mRNA_P-wetherbeei_contig57847.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57847.1.1
Unique NamemRNA_P-wetherbeei_contig57847.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57847.1.1 vs. uniprot
Match: A0A525J3N3_9CAUL (PEP-CTERM sorting domain-containing protein n=1 Tax=Phenylobacterium sp. TaxID=1871053 RepID=A0A525J3N3_9CAUL)

HSP 1 Score: 102 bits (254), Expect = 4.990e-24
Identity = 71/176 (40.34%), Postives = 96/176 (54.55%), Query Frame = 1
Query:   13 AAIAALSFVSVQAKADLITNGGFETGDFTGWT----ANAVSFPMYVDTTTVHSGSFAAQIAGFD--FGPDTLTQSISTANGQAYVLSFWRFQFAGEPTGLDVTWNGNSVFSESFAS--GTNPNGQPYQQFTANVIGTGNDQLVFTSYQNPAFTYLDDVSL---NIAAVPEPSTWAM 507
            A  AA+SFV   A+A ++ NGGFETGD TGWT    A  V    Y D    +SG++   +   D  +   T++Q +S   GQ Y+LS++       P   DVTWNG ++     +S   T PNG    QF  NV GTG D L+F     PA+  LDDV+L   ++  VPEP+TWA+
Sbjct:   15 AVAAAVSFVGASAQAQIV-NGGFETGDDTGWTIVGDATGVVGAGY-DAENPNSGNYFMALGDTDGAYPYGTVSQVVSDTAGQNYILSYYLMSDGALPNYDDVTWNGVTLAGSVVSSLPDTRPNGYTLYQF--NVTGTGADLLLFHEQNVPAYNALDDVALTPGSLGGVPEPTTWAL 186          
BLAST of mRNA_P-wetherbeei_contig57847.1.1 vs. uniprot
Match: A0A1M2ZJP3_9SPHN (Uncharacterized protein n=1 Tax=Sphingomonas sp. 66-10 TaxID=1895848 RepID=A0A1M2ZJP3_9SPHN)

HSP 1 Score: 94.0 bits (232), Expect = 5.700e-21
Identity = 62/167 (37.13%), Postives = 93/167 (55.69%), Query Frame = 1
Query:   16 AIAALSFVSVQAKADLITNGGFETGDFTGWTANAVSFPMYVDTTTVHSGSFAAQIAGFDFGPDTLTQSISTANGQAYVLSFWRFQFAGEPTGLDVTWNGNSVFSESFASGTNPNGQPYQQFTANVIGTGNDQLV-FTSYQNPAFTYLDDVSLNIAA--VPEPSTWAM 507
            A+A  +  +    A+L+TNGGFETG+F+GWT    +    VDT + HSG++ A          TL+Q ++T  GQ Y +SFW    +G PT       G++V  ++F   TN N   Y  F+      G+  L+ FT  Q+P++ ++DD+S+   A  VPEP+TWAM
Sbjct:    3 ALALAAAATPSNAAELVTNGGFETGNFSGWTLGGNTGFTGVDTASAHSGTYGAYFGAVG-STGTLSQLLNTVAGQTYTVSFW-LSNSGSPTDSFEASIGDTVL-QTF---TNVNAFQYFNFSFTTPVNGSPSLLKFTFRQDPSYWHIDDISVQGLAGGVPEPTTWAM 163          
BLAST of mRNA_P-wetherbeei_contig57847.1.1 vs. uniprot
Match: A0A537PVN1_9PROT (PEP-CTERM sorting domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537PVN1_9PROT)

