mRNA_P-wetherbeei_contig57881.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57881.1.1
Unique NamemRNA_P-wetherbeei_contig57881.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57881.1.1 vs. uniprot
Match: A0A6L5FL80_9HYPH (Heparinase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FL80_9HYPH)

HSP 1 Score: 235 bits (599), Expect = 1.100e-71
Identity = 108/170 (63.53%), Postives = 138/170 (81.18%), Query Frame = 1
Query:    1 DTGRPPPIEVSSDAHAGCLSFELSSKYQRIVVNCGIPATSRENWRQVARSTAAHSTAVFNDASSCEFLDNGAFKRLF-GTPIVRGPTEVAVAREETAGGALVLRTSHDGYVRRYGIVHHRTLMLSADGNRLDGEDEFLPPDGDLLPRGALDQFAIRFHLHPSVKANLLND 507
            DTG+PPP+ VS +AHAGCLSFE S+  QRIVVNCG+P T++E WR+VAR+TAAHST VFND SSC  L++G+F+RLF G+PI+ GPT+V V RE    GALV+R SHDGY  R+G++H RTLML+ADG+RL+GED FLP +GD +PR   D+F +RFHLHP+++AN L D
Sbjct:  333 DTGKPPPVSVSREAHAGCLSFEFSAGLQRIVVNCGLPGTNQEAWREVARATAAHSTVVFNDTSSCRLLESGSFRRLFAGSPIIAGPTDVPVTRE-APDGALVVRASHDGYAGRFGVIHQRTLMLTADGSRLEGEDVFLPSEGDHIPRE--DEFTVRFHLHPAIRANRLTD 499          
BLAST of mRNA_P-wetherbeei_contig57881.1.1 vs. uniprot
Match: A0A127ENE9_9HYPH (Heparinase II/III-like protein n=2 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127ENE9_9HYPH)

HSP 1 Score: 230 bits (587), Expect = 7.830e-70
Identity = 104/169 (61.54%), Postives = 132/169 (78.11%), Query Frame = 1
Query:    1 DTGRPPPIEVSSDAHAGCLSFELSSKYQRIVVNCGIPATSRENWRQVARSTAAHSTAVFNDASSCEFLDNGAFKRLFGTPIVRGPTEVAVAREETAGGALVLRTSHDGYVRRYGIVHHRTLMLSADGNRLDGEDEFLPPDGDLLPRGALDQFAIRFHLHPSVKANLLND 507
            D G PPPI VS +AHAGCLSFE+S   QRIVVNCG+P T++++WRQVAR+TAAHST VFND SSC FL++G+FK L GTPIV GPT+V ++RE+   G  +LR SH+GY  R+ ++H R L LS DG RLDGED F+  +GDL+P+   D+FA+RFHLHP++KAN L D
Sbjct:  337 DAGAPPPINVSQEAHAGCLSFEMSHGLQRIVVNCGLPGTNKDSWRQVARATAAHSTVVFNDTSSCRFLESGSFKGLLGTPIVSGPTDVQMSREDRGDGT-ILRASHNGYGDRFKVLHQRALKLSTDGTRLDGEDFFVATEGDLIPQDVQDEFAVRFHLHPTIKANKLTD 504          
BLAST of mRNA_P-wetherbeei_contig57881.1.1 vs. uniprot
Match: A0A537N5N1_9PROT (Heparinase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537N5N1_9PROT)

HSP 1 Score: 229 bits (583), Expect = 3.250e-69
Identity = 107/169 (63.31%), Postives = 128/169 (75.74%), Query Frame = 1
Query:    1 DTGRPPPIEVSSDAHAGCLSFELSSKYQRIVVNCGIPATSRENWRQVARSTAAHSTAVFNDASSCEFLDNGAFKRLFGTPIVRGPTEVAVAREETAGGALVLRTSHDGYVRRYGIVHHRTLMLSADGNRLDGEDEFLPPDGDLLPRGALDQFAIRFHLHPSVKANLLND 507
            DTGR PP+ VS +AHAG LSFELSS   RIVVNCG+P TSRE+WR VAR+TAAHST  FND SSC+FL  G  +R  G PI+ GPTEV V+R++     + +R SHDGY  R+G+VH R+L L+ADG+RLDGED FLP  GD LP G  D FA+RFHLHP+VKAN L+D
Sbjct:  344 DTGRAPPVGVSQEAHAGFLSFELSSNQHRIVVNCGLPPTSRESWRPVARATAAHSTVTFNDVSSCQFLGPGPLQRFLGAPIIEGPTEVPVSRQDRED-TIQVRASHDGYAGRFGVVHQRSLRLAADGSRLDGEDRFLPAHGDKLPSGRADAFAVRFHLHPAVKANRLSD 511          
BLAST of mRNA_P-wetherbeei_contig57881.1.1 vs. uniprot
Match: A0A6N7GPL4_9HYPH (Heparinase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GPL4_9HYPH)

