mRNA_P-wetherbeei_contig57838.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57838.1.1
Unique NamemRNA_P-wetherbeei_contig57838.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57838.1.1 vs. uniprot
Match: A0A3M1XH99_9CHLR (Universal stress protein n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A3M1XH99_9CHLR)

HSP 1 Score: 84.3 bits (207), Expect = 4.750e-18
Identity = 55/134 (41.04%), Postives = 75/134 (55.97%), Query Frame = 1
Query:    1 LDGSPAAEKALPFAEELAKAHGGQLHLVSVCSWASTSFPAEAGYYISPELIEAQLKSQDEYLTKVQLDLHERGLEAKTYGLEGNALQRLLEFAESHKVDLIVLTSHGRTAFKRFLLGSVAENVARLAPCPVLLV 402
            LDGS  +E+ALP A ELA     ++ L  V        P    + ++  + EA   +  EYL ++   L   GL+A +  L+G     LL+FA+S  VDLIV+++HGRT   R L+GSVAE V   A CPVLLV
Sbjct:    9 LDGSSFSEEALPHARELALCGDAEIILARVDE---PYEPPPGAFVVATAIPEAVQLTAGEYLEQIVSRLQLAGLKASSAVLDGKVPDALLKFAKSEGVDLIVMSTHGRTGLSRLLMGSVAEQVVHGAHCPVLLV 139          
BLAST of mRNA_P-wetherbeei_contig57838.1.1 vs. uniprot
Match: A0A7Z9XMV8_9CHLR (Universal stress protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7Z9XMV8_9CHLR)

HSP 1 Score: 85.1 bits (209), Expect = 6.320e-18
Identity = 54/138 (39.13%), Postives = 78/138 (56.52%), Query Frame = 1
Query:    1 LDGSPAAEKALPFAEELAKAHGGQLHLVSVCSWASTSFPAEAGYYISPELIEAQLKSQDEYLTKVQLDLHERGLEAKTYGLEGNAL-QRLLEFAESHKVDLIVLTSHGRTAFKRFLLGSVAENVARLAPCPVLLVGHE 411
            LDGS  AE+A+P+A EL K    ++ L  V          +A   +     +  L+   +YL  +   L E G+   T  +E NA+ + L+E+A+ H +DLIV+T+HGR+   R + GSVAE+V R APCPVLLV  E
Sbjct:   38 LDGSKLAEQAIPYAAELCKG-ATEVTLFQVVHLPLPLVAPDASMAVPMPDPKQLLQDALDYLNGIAEKLREEGVRVVTDAVERNAVAEALVEYAQEHDIDLIVMTTHGRSGLSRLIFGSVAESVVRHAPCPVLLVRAE 174          
BLAST of mRNA_P-wetherbeei_contig57838.1.1 vs. uniprot
Match: A0A7C3JB31_9CHLR (Universal stress protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C3JB31_9CHLR)

HSP 1 Score: 84.3 bits (207), Expect = 7.740e-18
Identity = 57/138 (41.30%), Postives = 77/138 (55.80%), Query Frame = 1
Query:    1 LDGSPAAEKALPFAEELAKAHGGQLHLVSVCSWAS-TSFPAEAGYYISPELIEAQLKSQDE---YLTKVQLDLHERGLEAKTYGLEGNALQRLLEFAESHKVDLIVLTSHGRTAFKRFLLGSVAENVARLAPCPVLLV 402
            LDGSP +EKALP A  LAK    Q+ LV    +   T          +  L EA   S  E   YL   Q +L  +GL  +   L+ +  + +LE A  H++DLIV+++HGR   KR+ +GS+A+ VAR APCPVLLV
Sbjct:   15 LDGSPLSEKALPLAMSLAKKFDSQIILVRALDFLHPTVLAPHLTTATAQALTEAHEHSYLEAKNYLETQQQELESQGLRVQIILLDISPAEGILEAAIHHQIDLIVMSTHGRGGLKRWAMGSIADKVARHAPCPVLLV 152          
BLAST of mRNA_P-wetherbeei_contig57838.1.1 vs. uniprot
Match: A0A142VAS6_9CHLR (Universal stress protein n=8 Tax=root TaxID=1 RepID=A0A142VAS6_9CHLR)

