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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 2873 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Cds size | 1962 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186859.6284842-UTR-P-wetherbeei_contig580:2652..3316 | 1683186859.6284842-UTR-P-wetherbeei_contig580:2652..3316 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig580 2653..3316 - |
| 1683186859.6444256-UTR-P-wetherbeei_contig580:5278..5437 | 1683186859.6444256-UTR-P-wetherbeei_contig580:5278..5437 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig580 5279..5437 - |
| 1683186859.652146-UTR-P-wetherbeei_contig580:5526..5614 | 1683186859.652146-UTR-P-wetherbeei_contig580:5526..5614 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig580 5527..5614 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186859.6367118-CDS-P-wetherbeei_contig580:3316..5278 | 1683186859.6367118-CDS-P-wetherbeei_contig580:3316..5278 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig580 3317..5278 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig580.2.1 >prot_P-wetherbeei_contig580.2.1 ID=prot_P-wetherbeei_contig580.2.1|Name=mRNA_P-wetherbeei_contig580.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=654bp
MPKPKRGAADGAERRDRNSGGGGGGVAAALGAWDADAGGCSAVDAWTLVG
ADGGPDEFAVMPSVLCFFMKSVKPFSLPVQQKPPRQKAMATMGAVAAAAA
AAAIAAAGRQNPEAHPVSPRGETLAAAVDFDGAASGGGGGGGADGGSGVS
GDSDGGGGRRRDGRDDRGFPAAMSGALPLLREGFDGPLGRAPSFCTPERD
RPRRSGDEEEGGGSGGGLAVANPPRGSWAGFVGGGRCTGAGVGRSKTLPT
SPAVSGEKERRADDDDGKKRYRWSQEETAAARKAAGTGDAGGSIEAGGAA
CGVMLTFDSLERLSAAYQLQRPRLFAVGRPRPDAGVMLEPKALRLPCDDD
GLGGAAVAGSGGAAFAGDGGAARGGRGNNDCGGGDGSGGCGLSWLDGGSL
LSPVHDLEFMRRAQPAPRHGGSGIFYTQEAMVAGMNEGAGRELAGASGNG
GRGGENGGENGGDNDAFSVWEKEEEFGEQPPLPGCPMSMTSLPLFEPSDR
GIDASEPHRAGSVTAIEITGTHEQSAWSGAGVVANAAAAVEAASAAAAAA
AGNGGPGFQSTGTGADAAPSVAVATVTVPVKTPLEFLDLVLSLHNHNLCQ
RARSGSGGSRSSDGGGDSGGGGRELVLEVAEERHVIIRPAVGRKHPTASS
SSC* back to topmRNA from alignment at P-wetherbeei_contig580:2653..5614- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig580.2.1 ID=mRNA_P-wetherbeei_contig580.2.1|Name=mRNA_P-wetherbeei_contig580.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2962bp|location=Sequence derived from alignment at P-wetherbeei_contig580:2653..5614- (Phaeothamnion wetherbeei SAG_119_79)
CACTCTGTCGAAGGAGATTTCAGTTCGGGTCGCTCTTCTTTCCAAGCAGG
TCGACATTCTTAACAAAGTCTCGAGCACGGCGGACAAGGTAAGATTGCGT
TGCACATTCTTATAAAAGGAATCCGTCTCTATGAAGCCCTCCACTCTTGC
TTTTCCACATGCTCTCCCGTGCCGCAGCCGAAGAGTCGGCAAAATGCTCC
TGCCACCTCCGCGGTGGAAGATGAAGAGGAGGCGAGTCAACCAGTTGCAG
CACCCTACGCGGCGACGAGTGCCCGACTGGCCACATTCGAGAAGATTATC