HSP 1 Score: 91.7 bits (226), Expect = 8.480e-20
Identity = 69/187 (36.90%), Postives = 96/187 (51.34%), Query Frame = 1
Query:    7 AVAAIAALSFVSVQAKA-DLITNGGFETGDFTGWTANAVSFPMYVDTTTVHSGSFAAQIAGF--------DFGPDTLTQSISTANGQAYVLSFWRFQFAGEPTGLDVTWNGNSVFSESFASGTNPNG----QPYQQFTANVIGTGNDQLVFT-------SYQNPAFTYLDDVSLNIAAVPEPSTWAM 507
            A AAI AL     QA A +L+TNGGFE+G F+GWT N V     V  T   +  +AAQ   +             TL+Q  +  +GQ   +SFW       P+    +++GN +  + F SGT  N     + + ++T +V+ TGND L FT       +  +PA   LD VS+  +AVPEPSTWAM
Sbjct:    8 ACAAIIALGSGVTQAGAVELLTNGGFESGSFSGWTQNPVQTQDAVLATGAPAAEYAAQSGTYYAQLSYISGQSTATLSQGFADTSGQTLTVSFWLTADGKNPSRFAASFDGNLL--QDFTSGTGNNAVVAARGWTEYTYSVLATGNDTLTFTYDDGGSLNADHPANLGLDTVSV-ASAVPEPSTWAM 191          
BLAST of mRNA_P-wetherbeei_contig57847.1.1 vs. uniprot
Match: A0A1M2ZDJ5_9SPHN (Uncharacterized protein n=1 Tax=Sphingomonas sp. 66-10 TaxID=1895848 RepID=A0A1M2ZDJ5_9SPHN)

HSP 1 Score: 89.4 bits (220), Expect = 3.460e-19
Identity = 61/172 (35.47%), Postives = 93/172 (54.07%), Query Frame = 1
Query:    1 ALAVAAIAALSFVSVQAKADLITNGGFETGDFTGWTANAVSFPMYVDTTTVHSGSFAAQIAGFDFGPDTLTQSISTANGQAYVLSFWRFQFAGEPTGLDVTWNGNSVFSESFASGTNPNGQPYQQFTANV-IGTGNDQLVFTSYQNPAFTYLDDVSLNIAA--VPEPSTWAM 507
            ALA+AAIA  S+      A+L+TNGGFETG+F+GWT    +    V ++  HSG++ A   G      TL+Q ++T  G  Y +S+W     G       +  GN +  ++F+   N N   Y  F+    + +    L FT  Q+P++ ++DD+S+   A  VPEP+TWAM
Sbjct:    3 ALALAAIATPSYA-----AELVTNGGFETGNFSGWTLGGNTGFTGVSSSAAHSGNYGASF-GQVGSTGTLSQLLNTVAGHTYTVSYWLANLGGPTDSFSASIGGNVL--QTFS---NSNAFQYFNFSFTAPVNSSPSLLQFTFRQDPSYWHIDDISVQGLAGGVPEPATWAM 163          
BLAST of mRNA_P-wetherbeei_contig57847.1.1 vs. uniprot
Match: A0A520C3I3_9BURK (PEP-CTERM sorting domain-containing protein n=1 Tax=Rubrivivax sp. TaxID=50259 RepID=A0A520C3I3_9BURK)

HSP 1 Score: 89.0 bits (219), Expect = 8.580e-19
Identity = 64/167 (38.32%), Postives = 81/167 (48.50%), Query Frame = 1
Query:   16 AIAALSFVSVQAKADLITNGGFETGDFTGWTA-NAVSFPMYVDTTTVHSGSFAAQIAGFDFGPDTLTQSISTANGQAYVLSFWRFQFAGEPTGLDVTWN-GNSVFSESFASGTNPNGQPYQQFTANVIGTGN-DQLVFTSYQNPAFTYLDDVSLN---IAAVPEPST 498
            A+ ALS   V A    + NGGFE GDFTGWT      F        VHSG F A       GP  + Q+++T  G  Y +SFW    +G P   +  W+ G +  S      T     PYQQ+T  +  TG    L FT +  PAF YLDDVS++     +VPEP T
Sbjct:   34 ALCALSAGIVHAAP--VVNGGFEAGDFTGWTQFGDTDFSSVGAGNAVHSGDFGANFGSLS-GPGGIFQTLATQAGATYDVSFWLRAESGTPNSFEFNWDDGAAEISLIDMPAT-----PYQQYTVALTATGAATDLRFTFFHEPAFFYLDDVSVSERTTRSVPEPGT 192          
BLAST of mRNA_P-wetherbeei_contig57847.1.1 vs. uniprot
Match: A0A7C5F422_9BACT (PEP-CTERM sorting domain-containing protein n=1 Tax=Candidatus Solibacter sp. TaxID=2068625 RepID=A0A7C5F422_9BACT)

