mRNA_P-wetherbeei_contig57765.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57765.1.1
Unique NamemRNA_P-wetherbeei_contig57765.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57765.1.1 vs. uniprot
Match: UPI001C3C886B (tRNA (guanosine(37)-N1)-methyltransferase TrmD n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3C886B)

HSP 1 Score: 299 bits (765), Expect = 3.520e-101
Identity = 148/169 (87.57%), Postives = 155/169 (91.72%), Query Frame = 1
Query:    1 ELRCFSPRDTTPLAHGQVDDSPYGGGPGMVIRADVIAASLEAVYGEPAREVRDHRRVVVLTPRGRPFTDAVARELAHEPELALLCGRYEGFDERVHEVLANDAICLGPFVLAGGEAAAMAVIDAVARKLEGALGNADSLLAESFSEALGGGLEHPHYTRPATFLGHDVP 507
            E+RCFSPRDTTPL  GQVDD+PYGGGPGMV+R DV+AASLEAVYGEPA EVRDHRRVVVLTPRGRPFTDAVARELAHEPELALLCGRYEGFDERVH VLAND ICLGPFVLAGGE AAMAVIDAVAR+L GALGN +SL AESFSE LGGG+EHPHYTRPA FLG  VP
Sbjct:   32 EVRCFSPRDTTPLRQGQVDDAPYGGGPGMVLRVDVMAASLEAVYGEPAAEVRDHRRVVVLTPRGRPFTDAVARELAHEPELALLCGRYEGFDERVHTVLANDEICLGPFVLAGGEVAAMAVIDAVARQLHGALGNRESLDAESFSEGLGGGVEHPHYTRPAEFLGVGVP 200          
BLAST of mRNA_P-wetherbeei_contig57765.1.1 vs. uniprot
Match: UPI001C3E2B51 (tRNA (guanosine(37)-N1)-methyltransferase TrmD n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3E2B51)

HSP 1 Score: 292 bits (747), Expect = 1.940e-98
Identity = 143/169 (84.62%), Postives = 153/169 (90.53%), Query Frame = 1
Query:    1 ELRCFSPRDTTPLAHGQVDDSPYGGGPGMVIRADVIAASLEAVYGEPAREVRDHRRVVVLTPRGRPFTDAVARELAHEPELALLCGRYEGFDERVHEVLANDAICLGPFVLAGGEAAAMAVIDAVARKLEGALGNADSLLAESFSEALGGGLEHPHYTRPATFLGHDVP 507
            ELRCFSPRDTTPL+HGQVDD+PYGGGPGMV+R DV+AA+LEAVYGEPA  VRD RRVVVLTPRGRPFTDAVARELA  PEL LLCGRYEGFDERVHEVLA D I LGPFVLAGGE AAMA+IDAV R+LEGALGNA+SL AESFSE LGGG+EHPHYTRPA F GH+VP
Sbjct:   32 ELRCFSPRDTTPLSHGQVDDAPYGGGPGMVLRVDVVAAALEAVYGEPAERVRDRRRVVVLTPRGRPFTDAVARELAALPELVLLCGRYEGFDERVHEVLAGDEIRLGPFVLAGGEVAAMAIIDAVGRRLEGALGNAESLRAESFSEELGGGVEHPHYTRPAAFRGHEVP 200          
BLAST of mRNA_P-wetherbeei_contig57765.1.1 vs. uniprot
Match: A0A524J9Z8_9ACTN (tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A524J9Z8_9ACTN)

HSP 1 Score: 208 bits (530), Expect = 1.750e-65
Identity = 106/169 (62.72%), Postives = 129/169 (76.33%), Query Frame = 1
Query:    1 ELRCFSPRDTTPLAHGQVDDSPYGGGPGMVIRADVIAASLEAVYGEPAREVRDHRRVVVLTPRGRPFTDAVARELAHEPELALLCGRYEGFDERVHEVLANDAICLGPFVLAGGEAAAMAVIDAVARKLEGALGNADSLLAESFSEALGGGLEHPHYTRPATFLGHDVP 507
            E+RCF+ RDTTPL  GQVDDSPYGGG GMV+R DV+ A+L++ YG+         R V+LTP GR F D +A ELA EP+LALLCGRYEG D+RV E +A+DAI +G +VLAGGE AAM + DAV RKL GALG+++S+L ESFSEALGG  E+PHYTRP T+ G  VP
Sbjct:   31 EVRCFNYRDTTPLRAGQVDDSPYGGGAGMVMRVDVVDAALDSAYGQSG----SRPRTVLLTPSGRIFDDGLANELAAEPDLALLCGRYEGIDDRVREHIADDAISIGRYVLAGGELAAMVIADAVLRKLPGALGHSESVLEESFSEALGGAPEYPHYTRPPTYRGWGVP 195          
BLAST of mRNA_P-wetherbeei_contig57765.1.1 vs. uniprot
Match: A0A538F6Q8_9ACTN (tRNA (guanine-N(1)-)-methyltransferase n=2 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538F6Q8_9ACTN)

