mRNA_P-wetherbeei_contig58.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58.6.1
Unique NamemRNA_P-wetherbeei_contig58.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58contigP-wetherbeei_contig58:14051..15347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size276
Hectar predicted targeting categoryother localisation
Exons2
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186859.5141106-CDS-P-wetherbeei_contig58:14050..141961683186859.5141106-CDS-P-wetherbeei_contig58:14050..14196Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58 14051..14196 +
1683186859.524578-CDS-P-wetherbeei_contig58:15217..153471683186859.524578-CDS-P-wetherbeei_contig58:15217..15347Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58 15218..15347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58.6.1prot_P-wetherbeei_contig58.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58 14051..15347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58.6.1

>prot_P-wetherbeei_contig58.6.1 ID=prot_P-wetherbeei_contig58.6.1|Name=mRNA_P-wetherbeei_contig58.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
AAPAGAAVSAAAAATPAATAAATAANGTATGAAATPAAATGTTARVALLA
SMTTMSVSTSGGSTAAADASAAAALDVAAAASASSGAAASSP
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mRNA from alignment at P-wetherbeei_contig58:14051..15347+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58.6.1 ID=mRNA_P-wetherbeei_contig58.6.1|Name=mRNA_P-wetherbeei_contig58.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1297bp|location=Sequence derived from alignment at P-wetherbeei_contig58:14051..15347+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCCCCGCCGGTGCCGCCGTTTCCGCCGCTGCCGCCGCCACCCCTGC
CGCCACCGCCGCCGCCACCGCCGCCAATGGCACCGCCACCGGTGCCGCCG
CCACCCCCGCCGCTGCCACCGGCACCACCGCGCGCGTCGCGCTTCTGTTG
GGCGGCGTGCATCATGAGCGCGGCGATCTTGCGCTGCCAGTCGGCGTTTT
CGGTGAGGAGTTGTCCCTTCTCCCTACTGGCTTCCACCACGCGTTGCCGC
AGCGCCGACGCCGCCACCTGGTGCTGCTGCGCCGCCTCCTCCTCCTCTTG
CCGGCGCTCCCAGGCGGCGCCGCGCGCCTGCCGCTGCTCCTCCCACTCCT
TCACTTCGCCGCGGCTCATGGTCGAATCCAGGCGGTATGCCGCATCGCCT
CCTGCGCCGCACTCATCGCCGTCGCCGCCGCCACCTTCGCCGTCGCCACC
GCCGCCGTCGTGGCGGCCATCGTCAAAGCATCCGCCGGAGCTGCCGCCGC
CATGGCTGCCGCCTCTGCTGGCCGAACCCGACGGGCCGGAAGAAAGCTGC
GGCGCCGCCAGCCCCATAGACTGGAGCGTCTCGTGCACCTGCGCCGCCGT
CTCCGCCGCTGTCCGTTCCGCTATCTCTTCGATGACGGCGGCGCTGGCGT
CAGCACGCTTCGTGCAGAGGAAGATGTCGCCGCCGAATGCCGCCCCGACA
GCTGCCGGCAGCAGGAGGGTCCGCCAGCCGGACCCCATCTCAAAACCCGA
GTTCCCGTACACGACGGCGAGGTCCACGAGCGGAGACGCATCCGTCTGGC
CCAGTGGAGCGCGCCGCACGCACAAGAAAACGCGATGCCGCTGGGATGCC
GCAGACGTTGCGGATTCTGACCCTCCTGATTTCTTCGCCTTGTCTGCACC
ACCGCTAGCTTCGCCGGCTTCTTCCCCTGCATCGTTGCCACTGCCACTGC
TTTCACCGCTCTTGCCGCCGCTGCCGCCGCCTCCGCTGCCGGCGCCGCCG
CCGTCACCGCTGTCAGCGTCGGCTTCCTCGTCTTCACCGTCTTCGTCAGC
CACTCCCCAGGGGTCCGTCCTTCCCGCGGCGCCGCCGCCGCGGGACGCTT
CGGCAACAACCAGGTCGCCGGACAGCAGCTCGTAGCCGTCGGGAACAGCC
GGCTCCTCGCCCGGCAGCGCTTCGATGACAACAATGTCCGTCAGCACTAG
CGGCGGCTCCACGGCAGCCGCCGACGCATCGGCGGCGGCAGCACTAGACG
TGGCGGCCGCGGCTTCGGCGTCTTCTGGCGCAGCGGCGTCGTCCCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58:14051..15347+

>mRNA_P-wetherbeei_contig58.6.1 ID=mRNA_P-wetherbeei_contig58.6.1|Name=mRNA_P-wetherbeei_contig58.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig58:14051..15347+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCCCCGCCGGTGCCGCCGTTTCCGCCGCTGCCGCCGCCACCCCTGC
CGCCACCGCCGCCGCCACCGCCGCCAATGGCACCGCCACCGGTGCCGCCG
CCACCCCCGCCGCTGCCACCGGCACCACCGCGCGCGTCGCGCTTCTCGCT
TCGATGACAACAATGTCCGTCAGCACTAGCGGCGGCTCCACGGCAGCCGC
CGACGCATCGGCGGCGGCAGCACTAGACGTGGCGGCCGCGGCTTCGGCGT
CTTCTGGCGCAGCGGCGTCGTCCCCA
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