mRNA_P-wetherbeei_contig5788.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig5788.5.1 vs. uniprot
Match: D7FP86_ECTSI (Cnd1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP86_ECTSI) HSP 1 Score: 100 bits (250), Expect = 1.770e-20 Identity = 85/239 (35.56%), Postives = 116/239 (48.54%), Query Frame = 1
Query: 58 PMLALVQHLCTQAPERADVRSRVSSAVLTLLRRLPAGARGRFAVFLQRLSRSPKVPVRGFAVEIASRLLREPWLWEKSDQATDVIGAEDIGETGGGSGSXXXXXXXXXXXXXXXXXXXXXXXXXGQAVALLQVMVSRCSDKAPTVRSRAAAALCGALEHNTPSSPTPTAGFAIAAAXXXXXVPAAIPSLRSAALSLSG----GADSAGEAPLLEVLRLRVRDDKAAVRRYAVAALGALL 762
P+L L+QHLC +PERA+ R+R++ + LL L R RF VFL +LSRS K+ RGF+VE++SRLL E W W ATD + D G G G+ G +L ++V+R +D APTVRS+AA+ L L +G+ A + A + G G + + PLLE +R RV D+KA VRR AV AL A+L
Sbjct: 452 PVLTLLQHLCVSSPERAEGRARLAEGLAALLPELEEPDRVRFVVFLAKLSRSAKIVHRGFSVELSSRLLTEDWPW-----ATDDSSSAD----GSGEGAAVSTPRANGDADGPSPCLTD-----GGGRTMLDLVVARAADTAPTVRSKAASTLSEVLS----GIQGRRSGYKGGA-------------FQQAVMEACGWGEAGMERRHDGPLLETIRTRVEDEKANVRRNAVPALEAIL 659
BLAST of mRNA_P-wetherbeei_contig5788.5.1 vs. uniprot
Match: A0A6H5JQJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ4_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 5.350e-14 Identity = 77/244 (31.56%), Postives = 106/244 (43.44%), Query Frame = 1
Query: 58 PMLALVQHLCTQAPERADVRSRVSSAVLTLLRRLPAGARGRFAVFLQRLSRSPKVPVRGFAVEIASRLLREPWLWEKSDQAT-----DVIGAEDIGETGGGSGSXXXXXXXXXXXXXXXXXXXXXXXXXGQAVALLQVMVSRCSDKAPTVRSRAAAALCGALEHNTPSSPTPTAGFAIAAAXXXXXVPAAIPSLRSAALSLSG----GADSAGEAPLLEVLRLRVRDDKAAVRRYAVAALGALL 762
P+L L+QHLC +PERA+ R+R++ + LL L R RF VFL A E++SRLL E W W D ++ + + GGG G G +L ++V+R +D APTVRS+AA+ L L +G+ AA R A + G G + + PLLE +R RV D+KA VRR AV AL A+L
Sbjct: 330 PVLTLLQHLCVSSPERAEGRARLAEGLAGLLPELEEHDRARFVVFL--------------AKELSSRLLTEDWPWATDDNSSADGSREGPAVSTLRANGGGDGPSPCLTD-------------------GGGRTMLDLVVARAADTAPTVRSKAASTLSEVLS----GIQGRRSGYKGAA-------------FRQAVMEACGWGEAGMERGHDGPLLETIRTRVEDEKANVRRNAVPALEAIL 523
BLAST of mRNA_P-wetherbeei_contig5788.5.1 vs. uniprot
Match: A0A4D9DCZ0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCZ0_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 8.080e-14 Identity = 89/264 (33.71%), Postives = 115/264 (43.56%), Query Frame = 1
Query: 1 GRGSCGGARAAQAPSTPFLPMLALVQHLCTQAPERADVRSRVSSAVLTLLRRLPAGARG---RFAVFLQRLSRSPKVPVRGFAVEIASRLLREPWLWEKSD------QATDVIGAEDIGETGGGSGSXXXXXXXXXXXXXXXXXXXXXXXXXGQAVALLQVMVSRCSDKAPTVRSRAAAALCGALEHNTPSSPTPTAGFAIAA-AXXXXXVPAAIPSLRSAALSLSGGADSAGEAPLLEVLRLRVRDDKAAVRRYAVAALGALL 762
