mRNA_P-wetherbeei_contig58005.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58005.1.1
Unique NamemRNA_P-wetherbeei_contig58005.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58005.1.1 vs. uniprot
Match: UPI001C3D379A (COX15/CtaA family protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3D379A)

HSP 1 Score: 250 bits (638), Expect = 2.510e-80
Identity = 132/169 (78.11%), Postives = 143/169 (84.62%), Query Frame = 1
Query:    1 PLGAVTVLSGLHPLAVGSHFLLSMVALMCGTLLAIGALDWRAGRERGWEARRGVLAGAVALSAAVVXSTGVVVTAAGPHSGDDDVTTRFGDLLLAVEVHVRAAIALVVLAGVLVAWVAREGGVDRLTARLTAIALPLVGLQIGIGEYQYRHGLPWQVVVVHVSTAGLLW 507
            PLGAVTVLSGLHPLAVGSHFL+S+ AL CGTLLA+GA D R G  R W  RRGVLA    LSAAVV  TGV+VTAAGPHSGDDDVT RFGDLLLA++VHVRAAI   VLA VL+AWVAREGGVDRLTARL A+ALPLV LQI +GEYQYR+GLPWQVVVVHVS A L+W
Sbjct:  112 PLGAVTVLSGLHPLAVGSHFLVSIAALGCGTLLALGARDHRDGVTREWSPRRGVLAVLTTLSAAVVVVTGVIVTAAGPHSGDDDVTKRFGDLLLALQVHVRAAIVFTVLAAVLIAWVAREGGVDRLTARLAALALPLVALQIAVGEYQYRNGLPWQVVVVHVSIAALVW 280          
BLAST of mRNA_P-wetherbeei_contig58005.1.1 vs. uniprot
Match: UPI001C3D4410 (COX15/CtaA family protein n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3D4410)

HSP 1 Score: 226 bits (575), Expect = 7.980e-71
Identity = 118/169 (69.82%), Postives = 135/169 (79.88%), Query Frame = 1
Query:    1 PLGAVTVLSGLHPLAVGSHFLLSMVALMCGTLLAIGALDWRAGRERGWEARRGVLAGAVALSAAVVXSTGVVVTAAGPHSGDDDVTTRFGDLLLAVEVHVRAAIALVVLAGVLVAWVAREGGVDRLTARLTAIALPLVGLQIGIGEYQYRHGLPWQVVVVHVSTAGLLW 507
            PLGA+TV SGLHP+AVG+HFLLSMVAL   TLLAI A D R GR R WE RRGV+A  VA +A  V  TGVVVTAAGPHSGDDDVT RFGDL++A +VHV+AA     LA VLVAW+ REGGVDRLT R    A+PLV LQIG+GEYQYR+GLPW+VVV+HV+ AGL+W
Sbjct:  111 PLGAITVASGLHPMAVGAHFLLSMVALALATLLAIRARDHRDGRARRWEPRRGVMAAFVAAAALTVLVTGVVVTAAGPHSGDDDVTERFGDLVVAADVHVKAAFGFTALALVLVAWLWREGGVDRLTRRAAVAAVPLVALQIGLGEYQYRNGLPWEVVVLHVTNAGLVW 279          
BLAST of mRNA_P-wetherbeei_contig58005.1.1 vs. uniprot
Match: A0A7W0G8R9_9ACTN (COX15/CtaA family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W0G8R9_9ACTN)

HSP 1 Score: 112 bits (279), Expect = 7.820e-27
Identity = 75/171 (43.86%), Postives = 100/171 (58.48%), Query Frame = 1
Query:    1 PLGAVTVLSGLHPLAVGSHFLLSMVALMCGTLLAIGALDWRAGRERGWEARRGVLAGAVALSAA--VVXSTGVVVTAAGPHSGDDDVTTRFGDLLLAVEVHVRAAIALVVLAGVLVAWVAREGGVDRLTARLTAIALPLVGLQIGIGEYQYRHGLPWQVVVVHVSTAGLLW 507
            PLG +T+   LHPL VG+HFLL++V L     LA+ A     GR +   A R + A A+ L  A  ++  TG + TAAGPH GD     RF +LL AV  HVRA  A  +   +LVAW+ RE G      R T + L L+ LQ+G+GE Q+R+ LPW +V+VHV  A  +W
Sbjct:  116 PLGLLTIRLDLHPLMVGTHFLLALVVLAGAVALAVEAWGNARGRVQS-PAPRWLRAVALVLVVACGILVVTGTLSTAAGPHPGDSAEIDRFWNLLDAVWWHVRATAAFGLSFLILVAWLVRERGRVPGLVRATGVLLALLLLQMGVGEIQFRNQLPWWLVLVHVGLAAAVW 285          
BLAST of mRNA_P-wetherbeei_contig58005.1.1 vs. uniprot
Match: A0A7V9L0W5_9ACTN (COX15/CtaA family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9L0W5_9ACTN)