HSP 1 Score: 83.2 bits (204), Expect = 1.370e-17
Identity = 52/134 (38.81%), Postives = 79/134 (58.96%), Query Frame = 1
Query:    1 LDGSPAAEKALPFAEELAKAHGGQLHLVSVCSWASTSFPAEAGYYISPELIEAQLKSQDEYLTKVQLDLHERGLEAKTYGLEGNALQRLLEFAESHKVDLIVLTSHGRTAFKRFLLGSVAENVARLAPCPVLLV 402
            LDGS AAE  LP A+ LA + G Q+ L++V S  +  F A +   I+   +  Q+ S  EY+ +V+  L   G + +    EG A + +L  AE  KVD+I +++HGR+   R+LLGSVAE V R +  P++L+
Sbjct:    9 LDGSKAAEGVLPHAKALAFSEGSQILLLNVVSNPAVEF-AFSDPAIAAISVNEQVDSGKEYMVRVENKLKGEGYDVRVLLREGGAAEVILSVAEEEKVDVIAMSTHGRSGAARWLLGSVAERVVRHSHIPIMLI 141          
BLAST of mRNA_P-wetherbeei_contig57838.1.1 vs. uniprot
Match: A0A7C3VR48_9BACT (Universal stress protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C3VR48_9BACT)

HSP 1 Score: 83.2 bits (204), Expect = 1.670e-17
Identity = 47/136 (34.56%), Postives = 82/136 (60.29%), Query Frame = 1
Query:    1 LDGSPAAEKALPFAEELAKAHGGQLHLVSVCSWAST-SFPAEAGYYISPEL-IEAQLKSQDEYLTKVQLDLHERGLEAKTYGLEGNALQRLLEFAESHKVDLIVLTSHGRTAFKRFLLGSVAENVARLAPCPVLLV 402
            LDGS  AEKA+P+A ELA+  G ++ L+S+       S P   G  +S  + ++ ++ +   YL +++  L   G+  +    +G+A  ++ ++A+    DLIV+++HGR+ F+R++ GSVA+ V R A  PVLL+
Sbjct:    9 LDGSELAEKAIPYAAELARKFGSRITLLSIIEPVVVYSQPGVVGPVVSVAVEVDQEIITMGNYLARIEESLQAEGINTRKVVRQGDAATQICDYAKEINADLIVMSTHGRSGFRRWVYGSVADKVLRGAEVPVLLI 144          
BLAST of mRNA_P-wetherbeei_contig57838.1.1 vs. uniprot
Match: A0A349M615_9CHLR (Uncharacterized protein n=4 Tax=Ktedonobacter sp. TaxID=1932716 RepID=A0A349M615_9CHLR)

HSP 1 Score: 85.9 bits (211), Expect = 3.820e-17
Identity = 57/136 (41.91%), Postives = 77/136 (56.62%), Query Frame = 1
Query:    1 LDGSPAAEKALPFAEELAKAHGGQLHLVSVCSWASTSFPAEAGYYISPE--LIEAQLKSQDEYLTKVQLDLHERGLEAKTYGLEGNALQRLLEFAESHKVDLIVLTSHGRTAFKRFLLGSVAENVARLAPCPVLLV 402
            LDGSP AE+ALP A  LA+A GG + L+ V      + P E   Y++    LIE  +     YLT +       G+  +   + G+ +  L   A+S   DLIVL SHG T FKR++LGSVA+ VAR AP PVL++
Sbjct:   10 LDGSPRAERALPVAARLARASGGSIVLLQV-----VNPPVEYEMYVAQPSVLIEQAITQAIHYLTCLAQSDELEGIGIQIEVMSGSVVPTLFTSAQSFGADLIVLCSHGYTGFKRWVLGSVADRVARHAPAPVLVL 140          
BLAST of mRNA_P-wetherbeei_contig57838.1.1 vs. uniprot
Match: A0A4R5M8L3_9BURK (Universal stress protein n=2 Tax=Paraburkholderia TaxID=1822464 RepID=A0A4R5M8L3_9BURK)

HSP 1 Score: 81.3 bits (199), Expect = 8.270e-17
Identity = 51/136 (37.50%), Postives = 78/136 (57.35%), Query Frame = 1
Query:    4 DGSPAAEKALPFAEELAKAHGGQLHLVSVC---SWASTSFPAEAGYYISPELIEAQLKSQDEYLTKVQLDLHERGLEAKTYGLEGNALQRLLEFAESHKVDLIVLTSHGRTAFKRFLLGSVAENVARLAPCPVLLV 402
            DGS +AE+A+ FA  LA+  G +LH+++V     W   +       Y  PEL+EA+     E +T+++  L   G+  +   + G+  + L+ +AE HKVD +V+   GRTAF R+LLGS+A  V   APC V +V
Sbjct:    9 DGSVSAEEAVRFARNLAEKEGARLHILTVARLPDWGKLA-------YERPELLEAEKLHCQELITELKGKLGLSGVTVQYELIVGHPAKELVLYAERHKVDHVVVGHRGRTAFDRWLLGSIARQVIAYAPCSVTIV 137          
BLAST of mRNA_P-wetherbeei_contig57838.1.1 vs. uniprot
Match: A0A0W1R4B4_9EURY (Universal stress protein UspA n=3 Tax=Haloferax TaxID=2251 RepID=A0A0W1R4B4_9EURY)