HSP 1 Score: 208 bits (529), Expect = 2.720e-65
Identity = 106/169 (62.72%), Postives = 124/169 (73.37%), Query Frame = 1
Query:    1 ELRCFSPRDTTPLAHGQVDDSPYGGGPGMVIRADVIAASLEAVYGEPAREVRDHRRVVVLTPRGRPFTDAVARELAHEPELALLCGRYEGFDERVHEVLANDAICLGPFVLAGGEAAAMAVIDAVARKLEGALGNADSLLAESFSEALGGGLEHPHYTRPATFLGHDVP 507
            ELR    R+TTPL  GQVDD+PYGGG GMVIR DV+ A+L   YGE A +VR  RRV+ L   GR F DA+A ELA   +L LLCGRYEGFDERVHE LA+D + +GP+VL+GGE AAM V DAV RKL GALG+ +S + ESFS ALGG  E+PHYTRP  + GH VP
Sbjct:   29 ELRAIDLRETTPLRAGQVDDTPYGGGAGMVIRVDVVEAALRERYGEDAAQVRGRRRVIALAAGGRQFDDALADELAEGGDLTLLCGRYEGFDERVHEHLASDVVSIGPYVLSGGELAAMVVCDAVIRKLPGALGDEESAVEESFSPALGGAPEYPHYTRPVEWRGHRVP 197          
BLAST of mRNA_P-wetherbeei_contig57765.1.1 vs. uniprot
Match: A0A838PKL4_9ACTN (tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Thermoleophilaceae bacterium TaxID=2732252 RepID=A0A838PKL4_9ACTN)

HSP 1 Score: 205 bits (522), Expect = 3.800e-64
Identity = 107/169 (63.31%), Postives = 124/169 (73.37%), Query Frame = 1
Query:    1 ELRCFSPRDTTPLAHGQVDDSPYGGGPGMVIRADVIAASLEAVYGEPAREVRDHRRVVVLTPRGRPFTDAVARELAHEPELALLCGRYEGFDERVHEVLANDAICLGPFVLAGGEAAAMAVIDAVARKLEGALGNADSLLAESFSEALGGGLEHPHYTRPATFLGHDVP 507
            EL     R TTPL+ G+VDD+PYGGG GMVIR DV+ A+L   YG  A EVR   RV+ L   GR F DA+A ELA EP LALLCGRYEGFD+RVHE LA+D + +GP+VL+GGE AAM V DAV RKL GALG+ADS   ESFS AL GG E+PH+TRPA + GH VP
Sbjct:   31 ELATVDMRTTTPLSAGRVDDTPYGGGAGMVIRVDVVEAALARHYGTDAVEVRAQHRVIALAAGGRRFDDALASELAAEPALALLCGRYEGFDDRVHEHLASDVLSIGPYVLSGGEPAAMVVCDAVVRKLAGALGHADSAAEESFSPALEGGPEYPHFTRPAEWRGHRVP 199          
BLAST of mRNA_P-wetherbeei_contig57765.1.1 vs. uniprot
Match: A0A1Q7WWS0_9ACTN (tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Actinobacteria bacterium 13_1_20CM_3_68_9 TaxID=1803475 RepID=A0A1Q7WWS0_9ACTN)

