mRNA_P-wetherbeei_contig57863.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57863.1.1
Unique NamemRNA_P-wetherbeei_contig57863.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57863.1.1 vs. uniprot
Match: A0A371B970_9HYPH (Penicillin-binding protein activator n=2 Tax=unclassified Pseudolabrys TaxID=2638514 RepID=A0A371B970_9HYPH)

HSP 1 Score: 284 bits (726), Expect = 4.310e-93
Identity = 142/169 (84.02%), Postives = 157/169 (92.90%), Query Frame = 1
Query:    1 VSAVGQVARQRNIPVIAFSTDASVAARGVYLLSFLPESDVRRIVDYAISRGKRSFAALLPDNAYGAVVEAAFQQEVSRRGGRVVVLEKYPLDPARMGEPIKRVAQAAAQVDSIFIPDGADAVPQVVQALTTAGVNLKRVQLLGTGLWDDPRIFSNKALDGGWFAAPDSA 507
            VSAVG VARQRNIPVIAFSTDASVAARGVYLLSFLPESDV+RIVD+AISRGKRSFAALLPDNAYGAVVEAAFQQEV+RRGGRV+ LEKYPLDPARMGE ++R+AQA+++ D+IFIPDGADAVPQVVQ L    VNLKRVQLLGTGLWD+PRIF  +AL GGW+AAPD+A
Sbjct:  116 VSAVGGVARQRNIPVIAFSTDASVAARGVYLLSFLPESDVKRIVDFAISRGKRSFAALLPDNAYGAVVEAAFQQEVARRGGRVIALEKYPLDPARMGEAVRRIAQASSRADAIFIPDGADAVPQVVQQLAANNVNLKRVQLLGTGLWDEPRIFETQALAGGWYAAPDNA 284          
BLAST of mRNA_P-wetherbeei_contig57863.1.1 vs. uniprot
Match: A0A0Q7TN00_9HYPH (Ethanolamine utilization protein EutM n=2 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7TN00_9HYPH)

HSP 1 Score: 281 bits (718), Expect = 1.410e-91
Identity = 141/169 (83.43%), Postives = 155/169 (91.72%), Query Frame = 1
Query:    1 VSAVGQVARQRNIPVIAFSTDASVAARGVYLLSFLPESDVRRIVDYAISRGKRSFAALLPDNAYGAVVEAAFQQEVSRRGGRVVVLEKYPLDPARMGEPIKRVAQAAAQVDSIFIPDGADAVPQVVQALTTAGVNLKRVQLLGTGLWDDPRIFSNKALDGGWFAAPDSA 507
            VSAVG VAR RNIPVIAFSTDASVA RGVYLLSFLPESDVRRIVD+A+SRGKRSFAALLPDNAYG V+EAAFQQEV+RRGGRVV LEKYPLDPARMGE ++RVAQAA++ D++FIPDGADAVPQVV  L T  VNLKR+QLLGTGLWDDPRIFSN +L GGW+AAPD+A
Sbjct:  139 VSAVGAVARGRNIPVIAFSTDASVATRGVYLLSFLPESDVRRIVDFAVSRGKRSFAALLPDNAYGTVIEAAFQQEVARRGGRVVALEKYPLDPARMGEAVRRVAQAASRADALFIPDGADAVPQVVAQLETNRVNLKRLQLLGTGLWDDPRIFSNASLAGGWYAAPDAA 307          
BLAST of mRNA_P-wetherbeei_contig57863.1.1 vs. uniprot
Match: A0A345ZZ64_9HYPH (Penicillin-binding protein activator n=2 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZZ64_9HYPH)

