AGGNV LAA +LGRP+EARG VV GDQRGRLLGFPTANVEVPN +CLPADGVYAGWY RPDG  HPCAINLGRRPTFYEHAD SLLEAHL+DFDGDLY E A+V+F +FLRSERKF+G+D+LI QLK D+EHAR  L
Sbjct:  171 VSSTTIRRALAGGNVALAAELLGRPYEARGSVVRGDQRGRLLGFPTANVEVPNQVCLPADGVYAGWYERPDGISHPCAINLGRRPTFYEHADSSLLEAHLIDFDGDLYDEPAKVRFGHFLRSERKFDGVDALIDQLKLDVEHARGVL 317          
BLAST of mRNA_P-wetherbeei_contig58015.1.1 vs. uniprot
Match: A0A6I2YXM1_9ACTN (Riboflavin biosynthesis protein n=4 Tax=root TaxID=1 RepID=A0A6I2YXM1_9ACTN)

HSP 1 Score: 243 bits (621), Expect = 3.630e-78
Identity = 118/147 (80.27%), Postives = 130/147 (88.44%), Query Frame = 1
Query:    1 VSSTAIRRAMAGGNVELAAAMLGRPFEARGPVVHGDQRGRLLGFPTANVEVPNAMCLPADGVYAGWYLRPDGDRHPCAINLGRRPTFYEHADHSLLEAHLLDFDGDLYAEEAQVQFTNFLRSERKFEGIDSLIAQLKQDIEHARSAL 441
            VSSTAIRRA+AGGNVE AA MLGRPFEARGPVV GDQRGRL+GFPTANVEVP  +CLPADGVYAGWY+R +G++HPCA+NLGRRPTFYEHAD SLLEAHL+ F GDLY E A VQFTNFLR ERKF+GIDS+  QLKQD+EHAR  L
Sbjct:  181 VSSTAIRRALAGGNVETAAHMLGRPFEARGPVVQGDQRGRLIGFPTANVEVPVQICLPADGVYAGWYIRANGEKHPCAMNLGRRPTFYEHADVSLLEAHLIAFAGDLYGEPACVQFTNFLRGERKFDGIDSIRTQLKQDVEHARQVL 327          
BLAST of mRNA_P-wetherbeei_contig58015.1.1 vs. uniprot
Match: A0A7W1UVR6_9ACTN (Riboflavin biosynthesis protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1UVR6_9ACTN)

HSP 1 Score: 240 bits (613), Expect = 3.520e-77
Identity = 117/147 (79.59%), Postives = 129/147 (87.76%), Query Frame = 1
Query:    1 VSSTAIRRAMAGGNVELAAAMLGRPFEARGPVVHGDQRGRLLGFPTANVEVPNAMCLPADGVYAGWYLRPDGDRHPCAINLGRRPTFYEHADHSLLEAHLLDFDGDLYAEEAQVQFTNFLRSERKFEGIDSLIAQLKQDIEHARSAL 441
            VSSTAIRRA+AGG+V+LA  MLGRPFEARG VV GD RGRL+GFPTANVEVP +MCLPADGVYAGWY RP G  HPCAINLGRRPTFYEHADHSLLEAHLL+FD DLY E A+V+F+ FLRSERKF+GID+L AQLKQD+E AR  L
Sbjct:  166 VSSTAIRRALAGGDVDLAERMLGRPFEARGIVVEGDHRGRLIGFPTANVEVPKSMCLPADGVYAGWYQRPTGATHPCAINLGRRPTFYEHADHSLLEAHLLEFDDDLYGEPARVRFSQFLRSERKFDGIDALSAQLKQDVERARQLL 312          
BLAST of mRNA_P-wetherbeei_contig58015.1.1 vs. uniprot
Match: A0A6I3WWY1_9ACTN (Riboflavin biosynthesis protein n=2 Tax=root TaxID=1 RepID=A0A6I3WWY1_9ACTN)

