mRNA_P-wetherbeei_contig57884.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57884.1.1
Unique NamemRNA_P-wetherbeei_contig57884.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig57884.1.1 vs. uniprot
Match: UPI001E2AD925 (hypothetical protein n=1 Tax=Tardiphaga sp. 37S4 TaxID=1404741 RepID=UPI001E2AD925)

HSP 1 Score: 47.8 bits (112), Expect = 4.720e-5
Identity = 29/93 (31.18%), Postives = 50/93 (53.76%), Query Frame = 1 
Query:    1 MPLFMFCLSKNSTAAEYGRALEQLEAQFPQHEFERVWDWEPAINNALIPVM-SEPHPTAPDRLVMKEIPARYIAAVKEAFKVVVDDLKSWRPS 276
            M  F+F L+ ++++A   RA+ +L+A FPQHEF           N ++ V  S      P  +V+  +    ++ V  AF+ +++DLK W+PS
Sbjct:    1 MTTFIFTLTPDASSAAVERAIAELDAAFPQHEFLAGDPDVGGFENTILAVHGSTGSGDLPGEIVLPNL--AQVSEVTMAFRQIIEDLKGWKPS 91
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57884.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001E2AD9254.720e-531.18hypothetical protein n=1 Tax=Tardiphaga sp. 37S4 T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57884contigP-wetherbeei_contig57884:166..444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size279
Hectar predicted targeting categoryother localisation
Exons1
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186858.0351799-CDS-P-wetherbeei_contig57884:165..4441683186858.0351799-CDS-P-wetherbeei_contig57884:165..444Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57884 166..444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57884.1.1prot_P-wetherbeei_contig57884.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57884 166..444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57884.1.1

>prot_P-wetherbeei_contig57884.1.1 ID=prot_P-wetherbeei_contig57884.1.1|Name=mRNA_P-wetherbeei_contig57884.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=93bp
MPLFMFCLSKNSTAAEYGRALEQLEAQFPQHEFERVWDWEPAINNALIPV
MSEPHPTAPDRLVMKEIPARYIAAVKEAFKVVVDDLKSWRPS*
back to top

mRNA from alignment at P-wetherbeei_contig57884:166..444-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57884.1.1 ID=mRNA_P-wetherbeei_contig57884.1.1|Name=mRNA_P-wetherbeei_contig57884.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig57884:166..444- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCCTCTTCATGTTCTGCCTGTCCAAAAATTCCACCGCGGCCGAGTA
CGGCCGCGCGCTGGAGCAACTGGAAGCGCAATTCCCGCAGCACGAATTCG
AGCGCGTCTGGGATTGGGAACCCGCGATCAACAACGCCTTGATTCCCGTG
ATGAGCGAGCCGCATCCGACCGCCCCGGATCGGCTGGTGATGAAGGAAAT
TCCGGCCAGGTACATCGCCGCCGTCAAAGAGGCGTTCAAGGTCGTCGTTG
ACGATTTGAAGAGTTGGCGGCCGTCATAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig57884:166..444-

>mRNA_P-wetherbeei_contig57884.1.1 ID=mRNA_P-wetherbeei_contig57884.1.1|Name=mRNA_P-wetherbeei_contig57884.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig57884:166..444- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCCTCTTCATGTTCTGCCTGTCCAAAAATTCCACCGCGGCCGAGTA
CGGCCGCGCGCTGGAGCAACTGGAAGCGCAATTCCCGCAGCACGAATTCG
AGCGCGTCTGGGATTGGGAACCCGCGATCAACAACGCCTTGATTCCCGTG
ATGAGCGAGCCGCATCCGACCGCCCCGGATCGGCTGGTGATGAAGGAAAT
TCCGGCCAGGTACATCGCCGCCGTCAAAGAGGCGTTCAAGGTCGTCGTTG
ACGATTTGAAGAGTTGGCGGCCGTCATAG
back to top