HSP 1 Score: 80.9 bits (198), Expect = 9.820e-17
Identity = 49/134 (36.57%), Postives = 74/134 (55.22%), Query Frame = 1
Query:    1 LDGSPAAEKALPFAEELAKAHGGQLHLVSVCSWASTSFPAEAGYYISPELIEAQLKSQDEYLTKVQLDLHERGLEAKTYGLEGNALQRLLEFAESHKVDLIVLTSHGRTAFKRFLLGSVAENVARLAPCPVLLV 402
            +DGSPA E+A+P    LA+ +G  +H++ V      S     G  +     E Q +  DE++ + +    ERG+ A    L G   + ++++A+ H VD+IV+ +HGR   +R LLGSV E V R AP PVL V
Sbjct:    9 VDGSPAGEQAIPHVFGLAEQYGSTVHVLFVADDTRDSVSVMGGSILDTLEQEGQ-RVVDEFVARAE----ERGISATGDVLRGTPYEAIIDYADEHDVDVIVMATHGRRGVERVLLGSVTERVVRTAPVPVLTV 137          
BLAST of mRNA_P-wetherbeei_contig57838.1.1 vs. uniprot
Match: A0A1F9A7P7_9DELT (Usp domain-containing protein n=1 Tax=Deltaproteobacteria bacterium RBG_13_52_11 TaxID=1797829 RepID=A0A1F9A7P7_9DELT)

HSP 1 Score: 80.9 bits (198), Expect = 1.140e-16
Identity = 52/137 (37.96%), Postives = 79/137 (57.66%), Query Frame = 1
Query:    1 LDGSPAAEKALPFAEELAKAHGGQ---LHLVSVCSWASTSFPAEAGYYISPELIEAQLKSQDEYLTKVQLDLHERGLEAKTYGLEGNALQRLLEFAESHKVDLIVLTSHGRTAFKRFLLGSVAENVARLAPCPVLLV 402
            LDGS  +E  LP  E+LA A G     LH+V + +++ +  P      I+    EA  K  + YL  ++  L ++GL  +++ L+GN  Q +L+  +   VDLI +++HGR+   R+LLGSVAE V R A  P+LLV
Sbjct:   11 LDGSATSEAILPEIEKLASAFGSSISLLHVVPILTFSGSMEPIVQYETIT----EALTKEGEAYLRTIEKRLKDKGLTVESHLLQGNEAQLILQHGDRKDVDLIAMSTHGRSGVSRWLLGSVAEKVIRHATKPILLV 143          
BLAST of mRNA_P-wetherbeei_contig57838.1.1 vs. uniprot
Match: A0A1W9UBX2_9CHLR (Usp domain-containing protein n=1 Tax=Anaerolineaceae bacterium 4572_32.1 TaxID=1971623 RepID=A0A1W9UBX2_9CHLR)

HSP 1 Score: 80.9 bits (198), Expect = 1.220e-16
Identity = 53/139 (38.13%), Postives = 78/139 (56.12%), Query Frame = 1
Query:    1 LDGSPAAEKALPFAEELAKAHGGQLHLVSVCSWASTSFPAEAGYYISPELIEAQLKSQD-----EYLTKVQLDLHERGLEAKTYGLEGNALQRLLEFAESHKVDLIVLTSHGRTAFKRFLLGSVAENVARLAPCPVLLV 402
            LDGS  AE+ALP A   A+  G +L L+ V        P      ++P+    Q ++       EYL +V   + E G+   T  +EG   +++LEFAE++K+DLIVL++ GR+   R+L+G VA+ V R A  PVLLV
Sbjct:    9 LDGSDLAERALPHAVAQAERFGAELILLRVLE------PIVPTGTLAPQSANRQAETLTGAWAAEYLERVAAGVREHGVSVSTVAIEGRPRKKILEFAETNKIDLIVLSTRGRSGPSRWLMGGVADRVVRGANVPVLLV 141          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57838.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3M1XH99_9CHLR4.750e-1841.04Universal stress protein n=2 Tax=Chloroflexi TaxID... [more]
A0A7Z9XMV8_9CHLR6.320e-1839.13Universal stress protein n=1 Tax=Anaerolineae bact... [more]
A0A7C3JB31_9CHLR7.740e-1841.30Universal stress protein n=1 Tax=Anaerolineae bact... [more]
A0A142VAS6_9CHLR1.370e-1738.81Universal stress protein n=8 Tax=root TaxID=1 RepI... [more]
A0A7C3VR48_9BACT1.670e-1734.56Universal stress protein n=1 Tax=Armatimonadetes b... [more]
A0A349M615_9CHLR3.820e-1741.91Uncharacterized protein n=4 Tax=Ktedonobacter sp. ... [more]
A0A4R5M8L3_9BURK8.270e-1737.50Universal stress protein n=2 Tax=Paraburkholderia ... [more]
A0A0W1R4B4_9EURY9.820e-1736.57Universal stress protein UspA n=3 Tax=Haloferax Ta... [more]
A0A1F9A7P7_9DELT1.140e-1637.96Usp domain-containing protein n=1 Tax=Deltaproteob... [more]
A0A1W9UBX2_9CHLR1.220e-1638.13Usp domain-containing protein n=1 Tax=Anaerolineac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57838contigP-wetherbeei_contig57838:80..508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog479434.Sthe_2289
PFAMsUsp
Model size429
Max annot lvl189775|Thermomicrobia
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.02e-16
EggNOG OGsCOG0589@1|root,COG0589@2|Bacteria,2G768@200795|Chloroflexi,27Y8A@189775|Thermomicrobia
DescriptionBelongs to the universal stress protein A family
Cds size429
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186857.1526651-CDS-P-wetherbeei_contig57838:79..5081683186857.1526651-CDS-P-wetherbeei_contig57838:79..508Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57838 80..508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57838.1.1prot_P-wetherbeei_contig57838.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57838 80..508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57838.1.1

