mRNA_P-wetherbeei_contig57773.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57773.1.1
Unique NamemRNA_P-wetherbeei_contig57773.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57773.1.1 vs. uniprot
Match: A0A344PFA2_9PHAE (DNA-directed RNA polymerase n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A344PFA2_9PHAE)

HSP 1 Score: 308 bits (789), Expect = 7.670e-95
Identity = 158/169 (93.49%), Postives = 165/169 (97.63%), Query Frame = 1 
Query:    1 EYATKSGISISIEDLRTPPVKIDLMRKSSLDALLTESQAKNGEITEVERFQRIIHIWNTTSEELKERLIEFFKKNDPLNSVYIMAFSGARGNISQVRQLIGMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 507
            EYATKSGISI IEDLR PP+KIDLMRK+SLDA LTE+QAKNGEITEVERFQRII+IWNTTSEELKERLIEFFKK DPLNSVYIMAFSGARGNISQVRQL+GMRGLMSDPSGRIIDRAIG+NFREGLSITDYIISSYGARKGLVDTA+KTADSGYLTRRLVEVAQSIIIS
Sbjct:   47 EYATKSGISIGIEDLRIPPIKIDLMRKASLDAFLTEAQAKNGEITEVERFQRIIYIWNTTSEELKERLIEFFKKTDPLNSVYIMAFSGARGNISQVRQLVGMRGLMSDPSGRIIDRAIGSNFREGLSITDYIISSYGARKGLVDTAVKTADSGYLTRRLVEVAQSIIIS 215
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BLAST of mRNA_P-wetherbeei_contig57773.1.1 vs. uniprot
Match: D1J789_ECTSI (DNA-directed RNA polymerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J789_ECTSI)

HSP 1 Score: 306 bits (784), Expect = 3.880e-94
Identity = 158/169 (93.49%), Postives = 164/169 (97.04%), Query Frame = 1 
Query:    1 EYATKSGISISIEDLRTPPVKIDLMRKSSLDALLTESQAKNGEITEVERFQRIIHIWNTTSEELKERLIEFFKKNDPLNSVYIMAFSGARGNISQVRQLIGMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 507
            EYATKSGISISIEDLR PPVKIDLMR++S DA LTE+QAKNGEITEVERFQRII+IWNTTSEELKERLIEFFKK DPLNSVYIMAFSGARGNI+QVRQL+GMRGLMSDPSGRIIDRAIG NFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS
Sbjct:   47 EYATKSGISISIEDLRIPPVKIDLMRRASFDAFLTEAQAKNGEITEVERFQRIIYIWNTTSEELKERLIEFFKKTDPLNSVYIMAFSGARGNIAQVRQLVGMRGLMSDPSGRIIDRAIGANFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 215
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BLAST of mRNA_P-wetherbeei_contig57773.1.1 vs. uniprot
Match: A0A6B7EYT5_9PHAE (DNA-directed RNA polymerase n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EYT5_9PHAE)

HSP 1 Score: 301 bits (771), Expect = 2.580e-92
Identity = 156/169 (92.31%), Postives = 162/169 (95.86%), Query Frame = 1 
Query:    1 EYATKSGISISIEDLRTPPVKIDLMRKSSLDALLTESQAKNGEITEVERFQRIIHIWNTTSEELKERLIEFFKKNDPLNSVYIMAFSGARGNISQVRQLIGMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 507
            EYATKS IS+SIEDLR PP KI LMR++SLDA LTE QAKNGEITEVERFQRII+IWNTTSEELKERLIEFFKK DPLNSVYIMAFSGARGN+SQVRQL+GMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS
Sbjct:   47 EYATKSAISLSIEDLRIPPAKIALMRRASLDAFLTEVQAKNGEITEVERFQRIIYIWNTTSEELKERLIEFFKKTDPLNSVYIMAFSGARGNLSQVRQLVGMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 215
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BLAST of mRNA_P-wetherbeei_contig57773.1.1 vs. uniprot
Match: A0A1I9LV94_9PHAE (DNA-directed RNA polymerase n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LV94_9PHAE)

