mRNA_P-wetherbeei_contig57894.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57894.1.1
Unique NamemRNA_P-wetherbeei_contig57894.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57894.1.1 vs. uniprot
Match: A0A7W6LP78_9SPHN (Uncharacterized protein n=3 Tax=Sphingobium TaxID=165695 RepID=A0A7W6LP78_9SPHN)

HSP 1 Score: 253 bits (647), Expect = 2.220e-78
Identity = 126/169 (74.56%), Postives = 142/169 (84.02%), Query Frame = 1
Query:    1 RPGQIAYLSVLSRWQLTLGERETDPVSPMFGEPRHFVLAGDTRQTRIHPSRVVCFKGLPVPAMLGTAWDDHFWGMSVVEAVDEAVQQATTACAGFAALIDEAKIDVFRFGGMAETIGHGPEGEATVMKRVELTTQGKSIHRAVILDKDDEWDQRQLTLAGVRDVIITYD 507
            RPGQI YLSVLSRWQL+LGE ETDP S  FG+PR+F L+G  RQ  IHPSRV  FKGLP+PA+  T+W+D+FWGMSVVEA DEAVQQATTACAGF+ LIDEAKIDVFRF G  E +   P+GEA +MKRVELT  GKS+HRAVILDK+DEW QRQL+LAGVRDVIITYD
Sbjct:  122 RPGQIRYLSVLSRWQLSLGEMETDPESDNFGQPRYFRLSGTGRQVDIHPSRVAVFKGLPIPAIRMTSWEDNFWGMSVVEACDEAVQQATTACAGFSVLIDEAKIDVFRFNGTVEQLSQ-PDGEAKLMKRVELTNTGKSVHRAVILDKEDEWVQRQLSLAGVRDVIITYD 289          
BLAST of mRNA_P-wetherbeei_contig57894.1.1 vs. uniprot
Match: A0A0Q8RA68_9SPHN (Uncharacterized protein n=1 Tax=Sphingomonas sp. Root720 TaxID=1736595 RepID=A0A0Q8RA68_9SPHN)

HSP 1 Score: 242 bits (618), Expect = 7.260e-74
Identity = 117/169 (69.23%), Postives = 137/169 (81.07%), Query Frame = 1
Query:    1 RPGQIAYLSVLSRWQLTLGERETDPVSPMFGEPRHFVLAGDTRQTRIHPSRVVCFKGLPVPAMLGTAWDDHFWGMSVVEAVDEAVQQATTACAGFAALIDEAKIDVFRFGGMAETIGHGPEGEATVMKRVELTTQGKSIHRAVILDKDDEWDQRQLTLAGVRDVIITYD 507
            RPGQI YL+VLSRW+L LGE + DP S  F +P+ + L G +RQ  IHPSRVVCF+GLP+PA  G  W+D FWGMSVVEAVDEAVQQATTACAGFAALIDEAKIDVFR  GMAE +   P GE  +++RVE+T  GKS+HRAV+LDK+DEW+QRQL L GVRDVI+TYD
Sbjct:  146 RPGQIRYLTVLSRWELNLGEEDRDPESDTFKQPKFYRLPGTSRQVDIHPSRVVCFRGLPIPAFPGMTWEDRFWGMSVVEAVDEAVQQATTACAGFAALIDEAKIDVFRLAGMAEQLLQ-PGGEDRLLQRVEMTNTGKSVHRAVVLDKEDEWEQRQLALTGVRDVIVTYD 313          
BLAST of mRNA_P-wetherbeei_contig57894.1.1 vs. uniprot
Match: UPI000831FE8D (DUF1073 domain-containing protein n=1 Tax=Sphingobium sp. CCH11-B1 TaxID=1768781 RepID=UPI000831FE8D)

