mRNA_P-wetherbeei_contig57748.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57748.1.1
Unique NamemRNA_P-wetherbeei_contig57748.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57748.1.1 vs. uniprot
Match: UPI0019CCE929 (ABC transporter permease n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI0019CCE929)

HSP 1 Score: 286 bits (732), Expect = 1.100e-95
Identity = 153/168 (91.07%), Postives = 162/168 (96.43%), Query Frame = 1
Query:    4 SRLNAEWVGFTLSWYGKLFHNEKMLMAAWNSLLIGVTASAVATVFGTMAGYAMYRFRVRLLPVLVLAPIAIPEILMGVSLLIFFVLLNISLGLISIILSHIAFCIGFVAIVVRSRLAGMDESLTEAARDLGATPWKAFRLVTLPLIMPGVVAGALMAFTLSIDDFVIT 507
            SRLNAEWVGFT SWY KLFHNE+ML AA NSLLI +TASAV+TVFGTMAGYAMYRFR+RLLP+LVLAPIAIPEILMGVSLLIFFVLLNISLG++SI+LSHIAFCIGFVAIVVRSRLAGMDESL EAARDLGATPWKAFRLVTLP+IMPGVVAGALMAFTLSIDDFVIT
Sbjct:   34 SRLNAEWVGFTFSWYAKLFHNEQMLRAARNSLLIAITASAVSTVFGTMAGYAMYRFRMRLLPLLVLAPIAIPEILMGVSLLIFFVLLNISLGMVSIVLSHIAFCIGFVAIVVRSRLAGMDESLIEAARDLGATPWKAFRLVTLPMIMPGVVAGALMAFTLSIDDFVIT 201          
BLAST of mRNA_P-wetherbeei_contig57748.1.1 vs. uniprot
Match: A0A536UHQ8_9PROT (ABC transporter permease n=6 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536UHQ8_9PROT)

HSP 1 Score: 261 bits (666), Expect = 1.190e-85
Identity = 139/169 (82.25%), Postives = 153/169 (90.53%), Query Frame = 1
Query:    1 SSRLNAEWVGFTLSWYGKLFHNEKMLMAAWNSLLIGVTASAVATVFGTMAGYAMYRFRVRLLPVLVLAPIAIPEILMGVSLLIFFVLLNISLGLISIILSHIAFCIGFVAIVVRSRLAGMDESLTEAARDLGATPWKAFRLVTLPLIMPGVVAGALMAFTLSIDDFVIT 507
            +SRLNAEWVGFTL WY KLFHN++ML AA NSLLI + AS V+TV GTMAG AMYR++ RLLP+LVL PIAIPEILMGVSLLIFFVLLN +LGL S+ L+HIAFCIGFVAIVVR+RLAGMDESLTEAARD GATPW+AFR VTLPLIMPGV+AGALMAFTLSIDDFVIT
Sbjct:   33 NSRLNAEWVGFTLDWYDKLFHNQEMLSAAGNSLLIALVASLVSTVLGTMAGVAMYRYKTRLLPILVLTPIAIPEILMGVSLLIFFVLLNFTLGLASVALAHIAFCIGFVAIVVRARLAGMDESLTEAARDCGATPWQAFRHVTLPLIMPGVIAGALMAFTLSIDDFVIT 201          
BLAST of mRNA_P-wetherbeei_contig57748.1.1 vs. uniprot
Match: A0A127QEF5_9BURK (Binding--dependent transport system inner membrane component family protein n=5 Tax=Oxalobacteraceae TaxID=75682 RepID=A0A127QEF5_9BURK)