HSP 1 Score: 228 bits (581), Expect = 5.560e-69
Identity = 107/170 (62.94%), Postives = 131/170 (77.06%), Query Frame = 1
Query:    1 DTGRPPPIEVSSDAHAGCLSFELSSKYQRIVVNCGIPATSRENWRQVARSTAAHSTAVFNDASSCEFLDNGAFKRLF-GTPIVRGPTEVAVAREETAGGALVLRTSHDGYVRRYGIVHHRTLMLSADGNRLDGEDEFLPPDGDLLPRGALDQFAIRFHLHPSVKANLLND 507
            DTG+PPP+  S +AHAGCLSFELS+K+ RIVVNCG+PA+ R++WRQVAR+T+AHSTA FND SSC F+++G  +RL  G PI+ GP  V  AREE   GA VLRTSHDGY   +G++H R LMLSADG+RLDGED F P + ++      DQFA+RFHLHPSVKAN L D
Sbjct:  337 DTGQPPPMPASQEAHAGCLSFELSAKFNRIVVNCGLPASGRDSWRQVARATSAHSTAAFNDVSSCRFIESGPIRRLLQGAPIITGPRNVETAREEGEEGAQVLRTSHDGYAENFGVIHRRALMLSADGSRLDGEDVFNPLNDEISANH--DQFALRFHLHPSVKANRLQD 504          
BLAST of mRNA_P-wetherbeei_contig57881.1.1 vs. uniprot
Match: A0A833GEJ8_9HYPH (Heparinase n=1 Tax=Pseudorhodoplanes sp. TaxID=1934341 RepID=A0A833GEJ8_9HYPH)

HSP 1 Score: 226 bits (575), Expect = 5.480e-68
Identity = 105/169 (62.13%), Postives = 125/169 (73.96%), Query Frame = 1
Query:    1 DTGRPPPIEVSSDAHAGCLSFELSSKYQRIVVNCGIPATSRENWRQVARSTAAHSTAVFNDASSCEFLDNGAFKRLFGTPIVRGPTEVAVAREETAGGALVLRTSHDGYVRRYGIVHHRTLMLSADGNRLDGEDEFLPPDGDLLPRGALDQFAIRFHLHPSVKANLLND 507
            DTG PPP+ +S +AHAG LSFELS    R+VVNCG+PA +RE+WRQVAR+TAAHST  F D SSC FL+ G F+RL G P++ GP  V + R+     A+V+R SHDGY RR+G+VH R +ML+A G RLDGED FLP  G  LP GA D FAIRFHLHPSVKAN L D
Sbjct:  337 DTGTPPPLRLSQEAHAGTLSFELSKDVHRVVVNCGLPAINRESWRQVARATAAHSTVTFGDVSSCRFLNTGPFRRLLGIPVINGPGAVELTRD-VHDDAIVIRASHDGYARRFGVVHQRAIMLAAAGTRLDGEDVFLPAAGKALPPGAKDDFAIRFHLHPSVKANRLTD 504          
BLAST of mRNA_P-wetherbeei_contig57881.1.1 vs. uniprot
Match: A0A345ZZY8_9HYPH (Heparinase n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZZY8_9HYPH)