HSP 1 Score: 275 bits (702), Expect = 5.950e-89
Identity = 139/168 (82.74%), Postives = 151/168 (89.88%), Query Frame = 1
Query:    1 VSAVGQVARQRNIPVIAFSTDASVAARGVYLLSFLPESDVRRIVDYAISRGKRSFAALLPDNAYGAVVEAAFQQEVSRRGGRVVVLEKYPLDPARMGEPIKRVAQAAAQVDSIFIPDGADAVPQVVQALTTAGVNLKRVQLLGTGLWDDPRIFSNKALDGGWFAAPDS 504
            VSAVGQVARQR IPVIAFSTDASVA RGVYLLSFLPESDVRRI++YA+S GKRSFAALLPDNAYG +VEAAFQQEV+RRGGRV+ LEKYPLD ARM EP++RVAQAA+Q D+IFIPDGADAVPQV Q+L  AGV  KRVQLLGTGLWDDPRI SN  L GGWFAAPD+
Sbjct:  152 VSAVGQVARQRGIPVIAFSTDASVATRGVYLLSFLPESDVRRIIEYAVSHGKRSFAALLPDNAYGNLVEAAFQQEVARRGGRVIALEKYPLDAARMAEPVRRVAQAASQADAIFIPDGADAVPQVAQSLAAAGVT-KRVQLLGTGLWDDPRIMSNAQLQGGWFAAPDA 318          
BLAST of mRNA_P-wetherbeei_contig57863.1.1 vs. uniprot
Match: A0A1Q4D9I4_9HYPH (Ethanolamine utilization protein EutM n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4D9I4_9HYPH)

HSP 1 Score: 240 bits (613), Expect = 1.230e-75
Identity = 117/167 (70.06%), Postives = 138/167 (82.63%), Query Frame = 1
Query:    1 VSAVGQVARQRNIPVIAFSTDASVAARGVYLLSFLPESDVRRIVDYAISRGKRSFAALLPDNAYGAVVEAAFQQEVSRRGGRVVVLEKYPLDPARMGEPIKRVAQAAAQVDSIFIPDGADAVPQVVQALTTAGVNLKRVQLLGTGLWDDPRIFSNKALDGGWFAAPD 501
            VSA  QVAR R +PVI FSTD +VA+RGVYLLSFLPESDV RI++YA+S+GKRSFAAL+PDNAYG V EAAFQ  V+RRGGRVV LE+YP DPARM E  +RVAQ A++ D+IFIPDGAD  PQ+V  L  +GV  KRVQLLGTGLWDD R+++N ++ GGWFAAPD
Sbjct:  143 VSATAQVARARGVPVIGFSTDTTVASRGVYLLSFLPESDVNRIIEYAVSQGKRSFAALIPDNAYGGVAEAAFQNAVARRGGRVVALERYPSDPARMAEAARRVAQQASRADAIFIPDGADGAPQIVNTLLASGVT-KRVQLLGTGLWDDQRLYANSSMSGGWFAAPD 308          
BLAST of mRNA_P-wetherbeei_contig57863.1.1 vs. uniprot
Match: A0A537VTW0_9PROT (Penicillin-binding protein activator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537VTW0_9PROT)

HSP 1 Score: 238 bits (606), Expect = 1.110e-74
Identity = 117/168 (69.64%), Postives = 141/168 (83.93%), Query Frame = 1
Query:    1 VSAVGQVARQRNIPVIAFSTDASVAARGVYLLSFLPESDVRRIVDYAISRGKRSFAALLPDNAYGAVVEAAFQQEVSRRGGRVVVLEKYPLDPARMGEPIKRVAQAAAQVDSIFIPDGADAVPQVVQALTTAGVNLKRVQLLGTGLWDDPRIFSNKALDGGWFAAPDS 504
            V+ VG+ AR R +PVIAFSTDA+VAARG+YLLSFLPESDV RI+ YA S+G+RSFAAL+PDNAYG+V EAAF+Q V R GGRVV LE+YPLD A+M  P++ VAQAA+  D+IFIPDGADAVP +VQALT  G++ KRVQLLGTGLW+D +IFS+  LDG W+A PDS
Sbjct:  133 VAPVGRAARARGVPVIAFSTDANVAARGIYLLSFLPESDVDRIIGYAASQGRRSFAALVPDNAYGSVAEAAFKQAVGRGGGRVVALERYPLDKAQMQGPVRNVAQAASGADAIFIPDGADAVPALVQALTANGIDTKRVQLLGTGLWEDAQIFSSPLLDGAWYAGPDS 300          
BLAST of mRNA_P-wetherbeei_contig57863.1.1 vs. uniprot
Match: A0A537PCA7_9PROT (Penicillin-binding protein activator n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537PCA7_9PROT)