HSP 1 Score: 237 bits (604), Expect = 9.180e-76
Identity = 113/147 (76.87%), Postives = 130/147 (88.44%), Query Frame = 1
Query:    1 VSSTAIRRAMAGGNVELAAAMLGRPFEARGPVVHGDQRGRLLGFPTANVEVPNAMCLPADGVYAGWYLRPDGDRHPCAINLGRRPTFYEHADHSLLEAHLLDFDGDLYAEEAQVQFTNFLRSERKFEGIDSLIAQLKQDIEHARSAL 441
            +SSTAIRRA+AGG VE+A  MLG  +E RG VV GDQRGR LGFPTANVEV N +C+PADGVYAGWY RP+GD HPCAINLGRRPTFYEHADHSLLEAHLLDF+GDLY E A+V+FT+FLRSERKF+GID+L+ QLK DIEHAR+++
Sbjct:  166 ISSTAIRRALAGGLVEMAGEMLGHAYEVRGSVVKGDQRGRQLGFPTANVEVSNQICMPADGVYAGWYERPNGDVHPCAINLGRRPTFYEHADHSLLEAHLLDFNGDLYGETARVRFTHFLRSERKFDGIDALVFQLKHDIEHARASI 312          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58015.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K1B565_9ACTN5.380e-8988.51Riboflavin biosynthesis protein n=2 Tax=root TaxID... [more]
A0A3C2AZT9_9ACTN5.470e-8485.14Riboflavin biosynthesis protein n=1 Tax=Acidimicro... [more]
A0A7X9KN31_9ACTN8.360e-8181.63Riboflavin biosynthesis protein n=3 Tax=Actinobact... [more]
A0A4V3EJ40_9ACTN4.790e-8079.73Riboflavin biosynthesis protein n=1 Tax=Ilumatobac... [more]
A0A848UJI5_9ACTN1.360e-7980.27Riboflavin biosynthesis protein n=1 Tax=Ilumatobac... [more]
A0A6I3C804_9ACTN2.070e-7880.27Riboflavin biosynthesis protein n=2 Tax=root TaxID... [more]
A0A6N2DF25_9ACTN2.600e-7880.27Riboflavin biosynthesis protein n=1 Tax=Ilumatobac... [more]
A0A6I2YXM1_9ACTN3.630e-7880.27Riboflavin biosynthesis protein n=4 Tax=root TaxID... [more]
A0A7W1UVR6_9ACTN3.520e-7779.59Riboflavin biosynthesis protein n=1 Tax=Acidimicro... [more]
A0A6I3WWY1_9ACTN9.180e-7676.87Riboflavin biosynthesis protein n=2 Tax=root TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58015contigP-wetherbeei_contig58015:61..507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1313172.YM304_16060
Preferred nameribF
PFAMsFAD_syn,Flavokinase
Model size447
Max annot lvl84992|Acidimicrobiia
KEGG rclassRC00002,RC00017
KEGG koko:K11753
KEGG ReactionR00161,R00549
KEGG Pathwayko00740,ko01100,ko01110,map00740,map01100,map01110
KEGG ModuleM00125
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.92e-67
EggNOG OGsCOG0196@1|root,COG0196@2|Bacteria,2GKQF@201174|Actinobacteria,4CN39@84992|Acidimicrobiia
EC2.7.1.26,2.7.7.2
DescriptionRiboflavin kinase
Cds size420
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186860.0686364-CDS-P-wetherbeei_contig58015:60..4801683186860.0686364-CDS-P-wetherbeei_contig58015:60..480Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58015 61..480 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186860.082333-UTR-P-wetherbeei_contig58015:480..5071683186860.082333-UTR-P-wetherbeei_contig58015:480..507Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig58015 481..507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58015.1.1prot_P-wetherbeei_contig58015.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58015 61..480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58015.1.1

>prot_P-wetherbeei_contig58015.1.1 ID=prot_P-wetherbeei_contig58015.1.1|Name=mRNA_P-wetherbeei_contig58015.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=140bp
MAGGNVELAAAMLGRPFEARGPVVHGDQRGRLLGFPTANVEVPNAMCLPA
DGVYAGWYLRPDGDRHPCAINLGRRPTFYEHADHSLLEAHLLDFDGDLYA
EEAQVQFTNFLRSERKFEGIDSLIAQLKQDIEHARSALG*
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mRNA from alignment at P-wetherbeei_contig58015:61..507-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58015.1.1 ID=mRNA_P-wetherbeei_contig58015.1.1|Name=mRNA_P-wetherbeei_contig58015.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig58015:61..507- (Phaeothamnion wetherbeei SAG_119_79)
GTCAGCTCGACAGCGATCCGACGGGCGATGGCCGGCGGCAACGTCGAGCT CGCGGCGGCCATGCTCGGTCGTCCGTTCGAGGCTCGCGGTCCGGTGGTGC ACGGCGATCAACGTGGGCGGCTGCTCGGGTTCCCGACCGCCAACGTCGAG GTGCCGAACGCGATGTGCCTGCCCGCCGATGGCGTGTACGCCGGCTGGTA CCTGCGACCCGACGGCGATCGCCACCCGTGTGCCATCAACCTCGGTCGTC GGCCGACGTTCTACGAGCACGCCGATCACTCGTTGCTGGAGGCGCACCTG CTCGATTTCGACGGCGACCTCTATGCGGAGGAGGCGCAGGTGCAGTTCAC GAACTTCCTGCGCAGCGAGCGCAAGTTCGAAGGCATCGATTCGTTGATCG CCCAGCTGAAGCAGGACATCGAGCACGCCCGCAGCGCACTCGGCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58015:61..507-

>mRNA_P-wetherbeei_contig58015.1.1 ID=mRNA_P-wetherbeei_contig58015.1.1|Name=mRNA_P-wetherbeei_contig58015.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig58015:61..507- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGGCGGCAACGTCGAGCTCGCGGCGGCCATGCTCGGTCGTCCGTT
CGAGGCTCGCGGTCCGGTGGTGCACGGCGATCAACGTGGGCGGCTGCTCG
GGTTCCCGACCGCCAACGTCGAGGTGCCGAACGCGATGTGCCTGCCCGCC
GATGGCGTGTACGCCGGCTGGTACCTGCGACCCGACGGCGATCGCCACCC
GTGTGCCATCAACCTCGGTCGTCGGCCGACGTTCTACGAGCACGCCGATC
ACTCGTTGCTGGAGGCGCACCTGCTCGATTTCGACGGCGACCTCTATGCG
GAGGAGGCGCAGGTGCAGTTCACGAACTTCCTGCGCAGCGAGCGCAAGTT
CGAAGGCATCGATTCGTTGATCGCCCAGCTGAAGCAGGACATCGAGCACG
CCCGCAGCGCACTCGGCTAG
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