mRNA_P-wetherbeei_contig57896.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57896.1.1
Unique NamemRNA_P-wetherbeei_contig57896.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57896.1.1 vs. uniprot
Match: UPI0019B39770 (Cytochrome c n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI0019B39770)

HSP 1 Score: 79.7 bits (195), Expect = 7.140e-18
Identity = 35/57 (61.40%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:  124 EGGYGADLRVTKLTEQEVVQVISHGRAGKGMPSFKGLIDDETLRMLATFVKEDLRLK 294
            EGGYGADLRVT LT +E+V VI++GR  KGMP FKG++D+E +  LA F+K++L+LK
Sbjct:    1 EGGYGADLRVTALTHEELVNVITNGRMSKGMPPFKGMLDEEKIETLANFIKQELKLK 57
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BLAST of mRNA_P-wetherbeei_contig57896.1.1 vs. uniprot
Match: UPI001BAAD63E (c-type cytochrome n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=UPI001BAAD63E)

HSP 1 Score: 60.8 bits (146), Expect = 2.180e-9
Identity = 29/69 (42.03%), Postives = 38/69 (55.07%), Query Frame = 1 
Query:   43 PRGGGRAAFEKFGCITCHMGDGRGGQNEGGYGADLRVTKLTEQEVVQVISHGRAGKGMPSFKGLIDDET 249
            P   G+A F K  C+ CH   G GG   GG    LR T+LT +++++ +S GR G GMP F     DET
Sbjct:   17 PTSAGKAVFAKANCMGCHKWHGNGGGGYGGDALSLRKTELTREQIIETVSCGRPGTGMPFFMRGAYDET 85
[Close]
BLAST of mRNA_P-wetherbeei_contig57896.1.1 vs. uniprot
Match: UPI00131D3581 (c-type cytochrome n=1 Tax=Bradyrhizobium sp. S69 TaxID=1641856 RepID=UPI00131D3581)

HSP 1 Score: 59.7 bits (143), Expect = 8.550e-9
Identity = 28/74 (37.84%), Postives = 41/74 (55.41%), Query Frame = 1 
Query:   25 RPEIKVPRGGGRAAFEKFGCITCHMGDGRGGQNEGGYGADLRVTKLTEQEVVQVISHGRAGKGMPSF-KGLIDD 243
            +P    P   G+A F++  C+ CH   G GG   GG    LR T+LT  ++++ +S GR G GMP F +G  D+
Sbjct:   33 QPPTADPTDAGKAVFKRANCMGCHKWHGNGGGGYGGDALSLRKTELTRDQIIETVSCGRPGTGMPFFVRGAYDE 106
[Close]
BLAST of mRNA_P-wetherbeei_contig57896.1.1 vs. uniprot
Match: A0A2K8YFA1_9BRAD (Cytochrome C n=4 Tax=Proteobacteria TaxID=1224 RepID=A0A2K8YFA1_9BRAD)

HSP 1 Score: 58.5 bits (140), Expect = 2.050e-8
Identity = 25/61 (40.98%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:   43 PRGGGRAAFEKFGCITCHMGDGRGGQNEGGYGADLRVTKLTEQEVVQVISHGRAGKGMPSF 225
            P   G+A F++  C+ CH   G GG   GG    LR T+LT +++++ +S GR G GMP F
Sbjct:   31 PTDAGKAVFKRGNCVGCHKWHGNGGGGYGGDALSLRKTELTREQIIETVSCGRPGTGMPFF 91
[Close]
BLAST of mRNA_P-wetherbeei_contig57896.1.1 vs. uniprot
Match: A0A109JWZ3_9BRAD (Cytochrome C n=5 Tax=Bradyrhizobium TaxID=374 RepID=A0A109JWZ3_9BRAD)

HSP 1 Score: 58.5 bits (140), Expect = 2.080e-8
Identity = 25/61 (40.98%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:   43 PRGGGRAAFEKFGCITCHMGDGRGGQNEGGYGADLRVTKLTEQEVVQVISHGRAGKGMPSF 225
            P   G+A F++  C+ CH   G GG   GG    LR T+LT +++++ +S GR G GMP F
Sbjct:   31 PTDAGKAVFKRGNCVGCHKWHGNGGGGYGGDALSLRKTELTREQIIETVSCGRPGTGMPFF 91
[Close]
BLAST of mRNA_P-wetherbeei_contig57896.1.1 vs. uniprot
Match: A0A401U2G9_CHIPU (Cytochrome c domain-containing protein (Fragment) n=1 Tax=Chiloscyllium punctatum TaxID=137246 RepID=A0A401U2G9_CHIPU)