HSP 1 Score: 107 bits (267), Expect = 5.630e-25
Identity = 73/170 (42.94%), Postives = 105/170 (61.76%), Query Frame = 1
Query:    1 PLGAVTVLSGLHPLAVGSHFLLSMVALMCGTLLAIGALDWRAGRER-GWEARRGVLAGAVALSAAVVXSTGVVVTAAGPHSGDDDVTTRFGDLLLAVEVHVRAAIALVVLAGVLVAWVAREGGVDRLTARLTAIALPLVGLQIGIGEYQYRHGLPWQVVVVHVSTAGLLW 507
            PLG +TV+  LHP+AV +HFLL++ A+    ++A+GA ++  GR R G     G LA  +   A V+  TG +VTAAGPHSG  D+  R G+++ AV +HVRA     V   VLVA V R G    L + +  + L L+ LQ+ +GE Q+R+ LPW +V+VHV+ A  +W
Sbjct:  122 PLGGLTVILELHPVAVMAHFLLALAAVALAVVVALGADEFARGRRRAGVSPWVGRLALGLVPVALVLVVTGALVTAAGPHSGGADIE-RLGNIVDAVYIHVRATAVFGVGFLVLVALVFRSGA--PLESVIAGVVLALLVLQMVVGEVQWRNQLPWWLVLVHVALAVSVW 288          
BLAST of mRNA_P-wetherbeei_contig58005.1.1 vs. uniprot
Match: A0A7V8YV66_9ACTN (COX15/CtaA family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V8YV66_9ACTN)

HSP 1 Score: 107 bits (266), Expect = 6.290e-25
Identity = 76/175 (43.43%), Postives = 98/175 (56.00%), Query Frame = 1
Query:    1 PLGAVTVLSGLHPLAVGSHFLLSMVALMCGTLLAIGALDWRAGRER------GWEARRGVLAGAVALSAAVVXSTGVVVTAAGPHSGDDDVTTRFGDLLLAVEVHVRAAIALVVLAGVLVAWVAREGGVDRLTARLTAIALPLVGLQIGIGEYQYRHGLPWQVVVVHVSTAGLLW 507
            PLG +T+   LHPL VG+HFLL++V L    +LAI A  W   R R       W   RGV A  + +S  V+  TG + TAAGPH GD     RF +LL AV  HVRA  A  +   VL AW+ RE  +     RL    L L+ LQ+ +GE Q+R+ LPW +V+VHV  A  +W
Sbjct:  116 PLGLLTIRLDLHPLMVGTHFLLALVVLAGAVVLAIEA--WANARGRVDSPLPSW--LRGV-ALVLVVSCGVLVVTGTLSTAAGPHPGDSAEIDRFWNLLDAVWWHVRATAAFGLSFLVLAAWLVRERRLVPGLIRLAGGLLALLALQMAVGEIQFRNQLPWWLVLVHVGLAAAVW 285          
BLAST of mRNA_P-wetherbeei_contig58005.1.1 vs. uniprot
Match: A0A7W1LG62_9ACTN (COX15/CtaA family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W1LG62_9ACTN)