HSP 1 Score: 225 bits (574), Expect = 6.290e-68
Identity = 108/170 (63.53%), Postives = 128/170 (75.29%), Query Frame = 1
Query:    1 DTGRPPPIEVSSDAHAGCLSFELSSKYQRIVVNCGIPATSRENWRQVARSTAAHSTAVFNDASSCEFLDNGAFKRLF-GTPIVRGPTEVAVAREETAGGALVLRTSHDGYVRRYGIVHHRTLMLSADGNRLDGEDEFLPPDGDLLPRGALDQFAIRFHLHPSVKANLLND 507
            DTGRPPP+ VS +AHAGCLSFELS K QR+V+NCG+PA ++ENWRQVAR TAAHST   ND SSC FL++G  ++L  GTPIV GP +V   R+E A G L LR SHDGYV  +GIVH RT+ LS DG  LDGED F PPDG  L     D++A+RFHLHP+VKAN L+D
Sbjct:  337 DTGRPPPVGVSQEAHAGCLSFELSWKQQRLVINCGLPAVNKENWRQVARQTAAHSTGTLNDKSSCRFLESGTARKLLSGTPIVAGPRDVRSERDENAEGTL-LRASHDGYVDDFGIVHTRTIRLSQDGRLLDGEDSFAPPDGRALSVNVGDEYAVRFHLHPAVKANRLSD 505          
BLAST of mRNA_P-wetherbeei_contig57881.1.1 vs. uniprot
Match: A0A363TRH8_9BRAD (Heparinase n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A363TRH8_9BRAD)

HSP 1 Score: 222 bits (566), Expect = 8.810e-67
Identity = 109/170 (64.12%), Postives = 129/170 (75.88%), Query Frame = 1
Query:    1 DTGRPPPIEVSSDAHAGCLSFELSSKYQRIVVNCGIPATSRENWRQVARSTAAHSTAVFNDASSCEFLDNGAFKRLFGTPIVRGPTEVAVAR-EETAGGALVLRTSHDGYVRRYGIVHHRTLMLSADGNRLDGEDEFLPPDGDLLPRGALDQFAIRFHLHPSVKANLLND 507
            DTGRPPP+ +S +A AGCLSFELSSK  RIVVNCG+PATSRE WR+VAR+TAAHST  FND SS  FL  G  +RL G+PIV GPT+V V R ++ AG AL  R SH+GY  RYG+VH R+L L+ADG RL+GED FLP  G+ LP G  D FA+RFHLHP VK + L+D
Sbjct:  334 DTGRPPPLAMSQEADAGCLSFELSSKTYRIVVNCGLPATSRETWREVARATAAHSTVTFNDTSSARFLATGPLRRLVGSPIVSGPTDVPVTRLDDEAGPAL--RASHNGYADRYGVVHQRSLWLTADGRRLEGEDMFLPARGNKLPSGRPDLFAVRFHLHPLVKVSRLSD 501          
BLAST of mRNA_P-wetherbeei_contig57881.1.1 vs. uniprot
Match: A0A1W6ZZP2_9HYPH (Heparinase n=2 Tax=Pseudorhodoplanes sinuspersici TaxID=1235591 RepID=A0A1W6ZZP2_9HYPH)

HSP 1 Score: 221 bits (564), Expect = 2.040e-66
Identity = 99/169 (58.58%), Postives = 133/169 (78.70%), Query Frame = 1
Query:    1 DTGRPPPIEVSSDAHAGCLSFELSSKYQRIVVNCGIPATSRENWRQVARSTAAHSTAVFNDASSCEFLDNGAFKRLFGTPIVRGPTEVAVAREETAGGALVLRTSHDGYVRRYGIVHHRTLMLSADGNRLDGEDEFLPPDGDLLPRGALDQFAIRFHLHPSVKANLLND 507
            DTG+ PP+  S +AHAGCLSFE+ +  QRIVVNCG+PA +RE+WRQVAR+TAAHST  FN+ SS  F + G F++L G P+V GP+EVA+AR++T   A++LR SHDGY  R+GI+H R++ML+A G +L+GED F P  G++LP GA D+FA+RFHLHPS+KA+ + D
Sbjct:  334 DTGKAPPVAASQEAHAGCLSFEMCAGGQRIVVNCGLPAINRESWRQVARATAAHSTVTFNNTSSYRFREEGPFRKLIGVPVVDGPSEVAIARDDTEE-AILLRASHDGYSSRFGIIHQRSVMLTAGGTKLEGEDVFTPTHGEMLPPGARDEFAVRFHLHPSIKASRIAD 501          
BLAST of mRNA_P-wetherbeei_contig57881.1.1 vs. uniprot
Match: UPI00180F3F53 (Heparinase II/III family protein n=1 Tax=Rhodoplanes sp. TaxID=1968906 RepID=UPI00180F3F53)