HSP 1 Score: 57.0 bits (136), Expect = 3.300e-8
Identity = 24/61 (39.34%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:   43 PRGGGRAAFEKFGCITCHMGDGRGGQNEGGYGADLRVTKLTEQEVVQVISHGRAGKGMPSF 225
            P   G+A F++  C+ CH   G GG   GG    LR T+LT++++++ ++ GR G GMP F
Sbjct:   31 PTDAGKAVFKRGNCMGCHKWHGNGGGGYGGDALSLRKTELTKEQIIETVTCGRPGTGMPFF 91
[Close]
BLAST of mRNA_P-wetherbeei_contig57896.1.1 vs. uniprot
Match: A0A1E3EZ22_BRAEL (C-type cytochrome n=42 Tax=Bradyrhizobium TaxID=374 RepID=A0A1E3EZ22_BRAEL)

HSP 1 Score: 57.4 bits (137), Expect = 5.710e-8
Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:   43 PRGGGRAAFEKFGCITCHMGDGRGGQNEGGYGADLRVTKLTEQEVVQVISHGRAGKGMPSF 225
            P   G+A F++  C+ CH   G GG   GG    LR T+LT +++++ ++ GR G GMP F
Sbjct:   31 PTDAGKAVFKRGNCVGCHKWHGNGGGGYGGDALSLRKTELTREQIIETVTCGRPGTGMPFF 91
[Close]
BLAST of mRNA_P-wetherbeei_contig57896.1.1 vs. uniprot
Match: M4ZDH1_9BRAD (Cytochrome c domain-containing protein n=1 Tax=Bradyrhizobium oligotrophicum S58 TaxID=1245469 RepID=M4ZDH1_9BRAD)

HSP 1 Score: 57.0 bits (136), Expect = 7.880e-8
Identity = 25/61 (40.98%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:   43 PRGGGRAAFEKFGCITCHMGDGRGGQNEGGYGADLRVTKLTEQEVVQVISHGRAGKGMPSF 225
            P   G+A F++  C+ CH   G GG   GG    LR T+LT + +V+ ++ GR G GMP F
Sbjct:   30 PTEAGKAVFKRANCVGCHKWHGNGGGGYGGDALSLRKTQLTREHIVETVTCGRPGTGMPYF 90
[Close]
BLAST of mRNA_P-wetherbeei_contig57896.1.1 vs. uniprot
Match: H0T2M8_9BRAD (Cytochrome c domain-containing protein n=2 Tax=Bradyrhizobium sp. STM 3809 TaxID=551936 RepID=H0T2M8_9BRAD)

HSP 1 Score: 56.6 bits (135), Expect = 8.920e-8
Identity = 25/61 (40.98%), Postives = 34/61 (55.74%), Query Frame = 1 
Query:   43 PRGGGRAAFEKFGCITCHMGDGRGGQNEGGYGADLRVTKLTEQEVVQVISHGRAGKGMPSF 225
            P   G+A F++  C+ CH   G GG   GG    LR T LT  ++V+ ++ GR G GMP F
Sbjct:   21 PTDAGKAVFKRANCVGCHKWHGNGGGGYGGDALSLRQTHLTRDQIVETVTCGRPGTGMPYF 81
[Close]
BLAST of mRNA_P-wetherbeei_contig57896.1.1 vs. uniprot
Match: A0A7S9CN55_9BRAD (C-type cytochrome n=2 Tax=Bradyrhizobium genosp. L TaxID=83637 RepID=A0A7S9CN55_9BRAD)