HSP 1 Score: 104 bits (259), Expect = 6.860e-24
Identity = 72/173 (41.62%), Postives = 95/173 (54.91%), Query Frame = 1
Query:    1 PLGAVTVLSGLHPLAVGSHFLLSMVALMCGTLLAIGALDWRAGRERG----WEARRGVLAGAVALSAAVVXSTGVVVTAAGPHSGDDDVTTRFGDLLLAVEVHVRAAIALVVLAGVLVAWVAREGGVDRLTARLTAIALPLVGLQIGIGEYQYRHGLPWQVVVVHVSTAGLLW 507
            PLG +T+   LHPL VG+HFLL++V L     LA+ A     GR       W      +A  + ++  ++  TG + TAAGPH GD     RF +LL AV  HVRA     +   +L AWV RE        R TA+ L L+ LQ+GIGE QYR+ LPW +V+VHV  A  +W
Sbjct:  118 PLGLLTIRLDLHPLMVGTHFLLALVVLAGAVALAMEAWGNAHGRVDSPVPPWLR---AVALVLVIACGILVVTGTLSTAAGPHPGDSAEIDRFWNLLDAVWWHVRATAVFGLSFLILAAWVVRERRRVPGLGRGTAVLLGLLLLQMGIGEIQYRNQLPWWLVLVHVGLAAAVW 287          
BLAST of mRNA_P-wetherbeei_contig58005.1.1 vs. uniprot
Match: A0A7Y5X0V8_9ACTN (Heme A synthase n=1 Tax=Thermoleophilia bacterium TaxID=2026888 RepID=A0A7Y5X0V8_9ACTN)

HSP 1 Score: 103 bits (257), Expect = 9.800e-24
Identity = 72/169 (42.60%), Postives = 93/169 (55.03%), Query Frame = 1
Query:    1 PLGAVTVLSGLHPLAVGSHFLLSMVALMCGTLLAIGALDWRAGRERGWEARRGVLAGAVALSAAVVXSTGVVVTAAGPHSGDDDVTTRFGDLLLAVEVHVRAAIALVVLAGVLVAWVAREGGVDRLTARLTAIALPLVGLQIGIGEYQYRHGLPWQVVVVHVSTAGLLW 507
            PLGA+TV  GL+P  V SHFLLS+V L  G +LA+        R   W  R G+L   VA + AV+  +G + TAAGPH G   V  R      AV  HVRA     +   VL+ W+ R G       R   + L L+G+Q+ IGE QYR  LPW +V+VHV+TA  +W
Sbjct:  112 PLGALTVHFGLNPWLVLSHFLLSVVVLTLGVVLALEVRGRERTRLPAWVPRLGLL---VAAAGAVLVVSGTLATAAGPHPGST-VVRRLWSFEPAVYWHVRATAVFGIAFLVLLVWLVRHGAPQ---VRGALVLLGLLGVQMAIGETQYRTHLPWWLVLVHVATAVTVW 273          
BLAST of mRNA_P-wetherbeei_contig58005.1.1 vs. uniprot
Match: A0A7V8XNW0_9ACTN (COX15/CtaA family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V8XNW0_9ACTN)

HSP 1 Score: 100 bits (248), Expect = 2.650e-22
Identity = 68/173 (39.31%), Postives = 93/173 (53.76%), Query Frame = 1
Query:    1 PLGAVTVLSGLHPLAVGSHFLLSMVALMCGTLLAIGALDWRAGRERG----WEARRGVLAGAVALSAAVVXSTGVVVTAAGPHSGDDDVTTRFGDLLLAVEVHVRAAIALVVLAGVLVAWVAREGGVDRLTARLTAIALPLVGLQIGIGEYQYRHGLPWQVVVVHVSTAGLLW 507
            PLG +T+   LHPL VG+HFLL+++ L     LA+ A     GR       W  +  VL   + ++  V+  TG + TAAGPH GD     RF  LL AV  HVRA     +   +L+AW+ RE        R     L L+ LQ+G+GE Q+R+ LPW +V+VHV  A  +W
Sbjct:  116 PLGLLTIRLDLHPLMVGTHFLLALLVLAGAVALAVEAWGNARGRVESPAPPWLRKVAVL---LVVACGVLVVTGTLSTAAGPHPGDSAEIDRFWHLLDAVWWHVRATAVFGLSFLLLIAWLVRERRRAPGLVRAMLGLLALLVLQMGVGEIQFRNQLPWWLVLVHVGLAAAVW 285          
BLAST of mRNA_P-wetherbeei_contig58005.1.1 vs. uniprot
Match: A0A7M2Z0D8_9ACTN (Cytochrome oxidase assembly protein n=1 Tax=Gaiella occulta TaxID=1002870 RepID=A0A7M2Z0D8_9ACTN)