GRG G R P+ +LA+++H+C AP+RADVR+R+ +VL+LL L A RF VFL RL RS KV R F VEIA+ + W W + A IG+E I + GGG + V L+Q SR DKAPTVR+RA L L P AI A A S + A A L+ ++R R +DDKA VR+ A+ AL LL
Sbjct: 445 GRGKSKGKRRT-VPADLHTTVLAVLEHMCADAPDRADVRARLVDSVLSLLEALQRVAPELGPRFIVFLARLLRSTKVANRAFGVEIAASFVNATWAWPSATVTASGGNAAAEIGSEQI-KVGGGKEAATDAEAVKATW--------------ASLVELVQSFASRVVDKAPTVRARAMVCLSEMLLSVQEDVAPPGLRKAILALAFPEPRQGQRESSTATTAQHTEKAAADPSTQDLVCLVRSRCQDDKAVVRKAALQALEILL 692
BLAST of mRNA_P-wetherbeei_contig5788.5.1 vs. uniprot
Match: A0A8B8D1C8_CRAVI (condensin-2 complex subunit D3-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8D1C8_CRAVI) HSP 1 Score: 66.2 bits (160), Expect = 1.080e-8 Identity = 48/154 (31.17%), Postives = 73/154 (47.40%), Query Frame = 1
Query: 52 FLPMLALVQHLCTQAPERADVRSRVSSAVLTLLRRLPAGARGRFAVFLQRLSRSPKVPVRGFAVEIASRLLREPWLWEKSDQATDVIGAEDIGETGGGSGSXXXXXXXXXXXXXXXXXXXXXXXXXGQAVALLQVMVSRCSDKAPTVRSRAAAA 513
F + L+QHLCT+ +RA+ R++V+ AV+++L +P+G G+ + RLS+ K+ R F ++I S LL P + D T A + T +LL +++ RCSD APTVRSRA AA
Sbjct: 351 FSSIRTLLQHLCTKVTDRAEYRTKVAQAVVSILHEMPSGPFGKMVEWFYRLSKHSKMSNRAFTIDIVSLLLSSPE--REIDDNTPPEMASYVRHT-----------------------------------SLLGILLDRCSDAAPTVRSRAIAA 467
BLAST of mRNA_P-wetherbeei_contig5788.5.1 vs. uniprot
Match: UPI001B7DD4D3 (condensin-2 complex subunit D3 n=3 Tax=Acipenseroidei TaxID=186622 RepID=UPI001B7DD4D3) HSP 1 Score: 65.1 bits (157), Expect = 2.610e-8 Identity = 51/158 (32.28%), Postives = 73/158 (46.20%), Query Frame = 1
Query: 70 LVQHLCTQAPERADVRSRVSSAVLTLLRRLPAGARGRFAVFLQRLSRSPKVPVRGFAVEIASRLLREPWLWEKSDQATDVIGAEDIGETGGGSGSXXXXXXXXXXXXXXXXXXXXXXXXXGQAVALLQVMV-SRCSDKAPTVRSRAAAALCGALEHNT 540
L+QH+C + ++AD R+ + A++ LL +LP F +L SR K+P R FA+++A LL +P QA + + E + Q L+QVMV RCSDKAPTVRSRA ++L LE T
Sbjct: 352 LLQHICAKVTDKADYRTYGAQALVKLLSKLPCVEYAAFIKWLYNYSRHTKIPYRVFALDVAMALLEQP-----ERQADEAVPPEQV--------------------------------QFLQHRFLIQVMVLGRCSDKAPTVRSRALSSLAQCLELQT 472
BLAST of mRNA_P-wetherbeei_contig5788.5.1 vs. uniprot
Match: UPI0014258B34 (condensin-2 complex subunit D3-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014258B34) HSP 1 Score: 65.1 bits (157), Expect = 2.640e-8 Identity = 44/151 (29.14%), Postives = 71/151 (47.02%), Query Frame = 1
Query: 52 FLPMLALVQHLCTQAPERADVRSRVSSAVLTLLRRLPAGARGRFAVFLQRLSRSPKVPVRGFAVEIASRLLREPWLWEKSDQATDVIGAEDIGETGGGSGSXXXXXXXXXXXXXXXXXXXXXXXXXGQAVALLQVMVSRCSDKAPTVRSRA 504