HSP 1 Score: 296 bits (758), Expect = 1.750e-90
Identity = 151/169 (89.35%), Postives = 163/169 (96.45%), Query Frame = 1 
Query:    1 EYATKSGISISIEDLRTPPVKIDLMRKSSLDALLTESQAKNGEITEVERFQRIIHIWNTTSEELKERLIEFFKKNDPLNSVYIMAFSGARGNISQVRQLIGMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 507
            EYATKSGISISIEDL+ PPVKI+LM+++S DA+LTE+QAKNGEITEVERFQR+I+IWN+TSEELKERLIEFFKK DPLNSVYIMAFSGARGNISQVRQL+GMRGLM DPSGRIID+AI  NFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS
Sbjct:   47 EYATKSGISISIEDLKVPPVKIELMKRASSDAILTEAQAKNGEITEVERFQRLIYIWNSTSEELKERLIEFFKKTDPLNSVYIMAFSGARGNISQVRQLVGMRGLMCDPSGRIIDKAIAANFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 215
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BLAST of mRNA_P-wetherbeei_contig57773.1.1 vs. uniprot
Match: A0A8F0F804_9PHAE (DNA-directed RNA polymerase n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F804_9PHAE)

HSP 1 Score: 291 bits (745), Expect = 1.130e-88
Identity = 150/169 (88.76%), Postives = 159/169 (94.08%), Query Frame = 1 
Query:    1 EYATKSGISISIEDLRTPPVKIDLMRKSSLDALLTESQAKNGEITEVERFQRIIHIWNTTSEELKERLIEFFKKNDPLNSVYIMAFSGARGNISQVRQLIGMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 507
            EYATKSGISISIEDLR PP KI LM+ +S D  L ESQA NGEITEVERFQRII+IWN+TSEELKERLI+FFKKNDPLNSVYIMAFSGARGNI+QVRQL+GMRGLMSDP+G+IIDRAIG NFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS
Sbjct:   47 EYATKSGISISIEDLRIPPAKIPLMKIASQDVFLAESQANNGEITEVERFQRIIYIWNSTSEELKERLIDFFKKNDPLNSVYIMAFSGARGNIAQVRQLVGMRGLMSDPNGKIIDRAIGANFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 215
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BLAST of mRNA_P-wetherbeei_contig57773.1.1 vs. uniprot
Match: D1GJH4_FUCVE (DNA-directed RNA polymerase subunit beta'' n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJH4_FUCVE)

HSP 1 Score: 284 bits (727), Expect = 3.770e-86
Identity = 146/169 (86.39%), Postives = 157/169 (92.90%), Query Frame = 1 
Query:    1 EYATKSGISISIEDLRTPPVKIDLMRKSSLDALLTESQAKNGEITEVERFQRIIHIWNTTSEELKERLIEFFKKNDPLNSVYIMAFSGARGNISQVRQLIGMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 507
            EYATKSGISISIEDLR PPVK  LM+ ++ D  +TES+A NGEITEVERFQ+II+IWN TSEELKERLI+FFKK DPLNSVYIMAFSGARGNISQVRQL+GMRGLMSDP+G+IIDRAI  NFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS
Sbjct:   52 EYATKSGISISIEDLRIPPVKTTLMKNATRDVFITESKANNGEITEVERFQKIIYIWNNTSEELKERLIDFFKKTDPLNSVYIMAFSGARGNISQVRQLVGMRGLMSDPNGQIIDRAITANFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 220
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BLAST of mRNA_P-wetherbeei_contig57773.1.1 vs. uniprot
Match: A0A0R6M448_UNDPI (DNA-directed RNA polymerase n=32 Tax=Laminariales TaxID=2886 RepID=A0A0R6M448_UNDPI)

HSP 1 Score: 283 bits (724), Expect = 9.680e-86
Identity = 147/169 (86.98%), Postives = 156/169 (92.31%), Query Frame = 1 
Query:    1 EYATKSGISISIEDLRTPPVKIDLMRKSSLDALLTESQAKNGEITEVERFQRIIHIWNTTSEELKERLIEFFKKNDPLNSVYIMAFSGARGNISQVRQLIGMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 507
            EYATKSGISISIEDL+  P K  LM  +S D  L ESQA NGEITEVERFQRII+IWN+TSEELK+RLIEFFKKNDPLNSVYIMAFSGARGNI+QVRQL+GMRGLMSDP+G+IIDRAIG NFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS
Sbjct:   47 EYATKSGISISIEDLKISPAKSALMEIASNDVFLAESQANNGEITEVERFQRIIYIWNSTSEELKDRLIEFFKKNDPLNSVYIMAFSGARGNIAQVRQLVGMRGLMSDPNGKIIDRAIGANFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 215
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BLAST of mRNA_P-wetherbeei_contig57773.1.1 vs. uniprot
Match: A0A8F0FAT1_9PHAE (DNA-directed RNA polymerase n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAT1_9PHAE)