HSP 1 Score: 95.5 bits (236), Expect = 1.940e-20
Identity = 73/178 (41.01%), Postives = 94/178 (52.81%), Query Frame = 1
Query:    1 PLGAVTVLSGLHPLAVGSHFLLSMVALMCGTLLAIGALDWRAGRER----GWEARRGVLAGAVALSAAVVXSTGVVVTAAGPHSGDDDVTTRFGDLLLAVEVHVRAAIAL---VVLAGVLVAWVAREG--GVDRLTARLTAIALPLVGLQIGIGEYQYRHGLPWQVVVVHVSTAGLLW 507
            PLG VTVL  LHPLAV SHFLL+++ L    ++A+ A     G       GW  RR  L G  A +  VV  TG V TA+GPHSG  D+      +   V VHVRA       V++ GV + W  R    G+ RL   L  + +    +Q  +GE QYR  LPW +VV+HVS A  +W
Sbjct:  133 PLGGVTVLLELHPLAVMSHFLLALLVLAGAIVVALEAWAGPVGPAPPVGPGW-LRRAALVGVAACAVLVV--TGAVATASGPHSGGRDIRRLGLGISDTVYVHVRATAVFGIGVLVVGVFL-WRLRHNYPGIARLALGLVGVLV----VQAAVGEIQYRSALPWWLVVIHVSLAATIW 302          
BLAST of mRNA_P-wetherbeei_contig58005.1.1 vs. uniprot
Match: A0A7V9BDD2_9ACTN (COX15/CtaA family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9BDD2_9ACTN)

HSP 1 Score: 91.7 bits (226), Expect = 4.890e-19
Identity = 68/177 (38.42%), Postives = 98/177 (55.37%), Query Frame = 1
Query:    1 PLGAVTVLSGLHPLAVGSHFLLSMVALMCGTLLAIGALDWRAGRERG------WEARRGVLAGAVALSAAVVXSTGVVVTAAGPHSGDDDVTTRFG-DLLLAVEVHVRAAIALVVLAGVLVAW-VAREGGVDRLTARLTAIALPLVGLQIGIGEYQYRHGLPWQVVVVHVSTAGLLW 507
            PLG +TV+  LHPLAV +HFLL++V +    ++A+ A  W   R  G      W  R   + G VA  A VV  TG + TA+GPH G D+   R G ++   V VHVRA  A+  +  +LV W + R         RL  + L ++  Q+ +GE QYR+ LPW +V++HV+ A  +W
Sbjct:  114 PLGGLTVILDLHPLAVMTHFLLALVVVALSVVVALEA--WSHARGLGEPVAPRW-LRLVAVVGVVACGAMVV--TGAIATASGPHPGADEDVARLGLEISDTVYVHVRAT-AVFGIGFLLVGWQLLRVRRAVPGVLRLAGVLLAVLVAQMLVGEIQYRNALPWGLVLIHVTLAAAIW 284          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58005.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3D379A2.510e-8078.11COX15/CtaA family protein n=1 Tax=Miltoncostaea oc... [more]
UPI001C3D44107.980e-7169.82COX15/CtaA family protein n=1 Tax=Miltoncostaea ma... [more]
A0A7W0G8R9_9ACTN7.820e-2743.86COX15/CtaA family protein n=1 Tax=Actinomycetia ba... [more]
A0A7V9L0W5_9ACTN5.630e-2542.94COX15/CtaA family protein n=1 Tax=Actinomycetia ba... [more]
A0A7V8YV66_9ACTN6.290e-2543.43COX15/CtaA family protein n=1 Tax=Actinomycetia ba... [more]
A0A7W1LG62_9ACTN6.860e-2441.62COX15/CtaA family protein n=1 Tax=Actinomycetia ba... [more]
A0A7Y5X0V8_9ACTN9.800e-2442.60Heme A synthase n=1 Tax=Thermoleophilia bacterium ... [more]
A0A7V8XNW0_9ACTN2.650e-2239.31COX15/CtaA family protein n=1 Tax=Actinomycetia ba... [more]
A0A7M2Z0D8_9ACTN1.940e-2041.01Cytochrome oxidase assembly protein n=1 Tax=Gaiell... [more]
A0A7V9BDD2_9ACTN4.890e-1938.42COX15/CtaA family protein n=1 Tax=Actinomycetia ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58005contigP-wetherbeei_contig58005:1..507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog298655.KI912267_gene7019
Preferred namectaA
PFAMsCOX15-CtaA
Model size507
Max annot lvl201174|Actinobacteria
KEGG rclassRC00769
KEGG koko:K02259
KEGG TC3.D.4.4
KEGG ReactionR07412
KEGG Pathwayko00190,ko00860,ko01100,ko01110,ko02020,ko04714,map00190,map00860,map01100,map01110,map02020,map04714
KEGG ModuleM00154
Hectar predicted targeting categorysignal anchor
Exons1
Evalue4.72e-16
EggNOG OGsCOG1612@1|root,COG1612@2|Bacteria,2GJQX@201174|Actinobacteria,4ESN0@85013|Frankiales
Descriptioncytochrome oxidase assembly
Cds size507
COG categoryO
BRITEko00000,ko00001,ko00002,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186859.9183183-CDS-P-wetherbeei_contig58005:0..5071683186859.9183183-CDS-P-wetherbeei_contig58005:0..507Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58005 1..507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58005.1.1prot_P-wetherbeei_contig58005.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58005 1..507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58005.1.1