CGTGGCAATTGCGACATCAACGACGTCTTGCCGGCGATGCCCAAGCCGAA
GCGCGGCGCGGCGGACGGTGCGGAGCGGCGGGACCGCAACAGCGGCGGTG
GCGGTGGCGGGGTTGCCGCAGCGCTCGGCGCGTGGGATGCTGACGCAGGA
GGCTGCTCGGCCGTGGACGCCTGGACCTTGGTCGGCGCGGACGGCGGCCC
CGATGAGTTTGCCGTAATGCCCTCCGTCCTCTGCTTCTTTATGAAGAGTG
TCAAGCCCTTCTCGCTGCCGGTGCAACAAAAGCCCCCCCGGCAAAAGGCT
ATGGCGACGATGGGGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGATAGC
GGCGGCGGGGCGGCAAAATCCTGAAGCACATCCGGTGTCTCCCCGTGGCG
AGACTCTGGCTGCCGCTGTGGATTTTGACGGGGCCGCTTCTGGCGGCGGT
GGCGGCGGCGGCGCTGATGGCGGCAGCGGTGTCAGCGGCGATAGTGACGG
CGGCGGAGGAAGAAGACGGGACGGCAGAGACGACCGCGGCTTCCCTGCAG
CGATGAGCGGGGCCCTTCCCCTTCTGCGAGAAGGCTTTGACGGGCCTCTA
GGCCGCGCTCCGTCGTTCTGCACACCCGAACGTGACAGACCAAGAAGAAG
CGGCGACGAAGAAGAAGGCGGCGGCAGTGGCGGCGGGCTCGCAGTGGCCA
ACCCACCGCGCGGCAGCTGGGCCGGCTTTGTTGGTGGAGGCCGCTGCACC
GGCGCCGGGGTCGGCCGAAGTAAGACCCTTCCCACGAGTCCAGCGGTAAG
CGGTGAGAAGGAGCGGCGCGCTGACGACGACGATGGCAAGAAGCGTTACC
GCTGGAGCCAGGAGGAGACGGCAGCGGCTCGGAAAGCGGCTGGCACTGGC
GACGCCGGCGGCAGCATTGAGGCCGGCGGGGCGGCGTGTGGTGTCATGCT
GACTTTCGACAGCCTGGAGCGGCTCTCCGCGGCCTACCAGCTGCAGCGTC
CGCGGCTGTTTGCAGTGGGTCGGCCGCGGCCGGATGCCGGGGTGATGCTG
GAGCCGAAGGCGCTTCGCCTGCCGTGCGACGACGACGGCCTCGGCGGGGC
GGCGGTCGCCGGCAGCGGAGGGGCGGCGTTCGCCGGCGACGGCGGAGCGG
CGCGCGGCGGCCGTGGGAACAATGACTGCGGTGGTGGCGACGGCAGCGGC
GGCTGCGGGCTCTCGTGGCTGGACGGTGGAAGCTTGCTGTCGCCCGTGCA
TGACCTCGAGTTCATGCGGAGAGCGCAGCCAGCGCCGCGTCATGGCGGCA
GCGGTATCTTTTATACGCAGGAAGCGATGGTGGCTGGCATGAACGAGGGT
GCAGGGCGGGAGCTGGCGGGTGCCAGCGGGAATGGCGGCCGCGGCGGCGA
GAACGGCGGCGAGAACGGCGGCGACAATGATGCCTTTTCTGTCTGGGAGA
AAGAGGAGGAGTTTGGGGAGCAGCCGCCTCTGCCGGGTTGTCCCATGTCC
ATGACGTCGCTGCCGCTGTTTGAGCCAAGCGACCGCGGCATTGACGCTTC
GGAACCGCATCGCGCGGGCAGCGTCACAGCTATCGAAATTACCGGCACGC
ACGAGCAGTCTGCATGGAGCGGCGCGGGGGTTGTTGCCAATGCCGCCGCG
GCGGTGGAGGCAGCATCGGCAGCGGCGGCGGCAGCAGCGGGCAACGGAGG
CCCCGGCTTCCAAAGCACCGGAACCGGCGCGGACGCTGCTCCGTCAGTCG
CTGTCGCTACGGTAACCGTCCCCGTCAAGACGCCCCTAGAGTTTCTTGAT
TTGGTGCTCTCTCTGCACAATCACAACCTCTGCCAGCGGGCGCGAAGCGG
CAGTGGTGGCAGCCGCAGCAGCGACGGCGGCGGCGACAGTGGCGGGGGCG
GTCGAGAGCTGGTCTTGGAGGTTGCCGAGGAGCGTCATGTGATCATCCGG
CCTGCCGTCGGTAGGAAGCACCCCACGGCGAGTAGCTCTTCCTGCTGACT
TGCGGCGTCGCTGCCGGTAAAGTTCTTCGTGGGGCCCGTTTTGCGGCGTC
GGCCGGGGCCAAATCCAAGGACGAATGACAGCTAGCGGCACATTCGATGC
TTCCTACAGGATGAATTTTTTGGTGTGCAGCAAGGCGAGAGGTGCTTCGC
GCACCGAAACGGCAAGCTTTCCGGCGAAATAAGGGGCATCGTCAAGAGGG
CGGCAATTTGGGGTTATGCAGGCTTGAAATGGAGCGTACATCATTTTGTC
ATGTTCTTAGACTGACTGAGATCAGAGCATTTCGATAACAGCGGCACGGC
CGCTCTTTACATAAGTGGCAAAGCATACAGGGCCGGCTCCAAAGGCACAG
CTAGCAATGAATCAAACGGGCAGGAGGAGCTAGCTGACTCGACAGAAGGC
ATCCGATGAGACGGGAGCATGCAGGGAACATGACACGGCCAACTTCTGCT
TGGCTGAAAATGGGCAGAGCCCTTGGTAACTTGGCAGTGGACCCGGCGTG