HSP 1 Score: 88.2 bits (217), Expect = 1.050e-18
Identity = 58/161 (36.02%), Postives = 88/161 (54.66%), Query Frame = 1
Query:   37 VSVQAKADLITNGGFETGDFTGWTANAVSFPMYVDTTTVHSGSFAAQIAGFDFGPDTLTQSISTANGQAYVLSFWRFQFAGEPTGLDVTWNGNSVFSESFASGTNPNGQPYQQFTANVIGTGNDQLVFTS--YQNPAFTYLDDVSL--NIAAVPEPSTWAM 507
            VS  A+A ++TNGGFETGDFTGWT +  +   Y+ T   H+GS+ A   G  +G   ++Q++ST  G  Y LSFW     G P   +V W+G  V++      T+  G  + Q T N +   N   V     Y   ++T++DD+ +  + A +PEPST+ +
Sbjct:   22 VSFAARAGMVTNGGFETGDFTGWTQSGDTTFTYIGT-HAHTGSYGAHF-GPIYGYGYISQTLSTIPGTYYDLSFWEANDRGVPA--EVWWDGVLVYNS-----TSSWGDYWTQITVNSLLATNSSTVLRLGFYNGISYTHVDDIDVVPSGAQIPEPSTFLL 173          
BLAST of mRNA_P-wetherbeei_contig57847.1.1 vs. uniprot
Match: A0A8J3E247_9PROT (PEP-CTERM domain-containing protein n=1 Tax=Aliidongia dinghuensis TaxID=1867774 RepID=A0A8J3E247_9PROT)

HSP 1 Score: 86.7 bits (213), Expect = 4.900e-18
Identity = 69/178 (38.76%), Postives = 98/178 (55.06%), Query Frame = 1
Query:   13 AAIAALSFVSVQAKADLITNGGFETGDFTGWT-------ANAVSFPMYVDTTTVHSGSFAAQIAGFDFGPD-TLTQSISTANGQAYVLSFWRFQFAGEPTGLDVTWNGNSVFSESFASGTNPNGQPYQQFTANVIGTGNDQ-LVFTSYQNPAFTYLDDVSL----NIAAVPEPSTWAM 507
            AA  ALS  S  AKADLITNGGFETGDFTGW         +  SFP+       +SG+FAA++     G D TL+Q+I+T  G  Y LS++     G+ T  D + + + +  +S A+ + P  Q + Q+T +V        L+F    +P+F  LDDVSL       +VPEP++ A+
Sbjct:   10 AATVALSIAS-PAKADLITNGGFETGDFTGWIHGGNLGDTSVGSFPI-----APNSGNFAAELG--PIGSDGTLSQTITTVVGDVYQLSYFHIYALGDNTPDDWSVSFDGMLLQSEANVSTP--QTWTQYTFDVTAVDTSATLLFAFRDDPSFQGLDDVSLVDLGPATSVPEPASLAL 177          
BLAST of mRNA_P-wetherbeei_contig57847.1.1 vs. uniprot
Match: UPI00198C9FB0 (PEP-CTERM sorting domain-containing protein n=1 Tax=Ferruginibacter sp. TaxID=1940288 RepID=UPI00198C9FB0)

HSP 1 Score: 85.5 bits (210), Expect = 9.800e-18
Identity = 58/166 (34.94%), Postives = 80/166 (48.19%), Query Frame = 1
Query:   16 AIAALSFVSVQAKADLITNGGFETGDFTGW--TANAVSFPMYVDTTTVHSGSFAAQIAGFDFGPDTLTQSISTANGQAYVLSFWRFQFAGEPTGLDVTWNGNSVFSESFASGTNPNGQPYQQFTANVIGTGNDQLVFTSYQNPAFTYLDDVSLNIAAVPEPSTWAM 507
            A+ A SF +     + + NGGFETGDF+GW  +ANA S    +  T   SG + A++        T+ Q+I+T     Y LS+W     G P   DV WNG  +     +   N     Y  +   V GTG D L F    +P++  LD VSL    VPEP + A+
Sbjct:   11 ALIAASFCAHAGTVNEVVNGGFETGDFSGWAVSANATSVAKGIPFT--ESGFYGARLGNVG-SLGTIAQTINTTGQATYTLSYWFSSDGGRPNYFDVLWNGVQIVGSEVS---NAPAFGYTNYKFTVAGTGLDTLTFQERNDPSYQGLDTVSL--INVPEPGSLAL 168          
BLAST of mRNA_P-wetherbeei_contig57847.1.1 vs. uniprot
Match: A0A5K7XCH1_9BACT (Uncharacterized protein n=1 Tax=Lacipirellula parvula TaxID=2650471 RepID=A0A5K7XCH1_9BACT)