>prot_P-wetherbeei_contig58005.1.1 ID=prot_P-wetherbeei_contig58005.1.1|Name=mRNA_P-wetherbeei_contig58005.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
PLGAVTVLSGLHPLAVGSHFLLSMVALMCGTLLAIGALDWRAGRERGWEA
RRGVLAGAVALSAAVVLSTGVVVTAAGPHSGDDDVTTRFGDLLLAVEVHV
RAAIALVVLAGVLVAWVAREGGVDRLTARLTAIALPLVGLQIGIGEYQYR
HGLPWQVVVVHVSTAGLLW
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mRNA from alignment at P-wetherbeei_contig58005:1..507+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58005.1.1 ID=mRNA_P-wetherbeei_contig58005.1.1|Name=mRNA_P-wetherbeei_contig58005.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig58005:1..507+ (Phaeothamnion wetherbeei SAG_119_79)
CCCCTCGGGGCGGTCACCGTGCTGTCGGGCCTGCACCCCCTCGCGGTGGG CTCGCACTTCCTGCTGTCGATGGTCGCCCTCATGTGCGGCACGCTGCTGG CCATCGGAGCGCTCGACTGGCGCGCGGGGAGGGAGCGCGGATGGGAGGCG CGGCGCGGCGTCCTGGCCGGCGCGGTGGCGCTCAGCGCCGCGGTGGTGCT CAGCACCGGCGTCGTGGTGACGGCCGCCGGGCCGCACTCGGGCGACGACG ACGTCACGACGCGCTTCGGTGACCTGCTGCTGGCCGTCGAGGTGCACGTG CGCGCGGCGATCGCCCTCGTGGTGCTCGCCGGCGTGCTCGTGGCCTGGGT GGCCCGGGAGGGCGGCGTGGATCGGCTCACCGCACGCCTCACGGCCATCG CCCTGCCGCTGGTGGGCCTCCAGATCGGGATCGGCGAGTACCAGTACCGG CACGGCCTGCCCTGGCAGGTGGTGGTGGTGCACGTCTCCACGGCCGGGCT CCTGTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58005:1..507+

>mRNA_P-wetherbeei_contig58005.1.1 ID=mRNA_P-wetherbeei_contig58005.1.1|Name=mRNA_P-wetherbeei_contig58005.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig58005:1..507+ (Phaeothamnion wetherbeei SAG_119_79)
CCCCTCGGGGCGGTCACCGTGCTGTCGGGCCTGCACCCCCTCGCGGTGGG
CTCGCACTTCCTGCTGTCGATGGTCGCCCTCATGTGCGGCACGCTGCTGG
CCATCGGAGCGCTCGACTGGCGCGCGGGGAGGGAGCGCGGATGGGAGGCG
CGGCGCGGCGTCCTGGCCGGCGCGGTGGCGCTCAGCGCCGCGGTGGTGCT
CAGCACCGGCGTCGTGGTGACGGCCGCCGGGCCGCACTCGGGCGACGACG
ACGTCACGACGCGCTTCGGTGACCTGCTGCTGGCCGTCGAGGTGCACGTG
CGCGCGGCGATCGCCCTCGTGGTGCTCGCCGGCGTGCTCGTGGCCTGGGT
GGCCCGGGAGGGCGGCGTGGATCGGCTCACCGCACGCCTCACGGCCATCG
CCCTGCCGCTGGTGGGCCTCCAGATCGGGATCGGCGAGTACCAGTACCGG
CACGGCCTGCCCTGGCAGGTGGTGGTGGTGCACGTCTCCACGGCCGGGCT
CCTGTGG
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