HSP 1 Score: 281 bits (720), Expect = 3.460e-85
Identity = 145/169 (85.80%), Postives = 156/169 (92.31%), Query Frame = 1 
Query:    1 EYATKSGISISIEDLRTPPVKIDLMRKSSLDALLTESQAKNGEITEVERFQRIIHIWNTTSEELKERLIEFFKKNDPLNSVYIMAFSGARGNISQVRQLIGMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 507
            EYATKSGISISIEDLR PP K  LM+ ++ D   TES+A NGEITEVERFQ++I+IWNTTSEELKERLI+F KK DPLNSVYIMAFSGARGNISQVRQLIGMRGLMSDP+G+IIDRAIG NFREGLSITDYIISSYGARKG+VDTAIKTADSGYLTRRLVEVAQSIIIS
Sbjct:   47 EYATKSGISISIEDLRIPPAKTVLMQNATEDVFTTESRANNGEITEVERFQKLIYIWNTTSEELKERLIDFLKKTDPLNSVYIMAFSGARGNISQVRQLIGMRGLMSDPNGQIIDRAIGANFREGLSITDYIISSYGARKGIVDTAIKTADSGYLTRRLVEVAQSIIIS 215
[Close]
BLAST of mRNA_P-wetherbeei_contig57773.1.1 vs. uniprot
Match: A0A8F0F9S6_9PHAE (DNA-directed RNA polymerase n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9S6_9PHAE)

HSP 1 Score: 281 bits (720), Expect = 3.500e-85
Identity = 144/169 (85.21%), Postives = 155/169 (91.72%), Query Frame = 1 
Query:    1 EYATKSGISISIEDLRTPPVKIDLMRKSSLDALLTESQAKNGEITEVERFQRIIHIWNTTSEELKERLIEFFKKNDPLNSVYIMAFSGARGNISQVRQLIGMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 507
            EYATKSGISISIEDL+ PP KI LM  +S    L ESQA NGEITEVERFQRIIHIW+TTSEELKERL++FFKK DPLNSVYIMAFSGARGNI QVRQL+GMRGLM+DP+G+IID+AIG NFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIII+
Sbjct:   47 EYATKSGISISIEDLKIPPAKISLMESASHAISLAESQASNGEITEVERFQRIIHIWSTTSEELKERLVDFFKKRDPLNSVYIMAFSGARGNIEQVRQLVGMRGLMADPNGKIIDKAIGANFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIN 215
[Close]
BLAST of mRNA_P-wetherbeei_contig57773.1.1 vs. uniprot
Match: A0A8E5F971_9PHAE (DNA-directed RNA polymerase n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5F971_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 6.530e-85
Identity = 141/168 (83.93%), Postives = 155/168 (92.26%), Query Frame = 1 
Query:    4 YATKSGISISIEDLRTPPVKIDLMRKSSLDALLTESQAKNGEITEVERFQRIIHIWNTTSEELKERLIEFFKKNDPLNSVYIMAFSGARGNISQVRQLIGMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIIS 507
            YATKSGISIS+EDLRTPP+K+ LM+K+S   + T+ QA +GEITEVERFQ+IIH+WNTTS ELK+RL+ FFKK DPLNSVYIMAFSGARGN+ QVRQL+GMRGLMSDPSG IIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQ IIIS
Sbjct:   48 YATKSGISISLEDLRTPPIKVPLMQKASTKIIQTDDQANHGEITEVERFQKIIHVWNTTSTELKDRLVTFFKKADPLNSVYIMAFSGARGNLEQVRQLVGMRGLMSDPSGNIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTADSGYLTRRLVEVAQRIIIS 215
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57773.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A344PFA2_9PHAE7.670e-9593.49DNA-directed RNA polymerase n=5 Tax=Scytosiphonace... [more]
D1J789_ECTSI3.880e-9493.49DNA-directed RNA polymerase n=2 Tax=Ectocarpus sil... [more]
A0A6B7EYT5_9PHAE2.580e-9292.31DNA-directed RNA polymerase n=1 Tax=Cladosiphon ok... [more]
A0A1I9LV94_9PHAE1.750e-9089.35DNA-directed RNA polymerase n=1 Tax=Pleurocladia l... [more]
A0A8F0F804_9PHAE1.130e-8888.76DNA-directed RNA polymerase n=2 Tax=Laminariales T... [more]
D1GJH4_FUCVE3.770e-8686.39DNA-directed RNA polymerase subunit beta'' n=3 Tax... [more]
A0A0R6M448_UNDPI9.680e-8686.98DNA-directed RNA polymerase n=32 Tax=Laminariales ... [more]
A0A8F0FAT1_9PHAE3.460e-8585.80DNA-directed RNA polymerase n=1 Tax=Desmarestia ac... [more]
A0A8F0F9S6_9PHAE3.500e-8585.21DNA-directed RNA polymerase n=1 Tax=Chorda asiatic... [more]
A0A8E5F971_9PHAE6.530e-8583.93DNA-directed RNA polymerase n=1 Tax=Phaeophyceae s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57773contigP-wetherbeei_contig57773:3..509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog551115.Aazo_1014
Preferred namerpoC2
PFAMsRNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5
Model size507
Max annot lvl1117|Cyanobacteria
KEGG rclassRC02795
KEGG koko:K03046
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00183
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0030880,GO:0032991,GO:0044424,GO:0044464,GO:0061695,GO:1902494,GO:1990234
Exons1
Evalue1.85e-69
EggNOG OGsCOG0086@1|root,COG0086@2|Bacteria,1G08B@1117|Cyanobacteria,1HIRD@1161|Nostocales
EC2.7.7.6
DescriptionDNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
Cds size507
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186856.4888713-CDS-P-wetherbeei_contig57773:2..5091683186856.4888713-CDS-P-wetherbeei_contig57773:2..509Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57773 3..509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57773.1.1prot_P-wetherbeei_contig57773.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57773 3..509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57773.1.1