HSP 1 Score: 205 bits (521), Expect = 4.320e-64
Identity = 106/169 (62.72%), Postives = 128/169 (75.74%), Query Frame = 1
Query:    1 ELRCFSPRDTTPLAHGQVDDSPYGGGPGMVIRADVIAASLEAVYGEPAREVRDHRRVVVLTPRGRPFTDAVARELAHEPELALLCGRYEGFDERVHEVLANDAICLGPFVLAGGEAAAMAVIDAVARKLEGALGNADSLLAESFSEALGGGLEHPHYTRPATFLGHDVP 507
            E+R F+ R+TTPL  GQVDDSPYGGG GMV+R D + A+L A YGE     R+ RR+V+L P GR   DA+A ELA E E+ALLCGRYEG DERV E LA+DA+ +GP+VL+GGE AAM V D V RKL GALG+ADS + ESFS ALGG  E+PHYTRPA++ G +VP
Sbjct:   31 EIRFFNYRETTPLGGGQVDDSPYGGGAGMVLRVDAVDAALAAAYGED----REGRRIVLLAPFGRQLDDALAAELAAEREVALLCGRYEGVDERVREHLASDALSIGPYVLSGGELAAMVVADVVIRKLPGALGHADSAVEESFSSALGGAPEYPHYTRPASYRGWEVP 195          
BLAST of mRNA_P-wetherbeei_contig57765.1.1 vs. uniprot
Match: UPI00196AE4FF (tRNA (guanosine(37)-N1)-methyltransferase TrmD n=1 Tax=Conexibacter sp. SYSU D00693 TaxID=2812560 RepID=UPI00196AE4FF)

HSP 1 Score: 204 bits (520), Expect = 2.390e-63
Identity = 102/169 (60.36%), Postives = 126/169 (74.56%), Query Frame = 1
Query:    1 ELRCFSPRDTTPLAHGQVDDSPYGGGPGMVIRADVIAASLEAVYGEPAREVRDHRRVVVLTPRGRPFTDAVARELAHEPELALLCGRYEGFDERVHEVLANDAICLGPFVLAGGEAAAMAVIDAVARKLEGALGNADSLLAESFSEALGGGLEHPHYTRPATFLGHDVP 507
            ELR  +PR+ TPL+ GQVDD+P+GGG GMV+R DV+ A+L   YG    E+R  RRV+ LTP GR   DA+  ELA EP + LLCGRYEGFDER+ +  A+DA+ +G FVL+GGE AAM V+DA+ RKL GALG+ADS L ESFS+ALGG  E+PHYTRPA + G  VP
Sbjct:   31 ELRALNPREHTPLSGGQVDDTPFGGGAGMVLRVDVMDAALRGFYGTDPVELRSQRRVIALTPGGRMLDDALVDELAEEPAITLLCGRYEGFDERIVQHFASDAVSVGRFVLSGGELAAMVVMDAILRKLPGALGHADSALEESFSQALGGDPEYPHYTRPAEYRGWKVP 199          
BLAST of mRNA_P-wetherbeei_contig57765.1.1 vs. uniprot
Match: A0A2H6B882_9BACT (tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=bacterium HR41 TaxID=2035436 RepID=A0A2H6B882_9BACT)

HSP 1 Score: 202 bits (515), Expect = 4.380e-63
Identity = 104/168 (61.90%), Postives = 120/168 (71.43%), Query Frame = 1
Query:    4 LRCFSPRDTTPLAHGQVDDSPYGGGPGMVIRADVIAASLEAVYGEPAREVRDHRRVVVLTPRGRPFTDAVARELAHEPELALLCGRYEGFDERVHEVLANDAICLGPFVLAGGEAAAMAVIDAVARKLEGALGNADSLLAESFSEALGGGLEHPHYTRPATFLGHDVP 507
            +     R TTPL  GQVDD+PYGGG GMVIR DV+AA+LEA Y   A  VR+ RRV+ L P GR F DA+A ELA EP L LLCGRYEGFDERVH  LA+D + +GP+VL+GGE  AM V+DAV RKL G LG+  S L ESFS ALGG  E+PHYTR A + G  VP
Sbjct:   32 IEAIDLRATTPLRAGQVDDTPYGGGAGMVIRVDVVAAALEARYATDALAVREQRRVIALAPSGRQFDDALAEELAREPALTLLCGRYEGFDERVHSHLASDVVSIGPYVLSGGELPAMVVVDAVLRKLPGVLGDPASALEESFSRALGGAPEYPHYTRQAAWRGVRVP 199          
BLAST of mRNA_P-wetherbeei_contig57765.1.1 vs. uniprot
Match: A0A7V9S1V2_9ACTN (tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Thermoleophilaceae bacterium TaxID=2732252 RepID=A0A7V9S1V2_9ACTN)