GCGGAAGATTGGTTCTGAGGAATCGGGCTCGTGCGCAACACAGCGCGTTG
AACCATTTGTGACTGATGAAAAATGAAAATAAAGACACGTTTCTTGCCGT
AAGGAGCCTTGTCTCTAAACGTGCGCAATCCTCTAACGTCTTGCATCTCT
CTACCAACTAAA back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig580:2653..5614- >mRNA_P-wetherbeei_contig580.2.1 ID=mRNA_P-wetherbeei_contig580.2.1|Name=mRNA_P-wetherbeei_contig580.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1962bp|location=Sequence derived from alignment at P-wetherbeei_contig580:2653..5614- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCAAGCCGAAGCGCGGCGCGGCGGACGGTGCGGAGCGGCGGGACCG
CAACAGCGGCGGTGGCGGTGGCGGGGTTGCCGCAGCGCTCGGCGCGTGGG
ATGCTGACGCAGGAGGCTGCTCGGCCGTGGACGCCTGGACCTTGGTCGGC
GCGGACGGCGGCCCCGATGAGTTTGCCGTAATGCCCTCCGTCCTCTGCTT
CTTTATGAAGAGTGTCAAGCCCTTCTCGCTGCCGGTGCAACAAAAGCCCC
CCCGGCAAAAGGCTATGGCGACGATGGGGGCGGTGGCGGCGGCGGCGGCG
GCGGCGGCGATAGCGGCGGCGGGGCGGCAAAATCCTGAAGCACATCCGGT
GTCTCCCCGTGGCGAGACTCTGGCTGCCGCTGTGGATTTTGACGGGGCCG
CTTCTGGCGGCGGTGGCGGCGGCGGCGCTGATGGCGGCAGCGGTGTCAGC
GGCGATAGTGACGGCGGCGGAGGAAGAAGACGGGACGGCAGAGACGACCG
CGGCTTCCCTGCAGCGATGAGCGGGGCCCTTCCCCTTCTGCGAGAAGGCT
TTGACGGGCCTCTAGGCCGCGCTCCGTCGTTCTGCACACCCGAACGTGAC
AGACCAAGAAGAAGCGGCGACGAAGAAGAAGGCGGCGGCAGTGGCGGCGG
GCTCGCAGTGGCCAACCCACCGCGCGGCAGCTGGGCCGGCTTTGTTGGTG
GAGGCCGCTGCACCGGCGCCGGGGTCGGCCGAAGTAAGACCCTTCCCACG
AGTCCAGCGGTAAGCGGTGAGAAGGAGCGGCGCGCTGACGACGACGATGG
CAAGAAGCGTTACCGCTGGAGCCAGGAGGAGACGGCAGCGGCTCGGAAAG
CGGCTGGCACTGGCGACGCCGGCGGCAGCATTGAGGCCGGCGGGGCGGCG
TGTGGTGTCATGCTGACTTTCGACAGCCTGGAGCGGCTCTCCGCGGCCTA
CCAGCTGCAGCGTCCGCGGCTGTTTGCAGTGGGTCGGCCGCGGCCGGATG
CCGGGGTGATGCTGGAGCCGAAGGCGCTTCGCCTGCCGTGCGACGACGAC
GGCCTCGGCGGGGCGGCGGTCGCCGGCAGCGGAGGGGCGGCGTTCGCCGG
CGACGGCGGAGCGGCGCGCGGCGGCCGTGGGAACAATGACTGCGGTGGTG
GCGACGGCAGCGGCGGCTGCGGGCTCTCGTGGCTGGACGGTGGAAGCTTG
CTGTCGCCCGTGCATGACCTCGAGTTCATGCGGAGAGCGCAGCCAGCGCC
GCGTCATGGCGGCAGCGGTATCTTTTATACGCAGGAAGCGATGGTGGCTG
GCATGAACGAGGGTGCAGGGCGGGAGCTGGCGGGTGCCAGCGGGAATGGC
GGCCGCGGCGGCGAGAACGGCGGCGAGAACGGCGGCGACAATGATGCCTT
TTCTGTCTGGGAGAAAGAGGAGGAGTTTGGGGAGCAGCCGCCTCTGCCGG
GTTGTCCCATGTCCATGACGTCGCTGCCGCTGTTTGAGCCAAGCGACCGC
GGCATTGACGCTTCGGAACCGCATCGCGCGGGCAGCGTCACAGCTATCGA
AATTACCGGCACGCACGAGCAGTCTGCATGGAGCGGCGCGGGGGTTGTTG
CCAATGCCGCCGCGGCGGTGGAGGCAGCATCGGCAGCGGCGGCGGCAGCA
GCGGGCAACGGAGGCCCCGGCTTCCAAAGCACCGGAACCGGCGCGGACGC
TGCTCCGTCAGTCGCTGTCGCTACGGTAACCGTCCCCGTCAAGACGCCCC
TAGAGTTTCTTGATTTGGTGCTCTCTCTGCACAATCACAACCTCTGCCAG
CGGGCGCGAAGCGGCAGTGGTGGCAGCCGCAGCAGCGACGGCGGCGGCGA
CAGTGGCGGGGGCGGTCGAGAGCTGGTCTTGGAGGTTGCCGAGGAGCGTC
ATGTGATCATCCGGCCTGCCGTCGGTAGGAAGCACCCCACGGCGAGTAGC
TCTTCCTGCTGA back to top
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