HSP 1 Score: 172 bits (436), Expect = 2.800e-48
Identity = 87/167 (52.10%), Postives = 112/167 (67.07%), Query Frame = 1
Query:    4 PGQIAYLSVLSRWQLTLGERETDPVSPMFGEPRHFVLAGDTRQTRIHPSRVVCFKGLPVPAMLGTAWDDHFWGMSVVEAVDEAVQQATTACAGFAALIDEAKIDVFRFGGMAETIGHGPEGEATVMKRVELTTQGKSIHRAVILDKDDEWDQRQLTLAGVRDVIITY 504
            P  + YL VLSR QL LG+ ETDP SPMFGEPR F LAG      IHPSRV+ FKGLP P +  T  +D +WG S+++ VD+A++QA TA  GFA+LIDEAK+DVF   GM ET+   P GEA  M  ++ +  GKS +R + L + + W+ RQ+  AG+ DVI TY
Sbjct:  154 PNAVDYLVVLSRHQLQLGDMETDPASPMFGEPRWFRLAGGRNNIDIHPSRVIPFKGLPAPGLYATNAEDQYWGDSIIQTVDDAIKQAVTATQGFASLIDEAKVDVFTMPGMYETLAQ-PGGEAKFMAALQASAMGKSNYRMLALGEGETWETRQIAWAGMPDVIKTY 319          
BLAST of mRNA_P-wetherbeei_contig57894.1.1 vs. uniprot
Match: UPI001356EE3E (DUF1073 domain-containing protein n=1 Tax=unclassified Novosphingobium TaxID=2644732 RepID=UPI001356EE3E)

HSP 1 Score: 163 bits (413), Expect = 4.520e-45
Identity = 89/167 (53.29%), Postives = 114/167 (68.26%), Query Frame = 1
Query:    1 RPGQIAYLSVLSRWQLTLGERETDPVSPMFGEPRHFVLAGDTRQTRIHPSRVVCFKGLPVPAMLGTAWDDHFWGMSVVEAVDEAVQQATTACAGFAALIDEAKIDVFRFGGMAETIGHGPEGEATVMKRVELTTQGKSIHRAVILDKDDEWDQRQLTLAGVRDVIIT 501
            +P QI  L  L R QLTLG  + D +SP F EP  F L    R   IH +R++ FKGL VP+M  T WDD FWG SVV+ V+EAVQ AT+A +GFA+LIDEAK+DVF+F  +AET+   P G+A + KR++L TQ KSIHR++ LD DD W+ R L  AG +D+I T
Sbjct:  142 KPEQIENLVPLYRSQLTLGIADDDVLSPFFDEPVDFRLNTAARPL-IHRTRLIFFKGLMVPSMHFTNWDDRFWGDSVVQVVNEAVQNATSATSGFASLIDEAKVDVFKFAKLAETLVQ-PGGDAKIRKRIDLATQEKSIHRSISLDADDAWETRTLNFAGAKDMITT 306          
BLAST of mRNA_P-wetherbeei_contig57894.1.1 vs. uniprot
Match: UPI000CDB6F1F (DUF1073 domain-containing protein n=1 Tax=Novosphingobium sp. HII-3 TaxID=2075565 RepID=UPI000CDB6F1F)

HSP 1 Score: 161 bits (407), Expect = 3.710e-44
Identity = 87/167 (52.10%), Postives = 110/167 (65.87%), Query Frame = 1
Query:    1 RPGQIAYLSVLSRWQLTLGERETDPVSPMFGEPRHFVLAGDTRQTRIHPSRVVCFKGLPVPAMLGTAWDDHFWGMSVVEAVDEAVQQATTACAGFAALIDEAKIDVFRFGGMAETIGHGPEGEATVMKRVELTTQGKSIHRAVILDKDDEWDQRQLTLAGVRDVIIT 501
            +P QI  L  L R Q+TLG  + D +SP F EP  F L    R  +IH +R+V FKG PVP      W+D FWG SVV+ V+EAVQ ATTA AGFAALIDEAK+DVF+F  +AET+   P G+  + KR++L T  KSIHR+V LD +D W+ R L  AG +D+I T
Sbjct:  142 QPEQIVSLVPLYRTQITLGLPDDDVLSPYFDEPVDFALNTAARP-KIHRTRLVFFKGQPVPGFSSVNWEDRFWGDSVVQVVNEAVQNATTATAGFAALIDEAKVDVFKFAKLAETLA-APGGDEKIRKRIDLATTEKSIHRSVSLDAEDGWETRTLNFAGAKDMITT 306          
BLAST of mRNA_P-wetherbeei_contig57894.1.1 vs. uniprot
Match: A0A1G0I087_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_63_22 TaxID=1798290 RepID=A0A1G0I087_9GAMM)