HSP 1 Score: 260 bits (664), Expect = 1.730e-85
Identity = 137/168 (81.55%), Postives = 156/168 (92.86%), Query Frame = 1
Query:    4 SRLNAEWVGFTLSWYGKLFHNEKMLMAAWNSLLIGVTASAVATVFGTMAGYAMYRFRVRLLPVLVLAPIAIPEILMGVSLLIFFVLLNISLGLISIILSHIAFCIGFVAIVVRSRLAGMDESLTEAARDLGATPWKAFRLVTLPLIMPGVVAGALMAFTLSIDDFVIT 507
            S+LNAEWVGFTL WY KLFHN++ML AA NSL+I + ASA AT  GTMAG+AM+R++++LLP+LVL PIAIPEIL+GVSLLIFFV+LNI+LGL+SI L+HIAFCIGFVAIVVRSRL+GMDESLTEAARD GATPW+AFRLVTLPLIMPGVVAGALMAFTLSIDDFVIT
Sbjct:   24 SQLNAEWVGFTLDWYRKLFHNDEMLRAAGNSLIIALVASAAATTLGTMAGFAMHRYKLKLLPLLVLTPIAIPEILVGVSLLIFFVMLNITLGLVSIALAHIAFCIGFVAIVVRSRLSGMDESLTEAARDCGATPWQAFRLVTLPLIMPGVVAGALMAFTLSIDDFVIT 191          
BLAST of mRNA_P-wetherbeei_contig57748.1.1 vs. uniprot
Match: A0A536TF57_9PROT (ABC transporter permease n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536TF57_9PROT)

HSP 1 Score: 258 bits (659), Expect = 1.630e-84
Identity = 137/168 (81.55%), Postives = 152/168 (90.48%), Query Frame = 1
Query:    4 SRLNAEWVGFTLSWYGKLFHNEKMLMAAWNSLLIGVTASAVATVFGTMAGYAMYRFRVRLLPVLVLAPIAIPEILMGVSLLIFFVLLNISLGLISIILSHIAFCIGFVAIVVRSRLAGMDESLTEAARDLGATPWKAFRLVTLPLIMPGVVAGALMAFTLSIDDFVIT 507
            SRLNAEWVGFTL WY KLFHN+ ML+AA NSL+I +TASAV+TV GTMAG A+YR+R+RLL +LVLAPIAIPEILMGVSLLIFFV L+ +LGL+SI L+HI FCIGFVAIVVR+RL GMDESLTEAARD GATPW AFR VTLPLIMPGV+AGALMAFTLSIDDFVIT
Sbjct:   34 SRLNAEWVGFTLDWYDKLFHNQDMLIAAGNSLIIALTASAVSTVLGTMAGVALYRYRMRLLSILVLAPIAIPEILMGVSLLIFFVFLDFTLGLVSITLAHITFCIGFVAIVVRARLVGMDESLTEAARDCGATPWNAFRYVTLPLIMPGVIAGALMAFTLSIDDFVIT 201          
BLAST of mRNA_P-wetherbeei_contig57748.1.1 vs. uniprot
Match: A0A536YIX8_9PROT (ABC transporter permease n=6 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536YIX8_9PROT)

HSP 1 Score: 256 bits (655), Expect = 5.600e-84
Identity = 135/169 (79.88%), Postives = 152/169 (89.94%), Query Frame = 1
Query:    1 SSRLNAEWVGFTLSWYGKLFHNEKMLMAAWNSLLIGVTASAVATVFGTMAGYAMYRFRVRLLPVLVLAPIAIPEILMGVSLLIFFVLLNISLGLISIILSHIAFCIGFVAIVVRSRLAGMDESLTEAARDLGATPWKAFRLVTLPLIMPGVVAGALMAFTLSIDDFVIT 507
            +SRLNAEWVGFTL WY KLFHN+ ML AA NSLLI +TASAV+TV GTMAG A+YR++ RLL +LVLAPIAIPEILMGVSLLIFFV+LN +LGLIS+ L+HI FCIGFVAIVVR+RL GMDE+LTEAARD GA+PW AFR +TLPLIMPGV+AGALMAFTLSIDDFVIT
Sbjct:   33 NSRLNAEWVGFTLDWYDKLFHNQDMLAAAGNSLLIALTASAVSTVLGTMAGVALYRYKARLLQILVLAPIAIPEILMGVSLLIFFVMLNFTLGLISVALAHITFCIGFVAIVVRARLTGMDETLTEAARDCGASPWNAFRYITLPLIMPGVIAGALMAFTLSIDDFVIT 201          
BLAST of mRNA_P-wetherbeei_contig57748.1.1 vs. uniprot
Match: G0A8H2_COLFT (Spermidine Putrescine ABC transporter permease component potC n=12 Tax=Collimonas TaxID=202907 RepID=G0A8H2_COLFT)