HSP 1 Score: 201 bits (512), Expect = 1.070e-62
Identity = 105/168 (62.50%), Postives = 122/168 (72.62%), Query Frame = 1
Query:    4 LRCFSPRDTTPLAHGQVDDSPYGGGPGMVIRADVIAASLEAVYGEPAREVRDHRRVVVLTPRGRPFTDAVARELAHEPELALLCGRYEGFDERVHEVLANDAICLGPFVLAGGEAAAMAVIDAVARKLEGALGNADSLLAESFSEALGGGLEHPHYTRPATFLGHDVP 507
            L     R TTPL  G+VDD+PYGGG GMVIR DV+ A+L   Y     E+ + RRVV L P GRPF DA+A ELA  PEL LLCGRYEGFDERVHE L++D + +GP+VL+GGE AAM V DAV RKL GALG+A+S   ESFS AL G  E+PHYTRPAT+ G DVP
Sbjct:   32 LEVIDLRATTPLQGGRVDDTPYGGGAGMVIRVDVVEAALAERYRCDPLELPEQRRVVALAPAGRPFDDALASELADAPELTLLCGRYEGFDERVHERLSSDVVSVGPYVLSGGELAAMVVCDAVLRKLPGALGHAESATEESFSAALEGAPEYPHYTRPATWRGTDVP 199          
BLAST of mRNA_P-wetherbeei_contig57765.1.1 vs. uniprot
Match: A0A6J4RZR7_9ACTN (tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=uncultured Solirubrobacteraceae bacterium TaxID=1162706 RepID=A0A6J4RZR7_9ACTN)

HSP 1 Score: 201 bits (510), Expect = 2.010e-62
Identity = 101/169 (59.76%), Postives = 123/169 (72.78%), Query Frame = 1
Query:    1 ELRCFSPRDTTPLAHGQVDDSPYGGGPGMVIRADVIAASLEAVYGEPAREVRDHRRVVVLTPRGRPFTDAVARELAHEPELALLCGRYEGFDERVHEVLANDAICLGPFVLAGGEAAAMAVIDAVARKLEGALGNADSLLAESFSEALGGGLEHPHYTRPATFLGHDVP 507
            ELRC +PRD TPL+ GQVDD+P+GGG GMV+R DV+  +L  +YG    E+R  RRV+ LTP GR   DA   ELA EP + LLCGRYEGFDER+ +  A+D + +G +VL+GGE AAM V DAV RKL GALG+ADS + ESFS ALGG  E+PHYTRPA + G  VP
Sbjct:   31 ELRCLNPRDHTPLSGGQVDDTPFGGGAGMVLRVDVMDHALRGMYGVDPAELRTSRRVIALTPGGRMLDDAFVDELAAEPAITLLCGRYEGFDERIVQHFASDTLSVGRYVLSGGELAAMVVADAVLRKLPGALGHADSAVEESFSAALGGNPEYPHYTRPAEYRGWKVP 199          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57765.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3C886B3.520e-10187.57tRNA (guanosine(37)-N1)-methyltransferase TrmD n=1... [more]
UPI001C3E2B511.940e-9884.62tRNA (guanosine(37)-N1)-methyltransferase TrmD n=1... [more]
A0A524J9Z8_9ACTN1.750e-6562.72tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Sol... [more]
A0A538F6Q8_9ACTN2.720e-6562.72tRNA (guanine-N(1)-)-methyltransferase n=2 Tax=Act... [more]
A0A838PKL4_9ACTN3.800e-6463.31tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=The... [more]
A0A1Q7WWS0_9ACTN4.320e-6462.72tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Act... [more]
UPI00196AE4FF2.390e-6360.36tRNA (guanosine(37)-N1)-methyltransferase TrmD n=1... [more]
A0A2H6B882_9BACT4.380e-6361.90tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=bac... [more]
A0A7V9S1V2_9ACTN1.070e-6262.50tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=The... [more]
A0A6J4RZR7_9ACTN2.010e-6259.76tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=unc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57765contigP-wetherbeei_contig57765:1..507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1283299.AUKG01000002_gene4751
Preferred nametrmD
PFAMstRNA_m1G_MT
Model size507
Max annot lvl84995|Rubrobacteria
KEGG rclassRC00003,RC00334
KEGG koko:K00554
KEGG ReactionR00597
Hectar predicted targeting categoryother localisation
Exons1
Evalue1e-61
EggNOG OGsCOG0336@1|root,COG0336@2|Bacteria,2GJ1G@201174|Actinobacteria,4CPQ4@84995|Rubrobacteria
EC2.1.1.228
DescriptionBelongs to the RNA methyltransferase TrmD family
Cds size507
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186856.2459748-CDS-P-wetherbeei_contig57765:0..5071683186856.2459748-CDS-P-wetherbeei_contig57765:0..507Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57765 1..507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57765.1.1prot_P-wetherbeei_contig57765.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57765 1..507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57765.1.1