F+ L+QHLC + P+R++ R R++S+V T+L LP F +L + S++ K+ R FA+E+ S +L +K+ V G D + LL++++SRCSDKAPTVR++A
Sbjct: 356 FISTRVLLQHLCVKVPDRSEYRPRIASSVTTILATLPTSFNASFMQWLYKYSKNTKIGFRVFALEVVSVMLENS---QKNSHQGGVNGVPDTQQV-------------------------------TSHQVLLRMLLSRCSDKAPTVRAKA 472
BLAST of mRNA_P-wetherbeei_contig5788.5.1 vs. uniprot
Match: A0A7K8TPC5_OCEOC (CNDD3 protein (Fragment) n=1 Tax=Oceanites oceanicus TaxID=79653 RepID=A0A7K8TPC5_OCEOC) HSP 1 Score: 63.2 bits (152), Expect = 1.150e-7 Identity = 64/244 (26.23%), Postives = 102/244 (41.80%), Query Frame = 1
Query: 70 LVQHLCTQAPERADVRSRVSSAVLTLLRRLPAGARGRFAVFLQRLSRSPKVPVRGFAVEIASRLLREPWLWEKSDQATDVIGAEDIGETGGGSGSXXXXXXXXXXXXXXXXXXXXXXXXXGQAVALLQVMV-SRCSDKAPTVRSRAAAALCGALE-------------------HNTPSSPTPTAGFAIAAAXXXXXVPAAIPSLRSAALSLSGGADSAGEAPLLEVLRLRVRDDKAAVRRYAV 741
L+QH+CT+ P++AD R+ + A++TLL +LP F +L + SR+ ++ R FA+++A LL P S + D + L+QVMV RCSD+APTVRS+A ++ LE H + T TA ++A +P+ ++ L+ S ++ +LRLR D+K VRR A+
Sbjct: 338 LLQHICTKVPDKADYRTYAAQALVTLLNKLPCIEFADFISWLYKYSRNTRIAYRVFALDVALALLDVPERNLDSSLSLD-------------------------------------HQKFLKHKFLVQVMVFGRCSDRAPTVRSKALSSFAHCLEMKAAATLESIQDLLQSSSDHTVLEANTNTASLIVSAEAMSNHPLRTLPTFKTIELTDSSNTAVLDGKEIMAMLRLRAADEKTNVRRSAL 544
BLAST of mRNA_P-wetherbeei_contig5788.5.1 vs. uniprot
Match: L9KQP3_TUPCH (Condensin-2 complex subunit D3 n=4 Tax=Tupaia chinensis TaxID=246437 RepID=L9KQP3_TUPCH) HSP 1 Score: 62.4 bits (150), Expect = 2.090e-7 Identity = 58/233 (24.89%), Postives = 103/233 (44.21%), Query Frame = 1
Query: 70 LVQHLCTQAPERADVRSRVSSAVLTLLRRLPAGARGRFAVFLQRLSRSPKVPVRGFAVEIASRLLREPWLWEKSDQATDVIGAEDIGETGGGSGSXXXXXXXXXXXXXXXXXXXXXXXXXGQAVALLQVMVSRCSDKAPTVRSRAAAALCGALEHNTPSSPTPTAGFAIAAAXXXXXVPAAIPSLRSAALSLSGGADS--AGEAPLLEVLRLRVRDDKAAVRRYAVAALGALL 762
L+QH+C + ++++ R+ + +++ LL +LP F + R SRSPK+P R F +++ LL P ++ TD + + + ++M RCSDKAPTVRS+A ++ LE + S + + ++ P S + + D+ +GE +L +LR+RVRD+K VR+ A+ L ++L
Sbjct: 297 LLQHICAKVVDKSEYRTPAAQSLVQLLGKLPCVQYAAFIAWFYRYSRSPKIPHRIFTLDVVLALLELP------ERETDSAVSPE------------------------------HQKFLKHKFLVQEIMFDRCSDKAPTVRSKALSSFALCLESSV--SKASESILELLSSVFFHQKQTLNPLEPSVEMDVDSNGDTGGSGERCVLSMLRMRVRDEKTNVRKSAIQVLVSIL 491
BLAST of mRNA_P-wetherbeei_contig5788.5.1 vs. uniprot
Match: A0A444V4G2_ACIRT (Condensin-2 complex subunit D3 n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A444V4G2_ACIRT) HSP 1 Score: 62.0 bits (149), Expect = 2.720e-7 Identity = 50/158 (31.65%), Postives = 72/158 (45.57%), Query Frame = 1