HSP 1 Score: 237 bits (604), Expect = 2.220e-74
Identity = 116/168 (69.05%), Postives = 137/168 (81.55%), Query Frame = 1
Query:    1 VSAVGQVARQRNIPVIAFSTDASVAARGVYLLSFLPESDVRRIVDYAISRGKRSFAALLPDNAYGAVVEAAFQQEVSRRGGRVVVLEKYPLDPARMGEPIKRVAQAAAQVDSIFIPDGADAVPQVVQALTTAGVNLKRVQLLGTGLWDDPRIFSNKALDGGWFAAPDS 504
            V+ V + AR R +PVIAFSTD + AARGVYLLSFLPESDV RIV YA S+G+RSFAAL+PDNAYG+V EAAF+Q V R GGRV+ LE+YPLD A+M  P++ VAQAA+  D+IFIPDGADAVP VVQ LT  G++ KRVQLLGTGLW+D +IFSN  LDG W+A PDS
Sbjct:  133 VAPVARAARARGVPVIAFSTDTNAAARGVYLLSFLPESDVERIVSYAASQGRRSFAALVPDNAYGSVTEAAFKQAVGRSGGRVIALERYPLDRAQMQAPVRNVAQAASHADAIFIPDGADAVPSVVQTLTANGIDTKRVQLLGTGLWEDAQIFSNPLLDGAWYAGPDS 300          
BLAST of mRNA_P-wetherbeei_contig57863.1.1 vs. uniprot
Match: A0A537TA40_9PROT (Penicillin-binding protein activator n=2 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A537TA40_9PROT)

HSP 1 Score: 237 bits (604), Expect = 2.220e-74
Identity = 114/168 (67.86%), Postives = 138/168 (82.14%), Query Frame = 1
Query:    1 VSAVGQVARQRNIPVIAFSTDASVAARGVYLLSFLPESDVRRIVDYAISRGKRSFAALLPDNAYGAVVEAAFQQEVSRRGGRVVVLEKYPLDPARMGEPIKRVAQAAAQVDSIFIPDGADAVPQVVQALTTAGVNLKRVQLLGTGLWDDPRIFSNKALDGGWFAAPDS 504
            VS VG+ AR R +PVIAFSTD +VAARGVYLLSFLPE+DV RI+ YA S+G+RSFAAL+PDNAYG+V EAAF+Q V R GGRV+ LE+YPLD  +M  P++ VAQAA+Q D+IF+PDG DAVP +VQ LT  G++ KRVQLLGTGLW+D +IFSN  LDG W+A PDS
Sbjct:  133 VSPVGRAARARGVPVIAFSTDTNVAARGVYLLSFLPEADVDRIIGYAASQGRRSFAALVPDNAYGSVAEAAFKQAVGRAGGRVIALERYPLDRTQMQTPVRNVAQAASQADAIFVPDGTDAVPTIVQTLTANGIDTKRVQLLGTGLWEDAQIFSNPLLDGAWYAGPDS 300          
BLAST of mRNA_P-wetherbeei_contig57863.1.1 vs. uniprot
Match: A0A363TSG2_9BRAD (Ethanolamine utilization protein EutM n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A363TSG2_9BRAD)

HSP 1 Score: 238 bits (606), Expect = 2.270e-74
Identity = 114/169 (67.46%), Postives = 138/169 (81.66%), Query Frame = 1
Query:    1 VSAVGQVARQRNIPVIAFSTDASVAARGVYLLSFLPESDVRRIVDYAISRGKRSFAALLPDNAYGAVVEAAFQQEVSRRGGRVVVLEKYPLDPARMGEPIKRVAQAAAQVDSIFIPDGADAVPQVVQALTTAGVNLKRVQLLGTGLWDDPRIFSNKALDGGWFAAPDSA 507
            V+   Q AR R IP+IAFSTD +VAARGVYLLSFLPESDV R+VDYA +RGKRSFAA +PDNAYG VVEA F+Q V+R+GGRVV +E+YP D  ++  P++R+AQAA Q D++FIPDGADAVP+VVQ L   GVN KRVQL+GTGLWDDPR+  + +L  GWFAAPD+A
Sbjct:  159 VTGAAQAARPRGIPIIAFSTDTNVAARGVYLLSFLPESDVDRVVDYAFARGKRSFAAAIPDNAYGTVVEAEFRQAVARKGGRVVGIERYPPDKVQLQGPVQRIAQAARQADAVFIPDGADAVPEVVQVLVAGGVNPKRVQLIGTGLWDDPRVHGDASLQNGWFAAPDAA 327          
BLAST of mRNA_P-wetherbeei_contig57863.1.1 vs. uniprot
Match: A0A833GFC1_9HYPH (Penicillin-binding protein activator n=1 Tax=Pseudorhodoplanes sp. TaxID=1934341 RepID=A0A833GFC1_9HYPH)

