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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 1 |
| Model size | 1321 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Cds size | 927 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186856.7007718-UTR-P-wetherbeei_contig578:1485..1872 | 1683186856.7007718-UTR-P-wetherbeei_contig578:1485..1872 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig578 1486..1872 + |
| 1683186856.7142718-UTR-P-wetherbeei_contig578:2019..2024 | 1683186856.7142718-UTR-P-wetherbeei_contig578:2019..2024 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig578 2020..2024 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186856.7261553-CDS-P-wetherbeei_contig578:2024..2581 | 1683186856.7261553-CDS-P-wetherbeei_contig578:2024..2581 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig578 2025..2581 + |
| 1683186856.7347968-CDS-P-wetherbeei_contig578:2978..3141 | 1683186856.7347968-CDS-P-wetherbeei_contig578:2978..3141 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig578 2979..3141 + |
| 1683186856.7523818-CDS-P-wetherbeei_contig578:3351..3558 | 1683186856.7523818-CDS-P-wetherbeei_contig578:3351..3558 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig578 3352..3558 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig578.1.1 >prot_P-wetherbeei_contig578.1.1 ID=prot_P-wetherbeei_contig578.1.1|Name=mRNA_P-wetherbeei_contig578.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=309bp
MGAADRVDHRCTRCKKAKIDNRGCKRCSRIKALSGSGGIGQTSSSLPRPL
HKSLDSPHAITVFLGRGAAMATAADASAAASATAGDVSGNPYETDSVRGK
GCRQRPDFDVLRTDIIYSTHFIRCCIRHGHWHAALGGARAFQRRFYDRGF
GKEVPEEKSVDYWKGHLNNVVARMKQLDLLHMPDQALGATLLLYLHQVEP
RLHDEREELAREVEAAAIRTEAILRSARASFEEVLRSQTETARRMSRQAG
AAARTAENASKLAAFRDMGLSRLARATKQVAMRVPALLHQGRAGAARRLL
EAARADVAA back to topmRNA from alignment at P-wetherbeei_contig578:1486..3558+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig578.1.1 ID=mRNA_P-wetherbeei_contig578.1.1|Name=mRNA_P-wetherbeei_contig578.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2073bp|location=Sequence derived from alignment at P-wetherbeei_contig578:1486..3558+ (Phaeothamnion wetherbeei SAG_119_79)
TGAAATTTCCAATTTACAACGTTAGAACTGTATTCCAAGCGTTGCATACG
TTAGCGCAATTTACAAAAGATTTGTCAAAGATGGCCAAAGTGTTCCTTAT
CTGATACCAGAGGCCGCTGTAAAAAAACCTCAATACTACCGACCAACTTG
CGCCTACGGTGGTGCATCGTCAATGCGGCGTAGACCTTGCATTGCAACCG
AGTGTCGAAGAGGTTCAGTTCCCAGAAAATCGGGTCTGAAGGCAGAGGGC
AAGGGAACGACGCTATGATAGGAAGACGTCCGCCTATGGTCGAGGAGAAA
GCTCTTGCAACATTGCTGTCTGCCAGGTCGACCGCCTGCAAGCGCCGCGG
ACAGGCATAATCTCCCTTCTGGTACCAGATACTTAAGGTTGGCAGTTGCG
CGTTTTCTCCCTGCTTCATGTTTCTCTCGTCATGGAGCAGGGCATTGCGT
GAAGGCTCGTTCTTGTTCGGACGTGCTACTGAGAAGGACGAGACTCTCTC
CTGAAATAAATGAACACTTTTTGGCCCTTTGCAGGAGCCATGGGAGCTGC
AGACCGCGTCGATCATCGATGCACGCGATGCAAAAAAGCCAAGATCGACA
ACAGGGGATGCAAACGCTGTAGCAGGATCAAGGCATTGTCTGGATCGGGA