HSP 1 Score: 255 bits (652), Expect = 1.760e-83
Identity = 136/168 (80.95%), Postives = 156/168 (92.86%), Query Frame = 1
Query:    4 SRLNAEWVGFTLSWYGKLFHNEKMLMAAWNSLLIGVTASAVATVFGTMAGYAMYRFRVRLLPVLVLAPIAIPEILMGVSLLIFFVLLNISLGLISIILSHIAFCIGFVAIVVRSRLAGMDESLTEAARDLGATPWKAFRLVTLPLIMPGVVAGALMAFTLSIDDFVIT 507
            S+LNAEWVGFTL WY KLFHN++ML AA NSLLI + ASA +T+ GTMAG+AM+R++++LLP+LVL PIAIPEIL+GVSLLIFFV+LNI+LGL+SI L+HIAFCIGFVAIVVRSRL+GMDESLTEAARD GATP +AFRLVTLPLIMPGVVAGALMAFTLSIDDFVIT
Sbjct:   37 SQLNAEWVGFTLDWYRKLFHNDEMLRAAGNSLLIALVASAASTLLGTMAGFAMHRYKLKLLPLLVLTPIAIPEILVGVSLLIFFVMLNITLGLVSIALAHIAFCIGFVAIVVRSRLSGMDESLTEAARDCGATPMQAFRLVTLPLIMPGVVAGALMAFTLSIDDFVIT 204          
BLAST of mRNA_P-wetherbeei_contig57748.1.1 vs. uniprot
Match: A0A6N9R864_9RHOO (ABC transporter permease n=1 Tax=Aromatoleum sp. TaxID=2307007 RepID=A0A6N9R864_9RHOO)

HSP 1 Score: 254 bits (650), Expect = 3.020e-83
Identity = 136/168 (80.95%), Postives = 150/168 (89.29%), Query Frame = 1
Query:    4 SRLNAEWVGFTLSWYGKLFHNEKMLMAAWNSLLIGVTASAVATVFGTMAGYAMYRFRVRLLPVLVLAPIAIPEILMGVSLLIFFVLLNISLGLISIILSHIAFCIGFVAIVVRSRLAGMDESLTEAARDLGATPWKAFRLVTLPLIMPGVVAGALMAFTLSIDDFVIT 507
            SRLNAEWVGFTL WY KL HNE+ML AA NSLLI +  S V+T  GTMAG AMYR+R+RLLPVLVL PIAIPEILMGV+LLIFFVLL+ +LG++S+ L+HIAFCIGFVAIVVRSRLAGMDESLTEAARD GA PW+AFR VTLPLIMPGV+AGALMAFTLSIDDFVIT
Sbjct:   27 SRLNAEWVGFTLDWYRKLAHNEEMLTAAGNSLLIALMTSVVSTALGTMAGVAMYRYRLRLLPVLVLTPIAIPEILMGVALLIFFVLLDFTLGIVSVTLAHIAFCIGFVAIVVRSRLAGMDESLTEAARDCGAAPWQAFRYVTLPLIMPGVIAGALMAFTLSIDDFVIT 194          
BLAST of mRNA_P-wetherbeei_contig57748.1.1 vs. uniprot
Match: A0A317GVN8_9PROT (Spermidine/putrescine ABC transporter permease n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A317GVN8_9PROT)

HSP 1 Score: 253 bits (645), Expect = 1.850e-82
Identity = 132/168 (78.57%), Postives = 157/168 (93.45%), Query Frame = 1
Query:    4 SRLNAEWVGFTLSWYGKLFHNEKMLMAAWNSLLIGVTASAVATVFGTMAGYAMYRFRVRLLPVLVLAPIAIPEILMGVSLLIFFVLLNISLGLISIILSHIAFCIGFVAIVVRSRLAGMDESLTEAARDLGATPWKAFRLVTLPLIMPGVVAGALMAFTLSIDDFVIT 507
            SR+NA+W+GFT+ WY  LFH+E+ML AA NSLLIG+ ASA++TV GTMAGYAM+RFR+RLLP+L++APIAIPEILMGVSLLIF+V+++++LG+ SI+LSHIAFCIGFVAIVVR+RLAGMDESL EAARDLGATP +AFR +TLPLIMPGVVAGALMAFTLSIDDFVIT
Sbjct:   33 SRMNAQWIGFTVEWYRVLFHDEEMLTAARNSLLIGLVASAISTVLGTMAGYAMHRFRLRLLPLLIVAPIAIPEILMGVSLLIFYVMVSLTLGMTSIVLSHIAFCIGFVAIVVRARLAGMDESLVEAARDLGATPVEAFRRITLPLIMPGVVAGALMAFTLSIDDFVIT 200          
BLAST of mRNA_P-wetherbeei_contig57748.1.1 vs. uniprot
Match: A0A537A5J8_9PROT (ABC transporter permease n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537A5J8_9PROT)