HSP 1 Score: 235 bits (600), Expect = 7.530e-74
Identity = 117/169 (69.23%), Postives = 137/169 (81.07%), Query Frame = 1
Query:    1 VSAVGQVARQRNIPVIAFSTDASVAARGVYLLSFLPESDVRRIVDYAISRGKRSFAALLPDNAYGAVVEAAFQQEVSRRGGRVVVLEKYPLDPARMGEPIKRVAQAAAQVDSIFIPDGADAVPQVVQALTTAGVNLKRVQLLGTGLWDDPRIFSNKALDGGWFAAPDSA 507
            V AVGQ+AR R +PVIAFSTDASVAARGV+LLSFLPESDV R+V YA + GKRSFAAL+ DNAYG+V+EAA ++ VSRRGGR+V LE+Y +D  RM   +K VAQAA Q D+IFI DGAD VP V Q L ++GVN +R QL+GTGLWDDPRIFS  AL GGWF APD+A
Sbjct:  125 VQAVGQIARARGVPVIAFSTDASVAARGVHLLSFLPESDVSRMVGYAFANGKRSFAALVQDNAYGSVIEAALKEAVSRRGGRIVALERYEIDRERMAARVKVVAQAAGQADAIFIADGADTVPMVAQTLVSSGVNTRRTQLIGTGLWDDPRIFSEAALAGGWFPAPDAA 293          
BLAST of mRNA_P-wetherbeei_contig57863.1.1 vs. uniprot
Match: A0A537NLD4_9PROT (Penicillin-binding protein activator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NLD4_9PROT)

HSP 1 Score: 234 bits (597), Expect = 2.190e-73
Identity = 116/169 (68.64%), Postives = 138/169 (81.66%), Query Frame = 1
Query:    1 VSAVGQVARQRNIPVIAFSTDASVAARGVYLLSFLPESDVRRIVDYAISRGKRSFAALLPDNAYGAVVEAAFQQEVSRRGGRVVVLEKYPLDPARMGEPIKRVAQAAAQVDSIFIPDGADAVPQVVQALTTAGVNLKRVQLLGTGLWDDPRIFSNKALDGGWFAAPDSA 507
            V A  Q+AR R +P+IAFSTDA+VAA GVYLLSFLPESDV R+VDYA S GKRSFAALLPDNAYG+VV+A F+Q V+R+GGRVV LE YP D  ++ EP++RVA+AA Q DSIFIPD ADAV  VVQ L   G++ KRVQL+GTGLWDDP+IF++ +L G WFAAPD A
Sbjct:  129 VGAAAQIARARGVPLIAFSTDANVAANGVYLLSFLPESDVDRVVDYATSNGKRSFAALLPDNAYGSVVDAEFRQAVARKGGRVVGLEHYPADRQQIQEPVRRVAEAARQADSIFIPDTADAVTSVVQGLAAGGLDRKRVQLIGTGLWDDPKIFADASLQGAWFAAPDPA 297          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57863.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A371B970_9HYPH4.310e-9384.02Penicillin-binding protein activator n=2 Tax=uncla... [more]
A0A0Q7TN00_9HYPH1.410e-9183.43Ethanolamine utilization protein EutM n=2 Tax=Pseu... [more]
A0A345ZZ64_9HYPH5.950e-8982.74Penicillin-binding protein activator n=2 Tax=Pseud... [more]
A0A1Q4D9I4_9HYPH1.230e-7570.06Ethanolamine utilization protein EutM n=1 Tax=Rhiz... [more]
A0A537VTW0_9PROT1.110e-7469.64Penicillin-binding protein activator n=1 Tax=Alpha... [more]
A0A537PCA7_9PROT2.220e-7469.05Penicillin-binding protein activator n=3 Tax=Alpha... [more]
A0A537TA40_9PROT2.220e-7467.86Penicillin-binding protein activator n=2 Tax=uncla... [more]
A0A363TSG2_9BRAD2.270e-7467.46Ethanolamine utilization protein EutM n=1 Tax=Brad... [more]
A0A833GFC1_9HYPH7.530e-7469.23Penicillin-binding protein activator n=1 Tax=Pseud... [more]
A0A537NLD4_9PROT2.190e-7368.64Penicillin-binding protein activator n=1 Tax=Alpha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57863contigP-wetherbeei_contig57863:1..507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1120792.JAFV01000001_gene2332
Preferred nameMA20_24635
PFAMsPeripla_BP_6
Model size507
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.13e-73
EggNOG OGsCOG0683@1|root,COG0683@2|Bacteria,1QURG@1224|Proteobacteria,2TS62@28211|Alphaproteobacteria,36XVG@31993|Methylocystaceae
DescriptionReceptor family ligand binding region
Cds size507
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186857.5461164-CDS-P-wetherbeei_contig57863:0..5071683186857.5461164-CDS-P-wetherbeei_contig57863:0..507Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57863 1..507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57863.1.1prot_P-wetherbeei_contig57863.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57863 1..507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57863.1.1