HSP 1 Score: 216 bits (550), Expect = 1.840e-64
Identity = 99/169 (58.58%), Postives = 125/169 (73.96%), Query Frame = 1
Query:    1 DTGRPPPIEVSSDAHAGCLSFELSSKYQRIVVNCGIPATSRENWRQVARSTAAHSTAVFNDASSCEFLDNGAFKRLFGTPIVRGPTEVAVAREETAGGALVLRTSHDGYVRRYGIVHHRTLMLSADGNRLDGEDEFLPPDGDLLPRGALDQFAIRFHLHPSVKANLLND 507
            DTG PPP+ +S+DAHAGCLSFELSS+ QRIVVNCG+PAT + NWR +AR+TAAHST  FN  SSCEF D    +R+FGT I  GP  V +AR+       V R SHDGY  R+G++H RTL L+ADG RL+GED FLP  G+ LP  A D+FA+RFHL+P+++A  ++D
Sbjct:  326 DTGSPPPLALSADAHAGCLSFELSSRQQRIVVNCGLPATGKGNWRHLARATAAHSTVTFNQTSSCEFYDTRLLRRVFGTLIAAGPRRVVIARDADDHAEQV-RVSHDGYAERFGVIHQRTLTLAADGTRLEGEDIFLPARGEALPAKAPDEFAVRFHLNPAIRATRIHD 493          
BLAST of mRNA_P-wetherbeei_contig57881.1.1 vs. uniprot
Match: A0A537TXM8_9PROT (Heparinase n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537TXM8_9PROT)

HSP 1 Score: 215 bits (547), Expect = 6.310e-64
Identity = 104/170 (61.18%), Postives = 123/170 (72.35%), Query Frame = 1
Query:    1 DTGRPPPIEVSSDAHAGCLSFELSSKYQRIVVNCGIPATSRENWRQVARSTAAHSTAVFNDASSCEFLDNGAFKR-LFGTPIVRGPTEVAVAREETAGGALVLRTSHDGYVRRYGIVHHRTLMLSADGNRLDGEDEFLPPDGDLLPRGALDQFAIRFHLHPSVKANLLND 507
            D G PPP+ VS +AHAGCLSFELS+K  RIVVNCG+P  SRE WRQVAR+TAAHST   ND SSC F+  G  +R L GTP++ GP  V VAREE  G   VLR SHDGY   + ++H R LML+ADG  L+GED F P  G+L+P    DQFA+RFHLHPS+KAN L+D
Sbjct:  337 DAGCPPPMAVSQEAHAGCLSFELSAKQNRIVVNCGLPVASREGWRQVARTTAAHSTVTLNDTSSCRFIGAGPVRRMLHGTPMIAGPRHVTVAREEQ-GSTTVLRASHDGYADIFNVIHERILMLTADGRGLEGEDLFTPAQGELMPANR-DQFAVRFHLHPSIKANRLSD 504          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57881.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L5FL80_9HYPH1.100e-7163.53Heparinase n=1 Tax=Hyphomicrobiales bacterium TaxI... [more]
A0A127ENE9_9HYPH7.830e-7061.54Heparinase II/III-like protein n=2 Tax=Rhodoplanes... [more]
A0A537N5N1_9PROT3.250e-6963.31Heparinase n=1 Tax=Alphaproteobacteria bacterium T... [more]
A0A6N7GPL4_9HYPH5.560e-6962.94Heparinase n=1 Tax=Hyphomicrobiales bacterium TaxI... [more]
A0A833GEJ8_9HYPH5.480e-6862.13Heparinase n=1 Tax=Pseudorhodoplanes sp. TaxID=193... [more]
A0A345ZZY8_9HYPH6.290e-6863.53Heparinase n=1 Tax=Pseudolabrys taiwanensis TaxID=... [more]
A0A363TRH8_9BRAD8.810e-6764.12Heparinase n=1 Tax=Bradyrhizobiaceae bacterium Tax... [more]
A0A1W6ZZP2_9HYPH2.040e-6658.58Heparinase n=2 Tax=Pseudorhodoplanes sinuspersici ... [more]
UPI00180F3F531.840e-6458.58Heparinase II/III family protein n=1 Tax=Rhodoplan... [more]
A0A537TXM8_9PROT6.310e-6461.18Heparinase n=3 Tax=Alphaproteobacteria bacterium T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57881contigP-wetherbeei_contig57881:1..507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1038860.AXAP01000026_gene1802
Preferred nameMA20_25080
PFAMsHepar_II_III
Model size507
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.85e-63
EggNOG OGsCOG5360@1|root,COG5360@2|Bacteria,1MUJ4@1224|Proteobacteria,2TR5G@28211|Alphaproteobacteria,3JRZV@41294|Bradyrhizobiaceae
DescriptionHeparinase II/III-like protein
Cds size507
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186858.0014277-CDS-P-wetherbeei_contig57881:0..5071683186858.0014277-CDS-P-wetherbeei_contig57881:0..507Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57881 1..507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57881.1.1prot_P-wetherbeei_contig57881.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57881 1..507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57881.1.1