HSP 1 Score: 81.6 bits (200), Expect = 3.280e-16
Identity = 55/170 (32.35%), Postives = 85/170 (50.00%), Query Frame = 1
Query:    4 LAVAAIAA-LSFVSVQAKADLITNGGFETGDFTGWTANAVSFPMY-VDTTTVHSGSFAAQIAGFDFGPDTLTQSISTANGQAYVLSFWRFQFAGEPTGLDVTWNGNSVFSESFASGTNPNGQPYQQFT---ANVIGTGN-DQLVFTSYQNPAFTYLDDVSLNIAAVPEPS 495
            LA+AA+ A L+ ++     +L+TNGGFET DF+GWT N     ++ +     HSG +A  +A ++   D + Q++ T NGQ+Y + FW          + V W GN V  +       P   P  Q+T   A+V  T +  +L    +  P     DD+S  +  +PEPS
Sbjct:    7 LALAALVAWLALLNPAHAVNLVTNGGFETSDFSGWTLNGTPSSLFNIFDFEPHSGQYAMFVADYEADHDQIYQTVPTINGQSYKIEFWLRNIGLGNDAVQVFWEGNLVLEQK------PVLAPVNQWTLYKASVTATADGSELRLGGFDEPQVINFDDIS--VTPIPEPS 168          
BLAST of mRNA_P-wetherbeei_contig57847.1.1 vs. uniprot
Match: A0A7G5IH90_9SPHN (PEPxxWA-CTERM sorting domain-containing protein n=1 Tax=Sandaracinobacter sp. M6 TaxID=2759707 RepID=A0A7G5IH90_9SPHN)

HSP 1 Score: 81.6 bits (200), Expect = 5.110e-16
Identity = 56/155 (36.13%), Postives = 72/155 (46.45%), Query Frame = 1
Query:   58 DLITNGGFETGDFTGWT-ANAVSFPMYVDTTT---VHSGSFAAQIAGFDFGPDTLTQSISTANGQAYVLSFWRFQFAGEPTGLDVTWNGNSVFSESFASGTNPNGQPYQQFTANVIG-TGNDQLVFTSYQNPAFTYLDDVSLNIAAVPEPSTWAM 507
            +L++NG FETGDF+GW      SF    D         G F A     D G   + Q I+T  G  Y LSF      G P    V W+G  V  +      +     YQ FT  +   T + +L F  Y  P+F  LD++SL  A VPEP+TWAM
Sbjct:   44 NLVSNGSFETGDFSGWEQVGDTSFTFVTDELAGGGPTDGDFHAAFGPLDPGGGGIVQLINTTAGGVYTLSFDLANLGGPPNAYGVFWDGGFVSIDFDLDSFD-----YQTFTTTLTASTSSTELGFIFYNEPSFFLLDNISL--AVVPEPATWAM 191          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57847.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A525J3N3_9CAUL4.990e-2440.34PEP-CTERM sorting domain-containing protein n=1 Ta... [more]
A0A1M2ZJP3_9SPHN5.700e-2137.13Uncharacterized protein n=1 Tax=Sphingomonas sp. 6... [more]
A0A537PVN1_9PROT8.480e-2036.90PEP-CTERM sorting domain-containing protein n=1 Ta... [more]
A0A1M2ZDJ5_9SPHN3.460e-1935.47Uncharacterized protein n=1 Tax=Sphingomonas sp. 6... [more]
A0A520C3I3_9BURK8.580e-1938.32PEP-CTERM sorting domain-containing protein n=1 Ta... [more]
A0A7C5F422_9BACT1.050e-1836.02PEP-CTERM sorting domain-containing protein n=1 Ta... [more]
A0A8J3E247_9PROT4.900e-1838.76PEP-CTERM domain-containing protein n=1 Tax=Aliido... [more]
UPI00198C9FB09.800e-1834.94PEP-CTERM sorting domain-containing protein n=1 Ta... [more]
A0A5K7XCH1_9BACT3.280e-1632.35Uncharacterized protein n=1 Tax=Lacipirellula parv... [more]
A0A7G5IH90_9SPHN5.110e-1636.13PEPxxWA-CTERM sorting domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57847contigP-wetherbeei_contig57847:1..507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog745310.G432_01730
PFAMsVPEP
Model size507
Max annot lvl204457|Sphingomonadales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue7.04e-16
EggNOG OGs2EHXI@1|root,33BP1@2|Bacteria,1NH9Y@1224|Proteobacteria,2VFM2@28211|Alphaproteobacteria,2KDX5@204457|Sphingomonadales
DescriptionPEP-CTERM motif
Cds size507
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186857.2532523-CDS-P-wetherbeei_contig57847:0..5071683186857.2532523-CDS-P-wetherbeei_contig57847:0..507Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57847 1..507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57847.1.1prot_P-wetherbeei_contig57847.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57847 1..507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57847.1.1