HSP 1 Score: 158 bits (399), Expect = 3.670e-42
Identity = 83/161 (51.55%), Postives = 107/161 (66.46%), Query Frame = 1
Query:   13 IAYLSVLSRWQLTLGERETDPVSPMFGEPRHFVLAGDTRQTRIHPSRVVCFKGLPVPAMLGTAWDDHFWGMSVVEAVDEAVQQATTACAGFAALIDEAKIDVFRFGGMAETIGHGPEGEATVMKRVELTTQGKSIHRAVILDKDDEWDQRQLTLAGVRDVI 495
            + Y+ V +R++L+LGE+  D  SP +G P++F +A D +   IHPSR+V F G PVP M  T W+D FWG SV++ VD AV+ A  A  GFA LIDEAKIDV+R  G  E +      EATV +RVE T  GKS  R V LDKDDE+ QRQLTL G+ ++I
Sbjct:  143 LKYVHVFNRFELSLGEKNKDITSPWYGHPQYFRIASDYQSVPIHPSRMVVFPGAPVPNMGMTTWEDQFWGDSVIQRVDRAVKNAVKANDGFARLIDEAKIDVYRMAGFMEQLA---ANEATVRQRVEYTDAGKSSLRGVFLDKDDEFIQRQLTLTGMPEMI 300          
BLAST of mRNA_P-wetherbeei_contig57894.1.1 vs. uniprot
Match: A0A2W6WNT5_9SPHN (Portal protein n=2 Tax=Sphingobium TaxID=165695 RepID=A0A2W6WNT5_9SPHN)

HSP 1 Score: 157 bits (397), Expect = 7.040e-42
Identity = 79/161 (49.07%), Postives = 104/161 (64.60%), Query Frame = 1
Query:   13 IAYLSVLSRWQLTLGERETDPVSPMFGEPRHFVLAGDTRQTRIHPSRVVCFKGLPVPAMLGTAWDDHFWGMSVVEAVDEAVQQATTACAGFAALIDEAKIDVFRFGGMAETIGHGPEGEATVMKRVELTTQGKSIHRAVILDKDDEWDQRQLTLAGVRDVI 495
            + Y+ V +RW+LT+GE + D  S  FG+P+HF + G     +IHPSRV+ FKG PVP   G  W+DHFWG S+V  +D AV+ A  A  GFA +IDEAKID++R  G  + +      E  V KRV+ T  GKS  R V LDKDDE+ QRQLTL G+ ++I
Sbjct:  146 LKYVHVFNRWELTIGEEQRDITSLWFGQPQHFKINGKLDNPKIHPSRVIVFKGSPVPRFPGVTWEDHFWGDSIVFRIDRAVKNAIKANDGFARMIDEAKIDIYRLSGFMQNL---ISNEDEVRKRVQYTDAGKSSLRGVYLDKDDEFIQRQLTLTGMPEMI 303          
BLAST of mRNA_P-wetherbeei_contig57894.1.1 vs. uniprot
Match: A0A084EGT7_SPHYA (Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae TaxID=13690 RepID=A0A084EGT7_SPHYA)

HSP 1 Score: 155 bits (391), Expect = 4.660e-41
Identity = 79/167 (47.31%), Postives = 108/167 (64.67%), Query Frame = 1
Query:    1 RPGQ--IAYLSVLSRWQLTLGERETDPVSPMFGEPRHFVLAGDTRQTRIHPSRVVCFKGLPVPAMLGTAWDDHFWGMSVVEAVDEAVQQATTACAGFAALIDEAKIDVFRFGGMAETIGHGPEGEATVMKRVELTTQGKSIHRAVILDKDDEWDQRQLTLAGVRDVI 495
            +PG+  + Y+ V +RW+LT+GE + D  S  FG+P++F + G     +IHPSRV+ FKG PVP   G  W+DHFWG S+V  +D AV+ A  A  GFA +IDEAKID++R  G  + +      E  V KRV+ T  GKS  R V LDKDDE+ QRQL+L G+ ++I
Sbjct:  140 QPGKDSLKYVHVFNRWELTIGEEQRDITSLWFGQPQYFQINGKLDNPKIHPSRVIVFKGSPVPRFPGVTWEDHFWGDSIVFRIDRAVKNAIKANDGFARMIDEAKIDIYRLSGFMQNL---ISNEDEVRKRVQYTDAGKSSLRGVYLDKDDEFTQRQLSLTGMPEMI 303          
BLAST of mRNA_P-wetherbeei_contig57894.1.1 vs. uniprot
Match: A0A5B8CC48_SPHSA (DUF1073 domain-containing protein n=1 Tax=Sphingobium fuliginis ATCC 27551 TaxID=1208342 RepID=A0A5B8CC48_SPHSA)