Query: 70 LVQHLCTQAPERADVRSRVSSAVLTLLRRLPAGARGRFAVFLQRLSRSPKVPVRGFAVEIASRLLREPWLWEKSDQATDVIGAEDIGETGGGSGSXXXXXXXXXXXXXXXXXXXXXXXXXGQAVALLQVMV-SRCSDKAPTVRSRAAAALCGALEHNT 540
L+QH+C + ++AD R+ + A++ LL +LP F +L SR K+P R FA+++A LL + QA + + E + Q L+QVMV RCSDKAPTVRSRA ++L LE T
Sbjct: 157 LLQHICAKVTDKADYRTYGAQALVKLLSKLPCVEYAAFIKWLYNYSRHTKIPYRVFALDVAMALLEQT-----ERQADEAVPPEQV--------------------------------QFLQHRFLIQVMVFGRCSDKAPTVRSRALSSLAQCLELQT 277
BLAST of mRNA_P-wetherbeei_contig5788.5.1 vs. uniprot
Match: UPI0004F01F6C (condensin-2 complex subunit D3 n=1 Tax=Merops nubicus TaxID=57421 RepID=UPI0004F01F6C) HSP 1 Score: 61.6 bits (148), Expect = 3.750e-7 Identity = 63/243 (25.93%), Postives = 100/243 (41.15%), Query Frame = 1
Query: 70 LVQHLCTQAPERADVRSRVSSAVLTLLRRLPAGARGRFAVFLQRLSRSPKVPVRGFAVEIASRLLREPWLWEKSDQATDVIGAEDIGETGGGSGSXXXXXXXXXXXXXXXXXXXXXXXXXGQAVALLQVMV-SRCSDKAPTVRSRAAAALCGALE------------------HNTPSSPTPTAGFAIAAAXXXXXVPAAIPSLRSAALSLSGGADSAGEAPLLEVLRLRVRDDKAAVRRYAV 741
L+QH+CTQ P++A+ R+ + A++TLL +LP F +L + SR+ K+ R FA+++ V+G D+ E S L+QVMV RCSDKAP VRS+A ++ LE H + T A ++A +P+ ++ L+ S + ++ VLRLR D+K VR+ A+
Sbjct: 334 LLQHICTQVPDKAEYRTYAAQALVTLLNKLPCTEFADFITWLYKYSRNTKIAYRVFALDV-------------------VLGLLDVPERNFDSSLSLDHQKYLKHKF------------------LVQVMVFGRCSDKAPVVRSKALSSFAHCLEMKAAATLESIQELLQTSDHTVLEANTNAASLIVSAEAMSNHPLKTLPTFKTIELTNSSDSAVLDGKEVMAVLRLRTGDEKTNVRKAAL 539 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5788.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5788.5.1 >prot_P-wetherbeei_contig5788.5.1 ID=prot_P-wetherbeei_contig5788.5.1|Name=mRNA_P-wetherbeei_contig5788.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=254bp GRGSCGGARAAQAPSTPFLPMLALVQHLCTQAPERADVRSRVSSAVLTLLback to top mRNA from alignment at P-wetherbeei_contig5788:2867..3628+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig5788.5.1 ID=mRNA_P-wetherbeei_contig5788.5.1|Name=mRNA_P-wetherbeei_contig5788.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=762bp|location=Sequence derived from alignment at P-wetherbeei_contig5788:2867..3628+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig5788:2867..3628+ >mRNA_P-wetherbeei_contig5788.5.1 ID=mRNA_P-wetherbeei_contig5788.5.1|Name=mRNA_P-wetherbeei_contig5788.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=762bp|location=Sequence derived from alignment at P-wetherbeei_contig5788:2867..3628+ (Phaeothamnion wetherbeei SAG_119_79)back to top |