GGAATCGGCCAAACCTCATCGTCACTCCCGCGGCCGTTGCACAAATCGCT
GGATTCCCCGCACGCAATTACAGTTTTCTTGGGGAGAGGAGCGGCGATGG
CGACGGCCGCCGATGCTTCGGCGGCGGCGTCGGCGACGGCAGGTGACGTA
AGCGGAAACCCCTACGAAACCGACAGCGTCAGAGGAAAGGGGTGCCGACA
ACGACCAGACTTCGACGTCCTGCGCACGGACATCATCTACTCGACCCACT
TCATCCGCTGCTGCATCCGCCATGGCCACTGGCACGCCGCGCTCGGCGGC
GCGCGGGCCTTCCAGCGGCGCTTCTACGACCGCGGCTTTGGCAAAGAAGT
ACCTGAAGAGAAGAGCGTCGACTACTGGAAGGGCCACCTCAACAACGTCG
TCGCGCGGATGAAGCAGCTGGACCTCTTGCATATGCCCGACCAGGCGTGA
GTATACCGTCCCATCTCGCGTCGAAAGAAAGGAAGGAACAGATAGCAAAA
TCGGAGTGTTTAAAGCAGGAATAATCGGAGTTGTTTGTGCTCTCGAGTCC
GTCCATCAGCCGTGTCCTTCGCCTCTGGCCTTTGGGCTTGCGAATGTGCT
TTCTTTTGCATGTCCTCATCTCCTCGTTCGTTTGCCATTCCTGCATGCGG
AAATTCCATTCCTGTCCGCTTTCCTCCTTTTCTGTGCGCTGTTGCCACCT
CTCTGTGCCGGCCGATTCCCTCCCCGCGATTTGCCTGAATTTTTCTCTCT
GCGGCCCTCAACTGACTGACCCACCCGAAACTGAAAGAACCTGACGAATG
TAACGAGGCACAGTCCGCGCAAACACACATACAAACAAAACAGGCTGGGC
GCGACGCTGCTCCTCTATCTGCATCAGGTGGAGCCGCGGCTGCACGACGA
GCGCGAGGAGCTGGCGCGGGAGGTTGAGGCGGCGGCCATACGTACCGAAG
CCATCCTCCGGAGTGCGCGGGCGTCCTTCGAGGAGGTTTTACGCTCGCAG
ACCGAGGTGGGAGAGAAAAAAGGGGCGGGCGGGACGCTTTCCGTCTGTGA
TGCACAGTTCTGTCCTAGTGGAGCCACAGTTCTGTCCTAGTGGACATCAG
CGTTTGATGAAGGACTGGAATATTATAGAGACCGCTTGGCCGGTTTCCCC
GTGCCTGGCTCAGTCACTTGGATCAAATAACTTCTTCCTGTAATCGCCAC
GTGTCTGTTCTCTCAGACGGCGCGCCGGATGTCCCGCCAGGCCGGTGCTG
CTGCACGCACGGCCGAGAACGCCTCAAAGCTGGCCGCCTTCCGCGACATG
GGCCTCTCCCGGCTGGCGCGGGCGACGAAGCAAGTCGCGATGCGCGTGCC
GGCGTTGCTGCACCAGGGCCGCGCCGGAGCCGCACGCCGGCTGCTCGAGG
CGGCACGGGCGGACGTGGCGGCG back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig578:1486..3558+ >mRNA_P-wetherbeei_contig578.1.1 ID=mRNA_P-wetherbeei_contig578.1.1|Name=mRNA_P-wetherbeei_contig578.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=927bp|location=Sequence derived from alignment at P-wetherbeei_contig578:1486..3558+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGAGCTGCAGACCGCGTCGATCATCGATGCACGCGATGCAAAAAAGC
CAAGATCGACAACAGGGGATGCAAACGCTGTAGCAGGATCAAGGCATTGT
CTGGATCGGGAGGAATCGGCCAAACCTCATCGTCACTCCCGCGGCCGTTG
CACAAATCGCTGGATTCCCCGCACGCAATTACAGTTTTCTTGGGGAGAGG
AGCGGCGATGGCGACGGCCGCCGATGCTTCGGCGGCGGCGTCGGCGACGG
CAGGTGACGTAAGCGGAAACCCCTACGAAACCGACAGCGTCAGAGGAAAG
GGGTGCCGACAACGACCAGACTTCGACGTCCTGCGCACGGACATCATCTA
CTCGACCCACTTCATCCGCTGCTGCATCCGCCATGGCCACTGGCACGCCG
CGCTCGGCGGCGCGCGGGCCTTCCAGCGGCGCTTCTACGACCGCGGCTTT
GGCAAAGAAGTACCTGAAGAGAAGAGCGTCGACTACTGGAAGGGCCACCT
CAACAACGTCGTCGCGCGGATGAAGCAGCTGGACCTCTTGCATATGCCCG
ACCAGGCGCTGGGCGCGACGCTGCTCCTCTATCTGCATCAGGTGGAGCCG
CGGCTGCACGACGAGCGCGAGGAGCTGGCGCGGGAGGTTGAGGCGGCGGC
CATACGTACCGAAGCCATCCTCCGGAGTGCGCGGGCGTCCTTCGAGGAGG
TTTTACGCTCGCAGACCGAGACGGCGCGCCGGATGTCCCGCCAGGCCGGT
GCTGCTGCACGCACGGCCGAGAACGCCTCAAAGCTGGCCGCCTTCCGCGA
CATGGGCCTCTCCCGGCTGGCGCGGGCGACGAAGCAAGTCGCGATGCGCG
TGCCGGCGTTGCTGCACCAGGGCCGCGCCGGAGCCGCACGCCGGCTGCTC
GAGGCGGCACGGGCGGACGTGGCGGCG back to top
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