>prot_P-wetherbeei_contig57881.1.1 ID=prot_P-wetherbeei_contig57881.1.1|Name=mRNA_P-wetherbeei_contig57881.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
DTGRPPPIEVSSDAHAGCLSFELSSKYQRIVVNCGIPATSRENWRQVARS
TAAHSTAVFNDASSCEFLDNGAFKRLFGTPIVRGPTEVAVAREETAGGAL
VLRTSHDGYVRRYGIVHHRTLMLSADGNRLDGEDEFLPPDGDLLPRGALD
QFAIRFHLHPSVKANLLND
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mRNA from alignment at P-wetherbeei_contig57881:1..507-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57881.1.1 ID=mRNA_P-wetherbeei_contig57881.1.1|Name=mRNA_P-wetherbeei_contig57881.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig57881:1..507- (Phaeothamnion wetherbeei SAG_119_79)
GATACCGGCCGCCCGCCGCCGATCGAAGTGTCGTCCGACGCCCATGCCGG CTGCCTGTCTTTCGAACTGTCGTCGAAATATCAGCGGATCGTGGTCAATT GCGGGATACCCGCCACCAGCCGGGAAAACTGGCGCCAGGTGGCGCGCTCC ACCGCCGCGCATTCAACGGCGGTGTTCAACGACGCTTCGTCCTGCGAATT TCTCGACAATGGCGCGTTCAAGCGTCTGTTCGGGACGCCCATCGTCCGCG GACCGACCGAGGTCGCGGTGGCGCGCGAGGAAACCGCCGGCGGCGCCTTG GTGCTGCGAACCTCCCATGACGGTTATGTCAGGCGCTACGGCATCGTGCA TCACCGCACGCTGATGCTGTCCGCCGACGGCAACCGGCTCGATGGCGAGG ATGAATTCCTGCCGCCGGACGGCGATCTGTTGCCGCGCGGCGCGCTCGAC CAGTTCGCGATCCGGTTTCATCTGCATCCCAGCGTCAAGGCGAATCTGCT GAATGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57881:1..507-

>mRNA_P-wetherbeei_contig57881.1.1 ID=mRNA_P-wetherbeei_contig57881.1.1|Name=mRNA_P-wetherbeei_contig57881.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig57881:1..507- (Phaeothamnion wetherbeei SAG_119_79)
GATACCGGCCGCCCGCCGCCGATCGAAGTGTCGTCCGACGCCCATGCCGG
CTGCCTGTCTTTCGAACTGTCGTCGAAATATCAGCGGATCGTGGTCAATT
GCGGGATACCCGCCACCAGCCGGGAAAACTGGCGCCAGGTGGCGCGCTCC
ACCGCCGCGCATTCAACGGCGGTGTTCAACGACGCTTCGTCCTGCGAATT
TCTCGACAATGGCGCGTTCAAGCGTCTGTTCGGGACGCCCATCGTCCGCG
GACCGACCGAGGTCGCGGTGGCGCGCGAGGAAACCGCCGGCGGCGCCTTG
GTGCTGCGAACCTCCCATGACGGTTATGTCAGGCGCTACGGCATCGTGCA
TCACCGCACGCTGATGCTGTCCGCCGACGGCAACCGGCTCGATGGCGAGG
ATGAATTCCTGCCGCCGGACGGCGATCTGTTGCCGCGCGGCGCGCTCGAC
CAGTTCGCGATCCGGTTTCATCTGCATCCCAGCGTCAAGGCGAATCTGCT
GAATGAC
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