>prot_P-wetherbeei_contig57847.1.1 ID=prot_P-wetherbeei_contig57847.1.1|Name=mRNA_P-wetherbeei_contig57847.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
ALAVAAIAALSFVSVQAKADLITNGGFETGDFTGWTANAVSFPMYVDTTT
VHSGSFAAQIAGFDFGPDTLTQSISTANGQAYVLSFWRFQFAGEPTGLDV
TWNGNSVFSESFASGTNPNGQPYQQFTANVIGTGNDQLVFTSYQNPAFTY
LDDVSLNIAAVPEPSTWAM
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mRNA from alignment at P-wetherbeei_contig57847:1..507+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57847.1.1 ID=mRNA_P-wetherbeei_contig57847.1.1|Name=mRNA_P-wetherbeei_contig57847.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig57847:1..507+ (Phaeothamnion wetherbeei SAG_119_79)
GCCTTGGCCGTGGCGGCTATCGCAGCCCTTTCCTTTGTTTCCGTTCAGGC AAAAGCCGACTTGATCACGAACGGCGGGTTCGAAACGGGAGATTTCACGG GCTGGACCGCTAACGCGGTATCGTTCCCGATGTATGTCGACACAACCACC GTTCATAGTGGTTCATTTGCGGCGCAAATCGCCGGGTTTGACTTTGGCCC GGATACACTTACACAATCCATTTCGACCGCTAATGGTCAGGCCTATGTGT TGAGCTTTTGGCGATTTCAATTTGCGGGAGAGCCTACGGGGTTGGACGTG ACCTGGAACGGCAACTCTGTTTTCTCGGAGAGCTTTGCTTCGGGCACGAA CCCGAATGGCCAGCCCTATCAGCAATTCACTGCGAATGTGATCGGAACTG GAAACGATCAACTCGTGTTCACGTCATATCAGAATCCCGCATTCACCTAT CTCGACGATGTTTCTCTGAACATCGCCGCCGTCCCCGAACCCTCGACCTG GGCGATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57847:1..507+

>mRNA_P-wetherbeei_contig57847.1.1 ID=mRNA_P-wetherbeei_contig57847.1.1|Name=mRNA_P-wetherbeei_contig57847.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig57847:1..507+ (Phaeothamnion wetherbeei SAG_119_79)
GCCTTGGCCGTGGCGGCTATCGCAGCCCTTTCCTTTGTTTCCGTTCAGGC
AAAAGCCGACTTGATCACGAACGGCGGGTTCGAAACGGGAGATTTCACGG
GCTGGACCGCTAACGCGGTATCGTTCCCGATGTATGTCGACACAACCACC
GTTCATAGTGGTTCATTTGCGGCGCAAATCGCCGGGTTTGACTTTGGCCC
GGATACACTTACACAATCCATTTCGACCGCTAATGGTCAGGCCTATGTGT
TGAGCTTTTGGCGATTTCAATTTGCGGGAGAGCCTACGGGGTTGGACGTG
ACCTGGAACGGCAACTCTGTTTTCTCGGAGAGCTTTGCTTCGGGCACGAA
CCCGAATGGCCAGCCCTATCAGCAATTCACTGCGAATGTGATCGGAACTG
GAAACGATCAACTCGTGTTCACGTCATATCAGAATCCCGCATTCACCTAT
CTCGACGATGTTTCTCTGAACATCGCCGCCGTCCCCGAACCCTCGACCTG
GGCGATG
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