>prot_P-wetherbeei_contig57863.1.1 ID=prot_P-wetherbeei_contig57863.1.1|Name=mRNA_P-wetherbeei_contig57863.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
VSAVGQVARQRNIPVIAFSTDASVAARGVYLLSFLPESDVRRIVDYAISR
GKRSFAALLPDNAYGAVVEAAFQQEVSRRGGRVVVLEKYPLDPARMGEPI
KRVAQAAAQVDSIFIPDGADAVPQVVQALTTAGVNLKRVQLLGTGLWDDP
RIFSNKALDGGWFAAPDSA
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mRNA from alignment at P-wetherbeei_contig57863:1..507+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57863.1.1 ID=mRNA_P-wetherbeei_contig57863.1.1|Name=mRNA_P-wetherbeei_contig57863.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig57863:1..507+ (Phaeothamnion wetherbeei SAG_119_79)
GTCAGCGCCGTCGGTCAGGTCGCGCGCCAGCGCAACATTCCGGTCATCGC ATTCTCGACCGACGCCAGCGTCGCCGCGCGCGGTGTCTATCTGTTGAGCT TCCTGCCCGAGTCCGACGTGCGGCGGATCGTCGATTACGCCATCTCGCGC GGCAAGCGTTCGTTCGCGGCGCTGCTGCCGGACAACGCCTACGGCGCGGT GGTCGAAGCGGCCTTCCAGCAGGAGGTTTCTCGCCGCGGCGGCCGTGTCG TCGTGCTGGAGAAATATCCGCTCGATCCGGCGCGCATGGGCGAGCCGATC AAGCGCGTCGCGCAGGCGGCGGCGCAGGTTGACAGCATCTTCATTCCGGA CGGCGCGGACGCGGTGCCGCAAGTGGTGCAGGCGTTGACCACGGCCGGCG TCAACCTCAAGCGCGTGCAGTTGCTCGGCACCGGGCTGTGGGACGATCCG CGCATCTTCTCGAACAAGGCGCTCGACGGTGGCTGGTTTGCCGCGCCCGA CTCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57863:1..507+

>mRNA_P-wetherbeei_contig57863.1.1 ID=mRNA_P-wetherbeei_contig57863.1.1|Name=mRNA_P-wetherbeei_contig57863.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig57863:1..507+ (Phaeothamnion wetherbeei SAG_119_79)
GTCAGCGCCGTCGGTCAGGTCGCGCGCCAGCGCAACATTCCGGTCATCGC
ATTCTCGACCGACGCCAGCGTCGCCGCGCGCGGTGTCTATCTGTTGAGCT
TCCTGCCCGAGTCCGACGTGCGGCGGATCGTCGATTACGCCATCTCGCGC
GGCAAGCGTTCGTTCGCGGCGCTGCTGCCGGACAACGCCTACGGCGCGGT
GGTCGAAGCGGCCTTCCAGCAGGAGGTTTCTCGCCGCGGCGGCCGTGTCG
TCGTGCTGGAGAAATATCCGCTCGATCCGGCGCGCATGGGCGAGCCGATC
AAGCGCGTCGCGCAGGCGGCGGCGCAGGTTGACAGCATCTTCATTCCGGA
CGGCGCGGACGCGGTGCCGCAAGTGGTGCAGGCGTTGACCACGGCCGGCG
TCAACCTCAAGCGCGTGCAGTTGCTCGGCACCGGGCTGTGGGACGATCCG
CGCATCTTCTCGAACAAGGCGCTCGACGGTGGCTGGTTTGCCGCGCCCGA
CTCCGCC
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