>prot_P-wetherbeei_contig57765.1.1 ID=prot_P-wetherbeei_contig57765.1.1|Name=mRNA_P-wetherbeei_contig57765.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
ELRCFSPRDTTPLAHGQVDDSPYGGGPGMVIRADVIAASLEAVYGEPARE
VRDHRRVVVLTPRGRPFTDAVARELAHEPELALLCGRYEGFDERVHEVLA
NDAICLGPFVLAGGEAAAMAVIDAVARKLEGALGNADSLLAESFSEALGG
GLEHPHYTRPATFLGHDVP
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mRNA from alignment at P-wetherbeei_contig57765:1..507+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57765.1.1 ID=mRNA_P-wetherbeei_contig57765.1.1|Name=mRNA_P-wetherbeei_contig57765.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig57765:1..507+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCTGCGCTGCTTCTCGCCCCGCGACACGACTCCGCTCGCACACGGCCA GGTCGACGACTCGCCCTACGGCGGAGGCCCCGGGATGGTCATCCGGGCCG ATGTGATCGCCGCCTCCCTCGAGGCGGTCTACGGCGAGCCCGCCCGCGAG GTGAGGGACCATCGGCGGGTCGTCGTGCTGACCCCCCGCGGCCGACCGTT CACGGACGCCGTCGCCCGCGAGCTCGCACACGAGCCCGAGCTCGCCCTCC TGTGCGGCCGCTACGAGGGCTTCGACGAGCGCGTGCACGAGGTCCTCGCC AACGACGCCATCTGCCTGGGGCCGTTCGTGCTCGCGGGCGGGGAGGCCGC CGCGATGGCCGTCATCGACGCGGTCGCCCGCAAGCTGGAGGGTGCCCTCG GCAACGCCGACAGCCTCCTCGCCGAGTCCTTCTCCGAGGCCCTCGGCGGC GGGCTGGAGCATCCCCACTACACGCGGCCTGCGACGTTCCTGGGGCACGA TGTGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57765:1..507+

>mRNA_P-wetherbeei_contig57765.1.1 ID=mRNA_P-wetherbeei_contig57765.1.1|Name=mRNA_P-wetherbeei_contig57765.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig57765:1..507+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCTGCGCTGCTTCTCGCCCCGCGACACGACTCCGCTCGCACACGGCCA
GGTCGACGACTCGCCCTACGGCGGAGGCCCCGGGATGGTCATCCGGGCCG
ATGTGATCGCCGCCTCCCTCGAGGCGGTCTACGGCGAGCCCGCCCGCGAG
GTGAGGGACCATCGGCGGGTCGTCGTGCTGACCCCCCGCGGCCGACCGTT
CACGGACGCCGTCGCCCGCGAGCTCGCACACGAGCCCGAGCTCGCCCTCC
TGTGCGGCCGCTACGAGGGCTTCGACGAGCGCGTGCACGAGGTCCTCGCC
AACGACGCCATCTGCCTGGGGCCGTTCGTGCTCGCGGGCGGGGAGGCCGC
CGCGATGGCCGTCATCGACGCGGTCGCCCGCAAGCTGGAGGGTGCCCTCG
GCAACGCCGACAGCCTCCTCGCCGAGTCCTTCTCCGAGGCCCTCGGCGGC
GGGCTGGAGCATCCCCACTACACGCGGCCTGCGACGTTCCTGGGGCACGA
TGTGCCC
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