HSP 1 Score: 153 bits (386), Expect = 2.730e-40
Identity = 81/161 (50.31%), Postives = 102/161 (63.35%), Query Frame = 1
Query:   13 IAYLSVLSRWQLTLGERETDPVSPMFGEPRHFVLAGDTRQTRIHPSRVVCFKGLPVPAMLGTAWDDHFWGMSVVEAVDEAVQQATTACAGFAALIDEAKIDVFRFGGMAETIGHGPEGEATVMKRVELTTQGKSIHRAVILDKDDEWDQRQLTLAGVRDVI 495
            + Y  V +RW+LT+ E E D  SP FG+PR F + G   Q RIHPSR+V FKG  VP   G  W+D+FWG SV+  VD AV+ A  A  GFA LIDEAKID++R  G  + +      E  V KRV+ T  GKS  R V LDKDDE+ QRQL+L G+ ++I
Sbjct:  146 LKYAHVFNRWELTVEEEERDVNSPWFGQPRFFRINGTVGQPRIHPSRMVVFKGARVPRFPGVTWEDYFWGDSVLTRVDRAVKNAIKANDGFARLIDEAKIDIYRLSGFMQNL---ISNEDAVRKRVQYTDAGKSSLRGVYLDKDDEFTQRQLSLTGMPEMI 303          
BLAST of mRNA_P-wetherbeei_contig57894.1.1 vs. uniprot
Match: A0A7W6BKL0_9SPHN (Uncharacterized protein n=3 Tax=Sphingobium jiangsuense TaxID=870476 RepID=A0A7W6BKL0_9SPHN)

HSP 1 Score: 149 bits (375), Expect = 1.930e-39
Identity = 81/167 (48.50%), Postives = 104/167 (62.28%), Query Frame = 1
Query:    4 PGQIAYLSVLSRWQLTLGERETDPVSPMFGEPRHFVLAGDTRQTRIHPSRVVCFKGLPVPAMLGTAWDDHFWGMSVVEAVDEAVQQATTACAGFAALIDEAKIDVFRFGGMAETIGHGPEGEATVMKRVELTTQGKSIHRAVILDKDDEWDQRQLTLAGVRDVIITY 504
            PG I  L  L R Q+ LG+ + D +SP FGEP  F +     Q  IHPSR+V FKG  VP +  T+W+D FWG SVV+ VDEAV+ ATTA  GFAALIDEAK+DV    GM E +   P G+   M  ++    GKSIHR + L + + W+ RQ+  AG+ +VI TY
Sbjct:  148 PGMIESLVPLYRTQIVLGQMDDDLLSPTFGEPTVFRV-NTHAQPIIHPSRLVIFKGQMVPGLYSTSWEDRFWGDSVVQVVDEAVKDATTATGGFAALIDEAKVDVLTMPGMYEMLAR-PGGQEQFMAALQAAATGKSIHRMLALGEGETWETRQINWAGMPEVIKTY 312          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57894.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7W6LP78_9SPHN2.220e-7874.56Uncharacterized protein n=3 Tax=Sphingobium TaxID=... [more]
A0A0Q8RA68_9SPHN7.260e-7469.23Uncharacterized protein n=1 Tax=Sphingomonas sp. R... [more]
UPI000831FE8D2.800e-4852.10DUF1073 domain-containing protein n=1 Tax=Sphingob... [more]
UPI001356EE3E4.520e-4553.29DUF1073 domain-containing protein n=1 Tax=unclassi... [more]
UPI000CDB6F1F3.710e-4452.10DUF1073 domain-containing protein n=1 Tax=Novosphi... [more]
A0A1G0I087_9GAMM3.670e-4251.55Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A2W6WNT5_9SPHN7.040e-4249.07Portal protein n=2 Tax=Sphingobium TaxID=165695 Re... [more]
A0A084EGT7_SPHYA4.660e-4147.31Uncharacterized protein n=1 Tax=Sphingobium yanoik... [more]
A0A5B8CC48_SPHSA2.730e-4050.31DUF1073 domain-containing protein n=1 Tax=Sphingob... [more]
A0A7W6BKL0_9SPHN1.930e-3948.50Uncharacterized protein n=3 Tax=Sphingobium jiangs... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57894contigP-wetherbeei_contig57894:1..507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog13690.CP98_03677
PFAMsDUF1073
Model size507
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K09961
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.64e-42
EggNOG OGsCOG3567@1|root,COG3567@2|Bacteria,1QNPU@1224|Proteobacteria,2U19C@28211|Alphaproteobacteria
DescriptionTIGRFAM phage-associated protein, HI1409 family
Cds size507
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186858.1716545-CDS-P-wetherbeei_contig57894:0..5071683186858.1716545-CDS-P-wetherbeei_contig57894:0..507Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57894 1..507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57894.1.1prot_P-wetherbeei_contig57894.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57894 1..507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57894.1.1

