mRNA_P-wetherbeei_contig5776.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5776.3.1
Unique NamemRNA_P-wetherbeei_contig5776.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5776.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5776contigP-wetherbeei_contig5776:2484..3709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size983
Hectar predicted targeting categoryother localisation
Exons2
Cds size762
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186856.13824-UTR-P-wetherbeei_contig5776:2483..27031683186856.13824-UTR-P-wetherbeei_contig5776:2483..2703Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5776 2484..2703 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186856.1482325-CDS-P-wetherbeei_contig5776:2703..27491683186856.1482325-CDS-P-wetherbeei_contig5776:2703..2749Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5776 2704..2749 +
1683186856.1576912-CDS-P-wetherbeei_contig5776:2993..37091683186856.1576912-CDS-P-wetherbeei_contig5776:2993..3709Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5776 2994..3709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5776.3.1prot_P-wetherbeei_contig5776.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5776 2704..3709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5776.3.1

>prot_P-wetherbeei_contig5776.3.1 ID=prot_P-wetherbeei_contig5776.3.1|Name=mRNA_P-wetherbeei_contig5776.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=254bp
MNLFDSNGYGVSPAAPMVDSVPSSWAAKVRAGMSGDESGSSTGAETNCSA
QTASPIPAGSLGHVTHSGIVHGIGLGVGSPQSAAAVPAGNGTIVSPFGSR
NGADVGLSLPVAGMGLGNVGHYSPLGLGMGIGHGVGASVGLPAPPLVLSA
SAMDISMGNGGGGGAMSLSLARRPFDESPVAALNGSLDGSGRDAMDNGGG
GSSSSHSRNGASAGAGSGIGTGGGSGIGAGFDGAGEGGLSKDELLGAFPC
VRME
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mRNA from alignment at P-wetherbeei_contig5776:2484..3709+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5776.3.1 ID=mRNA_P-wetherbeei_contig5776.3.1|Name=mRNA_P-wetherbeei_contig5776.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1226bp|location=Sequence derived from alignment at P-wetherbeei_contig5776:2484..3709+ (Phaeothamnion wetherbeei SAG_119_79)
CCTCGGAAAATCTTTTGCGCACTATTCCGTTGGAAAAAGAGCACACGAGT
TCTGCCGTGTCTTTAAAGCAAGGACAGGCTGCACGCCCCCTGCAGCGAGG
CGCTGCGCCTGATCGTGCGTTGGCGTCGGCCCCGGAAACTTGAAAACCAT
ATATCCGCGCAAAACGCCAGTAGGGACTAGGGCGTGGGGCAACGGCTCCT
GCTGCCCCGCTAGCTGCAAAATGAATTTATTCGACAGTAATGGCTATGGT
GTTTCGCCGGCTGCGCGTAAGTTGTTTGATGATGTTTTTTCCTGCCATTT
CGAACTTGACTTTGAGCGCGCACGTGCACCGGGCACGCAATTCGTTATCT
TGACGATTCGTAGCAGTGGGTTCTTATTAAGGTGAATCAAACGTTCTGCG
TTCAGGCAGATGCTGGGCTTCGACTGATTCTTTGCCAAAAAACCAAAGCA
GTAGGTGAACGAAGACACCAGTATTGTTTCTTGTGTTCCCCCTCATGGTG
CGGCCATCAGCGATGGTGGACAGCGTGCCGTCTTCGTGGGCTGCCAAGGT
GCGCGCTGGCATGTCCGGCGACGAGAGCGGGAGCAGCACAGGCGCCGAAA
CCAACTGCAGCGCTCAAACGGCATCGCCAATCCCCGCCGGTTCCCTGGGG
CATGTGACACACAGCGGCATCGTGCACGGTATCGGCCTGGGCGTGGGATC
GCCCCAATCAGCCGCCGCGGTTCCTGCCGGCAACGGCACAATCGTATCTC
CGTTCGGGAGCCGGAACGGCGCGGACGTGGGCCTCTCGCTGCCCGTCGCG
GGCATGGGGCTGGGGAACGTCGGGCACTACAGCCCGCTGGGCCTCGGCAT
GGGCATAGGCCACGGCGTCGGCGCCTCGGTCGGGCTGCCGGCGCCGCCGC
TGGTGCTCTCGGCATCGGCAATGGACATCTCCATGGGGAACGGCGGTGGC
GGCGGCGCAATGTCCCTGTCGCTGGCGAGGCGGCCATTCGACGAATCGCC
GGTGGCGGCGCTCAACGGCTCCTTGGACGGCAGCGGCAGGGACGCAATGG
ATAACGGCGGCGGCGGCAGCAGCAGCAGCCACAGTAGAAACGGCGCCAGC
GCCGGCGCCGGCAGCGGCATCGGCACCGGCGGCGGCAGCGGCATCGGCGC
CGGCTTTGACGGCGCTGGAGAAGGCGGGCTGTCGAAAGACGAGCTCCTGG
GGGCCTTTCCCTGCGTCCGCATGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5776:2484..3709+

>mRNA_P-wetherbeei_contig5776.3.1 ID=mRNA_P-wetherbeei_contig5776.3.1|Name=mRNA_P-wetherbeei_contig5776.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=762bp|location=Sequence derived from alignment at P-wetherbeei_contig5776:2484..3709+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAATTTATTCGACAGTAATGGCTATGGTGTTTCGCCGGCTGCGCCGAT
GGTGGACAGCGTGCCGTCTTCGTGGGCTGCCAAGGTGCGCGCTGGCATGT
CCGGCGACGAGAGCGGGAGCAGCACAGGCGCCGAAACCAACTGCAGCGCT
CAAACGGCATCGCCAATCCCCGCCGGTTCCCTGGGGCATGTGACACACAG
CGGCATCGTGCACGGTATCGGCCTGGGCGTGGGATCGCCCCAATCAGCCG
CCGCGGTTCCTGCCGGCAACGGCACAATCGTATCTCCGTTCGGGAGCCGG
AACGGCGCGGACGTGGGCCTCTCGCTGCCCGTCGCGGGCATGGGGCTGGG
GAACGTCGGGCACTACAGCCCGCTGGGCCTCGGCATGGGCATAGGCCACG
GCGTCGGCGCCTCGGTCGGGCTGCCGGCGCCGCCGCTGGTGCTCTCGGCA
TCGGCAATGGACATCTCCATGGGGAACGGCGGTGGCGGCGGCGCAATGTC
CCTGTCGCTGGCGAGGCGGCCATTCGACGAATCGCCGGTGGCGGCGCTCA
ACGGCTCCTTGGACGGCAGCGGCAGGGACGCAATGGATAACGGCGGCGGC
GGCAGCAGCAGCAGCCACAGTAGAAACGGCGCCAGCGCCGGCGCCGGCAG
CGGCATCGGCACCGGCGGCGGCAGCGGCATCGGCGCCGGCTTTGACGGCG
CTGGAGAAGGCGGGCTGTCGAAAGACGAGCTCCTGGGGGCCTTTCCCTGC
GTCCGCATGGAG
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