HSP 1 Score: 56.6 bits (135), Expect = 1.150e-7
Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:   43 PRGGGRAAFEKFGCITCHMGDGRGGQNEGGYGADLRVTKLTEQEVVQVISHGRAGKGMPSF 225
            P   G+A F++  C+ CH   G GG   GG    LR T+LT +++++ ++ GR G GMP F
Sbjct:   33 PTDAGKAVFKRGNCMGCHKWHGNGGGGYGGDALSLRKTELTREQIIETVTCGRPGTGMPFF 93
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57896.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
UPI0019B397707.140e-1861.40Cytochrome c n=1 Tax=Prolixibacteraceae bacterium ... [more]
UPI001BAAD63E2.180e-942.03c-type cytochrome n=1 Tax=Bradyrhizobium lablabi T... [more]
UPI00131D35818.550e-937.84c-type cytochrome n=1 Tax=Bradyrhizobium sp. S69 T... [more]
A0A2K8YFA1_9BRAD2.050e-840.98Cytochrome C n=4 Tax=Proteobacteria TaxID=1224 Rep... [more]
A0A109JWZ3_9BRAD2.080e-840.98Cytochrome C n=5 Tax=Bradyrhizobium TaxID=374 RepI... [more]
A0A401U2G9_CHIPU3.300e-839.34Cytochrome c domain-containing protein (Fragment) ... [more]
A0A1E3EZ22_BRAEL5.710e-839.34C-type cytochrome n=42 Tax=Bradyrhizobium TaxID=37... [more]
M4ZDH1_9BRAD7.880e-840.98Cytochrome c domain-containing protein n=1 Tax=Bra... [more]
H0T2M8_9BRAD8.920e-840.98Cytochrome c domain-containing protein n=2 Tax=Bra... [more]
A0A7S9CN55_9BRAD1.150e-739.34C-type cytochrome n=2 Tax=Bradyrhizobium genosp. L... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57896contigP-wetherbeei_contig57896:123..419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1038859.AXAU01000010_gene1769
PFAMsCytochrom_C,Cytochrome_CBB3
Model size297
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.2e-09
EggNOG OGsCOG2010@1|root,COG2010@2|Bacteria,1R7BD@1224|Proteobacteria,2U52C@28211|Alphaproteobacteria,3JX9B@41294|Bradyrhizobiaceae
DescriptionCytochrome c
Cds size297
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186858.2390308-CDS-P-wetherbeei_contig57896:122..4191683186858.2390308-CDS-P-wetherbeei_contig57896:122..419Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57896 123..419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57896.1.1prot_P-wetherbeei_contig57896.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57896 123..419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57896.1.1

>prot_P-wetherbeei_contig57896.1.1 ID=prot_P-wetherbeei_contig57896.1.1|Name=mRNA_P-wetherbeei_contig57896.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=99bp
VAETDTGDRPEIKVPRGGGRAAFEKFGCITCHMGDGRGGQNEGGYGADLR
VTKLTEQEVVQVISHGRAGKGMPSFKGLIDDETLRMLATFVKEDLRLK*
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mRNA from alignment at P-wetherbeei_contig57896:123..419+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57896.1.1 ID=mRNA_P-wetherbeei_contig57896.1.1|Name=mRNA_P-wetherbeei_contig57896.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig57896:123..419+ (Phaeothamnion wetherbeei SAG_119_79)
GTTGCGGAGACGGACACCGGCGATCGGCCCGAGATCAAGGTGCCCCGTGG
AGGCGGCCGCGCAGCCTTCGAGAAGTTCGGTTGCATCACCTGCCACATGG
GCGATGGCCGAGGCGGCCAGAACGAGGGAGGCTACGGCGCGGATCTGCGT
GTGACCAAGCTGACGGAGCAGGAAGTCGTGCAAGTGATCAGCCACGGGCG
TGCCGGCAAAGGCATGCCGAGCTTCAAGGGGCTGATCGACGACGAGACGC
TGCGGATGCTGGCGACCTTCGTCAAGGAAGATCTGCGCCTGAAGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57896:123..419+

>mRNA_P-wetherbeei_contig57896.1.1 ID=mRNA_P-wetherbeei_contig57896.1.1|Name=mRNA_P-wetherbeei_contig57896.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig57896:123..419+ (Phaeothamnion wetherbeei SAG_119_79)
GTTGCGGAGACGGACACCGGCGATCGGCCCGAGATCAAGGTGCCCCGTGG
AGGCGGCCGCGCAGCCTTCGAGAAGTTCGGTTGCATCACCTGCCACATGG
GCGATGGCCGAGGCGGCCAGAACGAGGGAGGCTACGGCGCGGATCTGCGT
GTGACCAAGCTGACGGAGCAGGAAGTCGTGCAAGTGATCAGCCACGGGCG
TGCCGGCAAAGGCATGCCGAGCTTCAAGGGGCTGATCGACGACGAGACGC
TGCGGATGCTGGCGACCTTCGTCAAGGAAGATCTGCGCCTGAAGTAA
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