>prot_P-wetherbeei_contig57894.1.1 ID=prot_P-wetherbeei_contig57894.1.1|Name=mRNA_P-wetherbeei_contig57894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
RPGQIAYLSVLSRWQLTLGERETDPVSPMFGEPRHFVLAGDTRQTRIHPS
RVVCFKGLPVPAMLGTAWDDHFWGMSVVEAVDEAVQQATTACAGFAALID
EAKIDVFRFGGMAETIGHGPEGEATVMKRVELTTQGKSIHRAVILDKDDE
WDQRQLTLAGVRDVIITYD
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mRNA from alignment at P-wetherbeei_contig57894:1..507-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57894.1.1 ID=mRNA_P-wetherbeei_contig57894.1.1|Name=mRNA_P-wetherbeei_contig57894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig57894:1..507- (Phaeothamnion wetherbeei SAG_119_79)
CGGCCTGGCCAGATTGCCTACCTCTCGGTCCTGTCGCGCTGGCAGTTGAC GCTGGGCGAGCGCGAGACAGACCCGGTTTCACCCATGTTCGGGGAGCCGC GTCATTTCGTGCTTGCGGGTGATACCCGGCAGACGCGCATCCATCCCAGT CGCGTGGTGTGCTTCAAGGGGTTGCCTGTCCCGGCGATGCTGGGAACGGC ATGGGACGATCATTTCTGGGGCATGTCCGTGGTGGAGGCTGTCGATGAGG CGGTGCAGCAGGCAACGACAGCCTGCGCCGGTTTCGCGGCGCTGATCGAT GAGGCGAAGATCGACGTTTTCCGGTTCGGCGGGATGGCTGAAACCATCGG CCACGGCCCGGAAGGAGAAGCCACGGTGATGAAGCGCGTCGAACTGACGA CGCAGGGCAAGAGCATCCACCGCGCCGTCATCCTCGACAAAGATGATGAG TGGGATCAGCGCCAGTTGACGCTGGCGGGCGTCCGGGATGTCATCATCAC CTATGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57894:1..507-

>mRNA_P-wetherbeei_contig57894.1.1 ID=mRNA_P-wetherbeei_contig57894.1.1|Name=mRNA_P-wetherbeei_contig57894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig57894:1..507- (Phaeothamnion wetherbeei SAG_119_79)
CGGCCTGGCCAGATTGCCTACCTCTCGGTCCTGTCGCGCTGGCAGTTGAC
GCTGGGCGAGCGCGAGACAGACCCGGTTTCACCCATGTTCGGGGAGCCGC
GTCATTTCGTGCTTGCGGGTGATACCCGGCAGACGCGCATCCATCCCAGT
CGCGTGGTGTGCTTCAAGGGGTTGCCTGTCCCGGCGATGCTGGGAACGGC
ATGGGACGATCATTTCTGGGGCATGTCCGTGGTGGAGGCTGTCGATGAGG
CGGTGCAGCAGGCAACGACAGCCTGCGCCGGTTTCGCGGCGCTGATCGAT
GAGGCGAAGATCGACGTTTTCCGGTTCGGCGGGATGGCTGAAACCATCGG
CCACGGCCCGGAAGGAGAAGCCACGGTGATGAAGCGCGTCGAACTGACGA
CGCAGGGCAAGAGCATCCACCGCGCCGTCATCCTCGACAAAGATGATGAG
TGGGATCAGCGCCAGTTGACGCTGGCGGGCGTCCGGGATGTCATCATCAC
CTATGAC
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