>prot_P-wetherbeei_contig57838.1.1 ID=prot_P-wetherbeei_contig57838.1.1|Name=mRNA_P-wetherbeei_contig57838.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=143bp
LDGSPAAEKALPFAEELAKAHGGQLHLVSVCSWASTSFPAEAGYYISPEL
IEAQLKSQDEYLTKVQLDLHERGLEAKTYGLEGNALQRLLEFAESHKVDL
IVLTSHGRTAFKRFLLGSVAENVARLAPCPVLLVGHESFANAK
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mRNA from alignment at P-wetherbeei_contig57838:80..508-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57838.1.1 ID=mRNA_P-wetherbeei_contig57838.1.1|Name=mRNA_P-wetherbeei_contig57838.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig57838:80..508- (Phaeothamnion wetherbeei SAG_119_79)
TTAGATGGCTCTCCCGCCGCCGAAAAAGCCCTTCCTTTTGCCGAAGAGTT GGCAAAGGCCCATGGCGGACAGCTGCACCTCGTGTCGGTTTGCTCATGGG CGAGCACGAGTTTTCCCGCCGAGGCCGGTTACTACATCTCCCCAGAGTTG ATCGAGGCTCAGCTTAAGAGTCAAGATGAGTATCTTACAAAAGTCCAGCT CGATTTACACGAGCGCGGGCTCGAGGCAAAGACATATGGGCTCGAAGGGA ACGCTCTTCAGAGACTCCTTGAGTTTGCAGAGTCCCACAAGGTCGACCTG ATCGTTTTGACGTCCCACGGACGCACCGCATTCAAGCGATTCTTGCTTGG TAGCGTTGCCGAAAATGTGGCCCGCCTTGCTCCTTGCCCCGTGCTCCTGG TCGGTCACGAAAGCTTTGCCAACGCCAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57838:80..508-

>mRNA_P-wetherbeei_contig57838.1.1 ID=mRNA_P-wetherbeei_contig57838.1.1|Name=mRNA_P-wetherbeei_contig57838.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig57838:80..508- (Phaeothamnion wetherbeei SAG_119_79)
TTAGATGGCTCTCCCGCCGCCGAAAAAGCCCTTCCTTTTGCCGAAGAGTT
GGCAAAGGCCCATGGCGGACAGCTGCACCTCGTGTCGGTTTGCTCATGGG
CGAGCACGAGTTTTCCCGCCGAGGCCGGTTACTACATCTCCCCAGAGTTG
ATCGAGGCTCAGCTTAAGAGTCAAGATGAGTATCTTACAAAAGTCCAGCT
CGATTTACACGAGCGCGGGCTCGAGGCAAAGACATATGGGCTCGAAGGGA
ACGCTCTTCAGAGACTCCTTGAGTTTGCAGAGTCCCACAAGGTCGACCTG
ATCGTTTTGACGTCCCACGGACGCACCGCATTCAAGCGATTCTTGCTTGG
TAGCGTTGCCGAAAATGTGGCCCGCCTTGCTCCTTGCCCCGTGCTCCTGG
TCGGTCACGAAAGCTTTGCCAACGCCAAA
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