>prot_P-wetherbeei_contig57773.1.1 ID=prot_P-wetherbeei_contig57773.1.1|Name=mRNA_P-wetherbeei_contig57773.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
EYATKSGISISIEDLRTPPVKIDLMRKSSLDALLTESQAKNGEITEVERF
QRIIHIWNTTSEELKERLIEFFKKNDPLNSVYIMAFSGARGNISQVRQLI
GMRGLMSDPSGRIIDRAIGTNFREGLSITDYIISSYGARKGLVDTAIKTA
DSGYLTRRLVEVAQSIIIS
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mRNA from alignment at P-wetherbeei_contig57773:3..509-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57773.1.1 ID=mRNA_P-wetherbeei_contig57773.1.1|Name=mRNA_P-wetherbeei_contig57773.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig57773:3..509- (Phaeothamnion wetherbeei SAG_119_79)
GAATATGCAACCAAATCTGGTATCTCTATAAGTATTGAAGATTTAAGAAC
CCCACCTGTAAAAATTGACCTTATGCGTAAATCATCTTTAGATGCGCTTT
TAACTGAATCCCAAGCAAAGAACGGGGAAATTACAGAAGTAGAAAGATTT
CAAAGAATTATTCATATTTGGAATACCACTAGTGAAGAATTAAAAGAACG
ACTTATAGAATTTTTTAAAAAGAATGACCCTTTAAATTCTGTTTATATTA
TGGCTTTTTCAGGTGCACGTGGTAACATTTCACAAGTCCGCCAATTAATT
GGTATGCGAGGGTTAATGTCTGATCCAAGTGGAAGAATTATTGATAGAGC
AATTGGAACAAATTTCCGCGAAGGGTTATCAATTACAGATTATATTATTT
CTTCTTATGGTGCTCGGAAAGGCCTGGTTGATACAGCAATTAAAACTGCT
GATTCAGGTTATTTGACACGAAGACTTGTTGAAGTTGCTCAAAGTATTAT
AATTAGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57773:3..509-

>mRNA_P-wetherbeei_contig57773.1.1 ID=mRNA_P-wetherbeei_contig57773.1.1|Name=mRNA_P-wetherbeei_contig57773.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig57773:3..509- (Phaeothamnion wetherbeei SAG_119_79)
GAATATGCAACCAAATCTGGTATCTCTATAAGTATTGAAGATTTAAGAAC
CCCACCTGTAAAAATTGACCTTATGCGTAAATCATCTTTAGATGCGCTTT
TAACTGAATCCCAAGCAAAGAACGGGGAAATTACAGAAGTAGAAAGATTT
CAAAGAATTATTCATATTTGGAATACCACTAGTGAAGAATTAAAAGAACG
ACTTATAGAATTTTTTAAAAAGAATGACCCTTTAAATTCTGTTTATATTA
TGGCTTTTTCAGGTGCACGTGGTAACATTTCACAAGTCCGCCAATTAATT
GGTATGCGAGGGTTAATGTCTGATCCAAGTGGAAGAATTATTGATAGAGC
AATTGGAACAAATTTCCGCGAAGGGTTATCAATTACAGATTATATTATTT
CTTCTTATGGTGCTCGGAAAGGCCTGGTTGATACAGCAATTAAAACTGCT
GATTCAGGTTATTTGACACGAAGACTTGTTGAAGTTGCTCAAAGTATTAT
AATTAGT
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