HSP 1 Score: 251 bits (640), Expect = 1.380e-81
Identity = 135/169 (79.88%), Postives = 153/169 (90.53%), Query Frame = 1
Query:    1 SSRLNAEWVGFTLSWYGKLFHNEKMLMAAWNSLLIGVTASAVATVFGTMAGYAMYRFRVRLLPVLVLAPIAIPEILMGVSLLIFFVLLNISLGLISIILSHIAFCIGFVAIVVRSRLAGMDESLTEAARDLGATPWKAFRLVTLPLIMPGVVAGALMAFTLSIDDFVIT 507
            +SRLNAEWVGFT  WY +L  +E ML AA NSLLIG++AS V+TV GTMAG AMYR+R RLLPVLVLAPIAIPEILMGVSLLIFFVLLN++LGL+S+ L+HIAFCIGFVAIVVR+RLAGMDE+LTEAARD GA+P +AFR +TLPLIMPGV+AGALMAFTLSIDDFVIT
Sbjct:   41 NSRLNAEWVGFTFDWYRQLAEDENMLTAAGNSLLIGISASLVSTVLGTMAGVAMYRYRQRLLPVLVLAPIAIPEILMGVSLLIFFVLLNLTLGLVSVALAHIAFCIGFVAIVVRARLAGMDEALTEAARDCGASPLQAFRYITLPLIMPGVIAGALMAFTLSIDDFVIT 209          
BLAST of mRNA_P-wetherbeei_contig57748.1.1 vs. uniprot
Match: A0A3D3PSC3_9BURK (Spermidine/putrescine ABC transporter permease n=2 Tax=Oxalobacteraceae bacterium TaxID=1871070 RepID=A0A3D3PSC3_9BURK)

HSP 1 Score: 250 bits (639), Expect = 1.460e-81
Identity = 137/168 (81.55%), Postives = 150/168 (89.29%), Query Frame = 1
Query:    4 SRLNAEWVGFTLSWYGKLFHNEKMLMAAWNSLLIGVTASAVATVFGTMAGYAMYRFRVRLLPVLVLAPIAIPEILMGVSLLIFFVLLNISLGLISIILSHIAFCIGFVAIVVRSRLAGMDESLTEAARDLGATPWKAFRLVTLPLIMPGVVAGALMAFTLSIDDFVIT 507
            S+LNAEWVGFT  WY  LFH++ ML AA NSL I + ASAVATV GTMAG+AMYR+  RLL VLVL PIAIPEIL+GVSLLIFFV+LN++LGL+SI L+HIAFCIGFVAIVVRSRL+GMDESLTEAARD GATPW AFRLVTLPLIMPGVVAGALMAFTLSIDDFVIT
Sbjct:   34 SKLNAEWVGFTFDWYRLLFHDDGMLQAAGNSLGIALVASAVATVLGTMAGFAMYRYHHRLLQVLVLTPIAIPEILVGVSLLIFFVMLNMTLGLLSITLAHIAFCIGFVAIVVRSRLSGMDESLTEAARDCGATPWLAFRLVTLPLIMPGVVAGALMAFTLSIDDFVIT 201          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57748.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019CCE9291.100e-9591.07ABC transporter permease n=1 Tax=Prolixibacteracea... [more]
A0A536UHQ8_9PROT1.190e-8582.25ABC transporter permease n=6 Tax=Betaproteobacteri... [more]
A0A127QEF5_9BURK1.730e-8581.55Binding--dependent transport system inner membrane... [more]
A0A536TF57_9PROT1.630e-8481.55ABC transporter permease n=1 Tax=Betaproteobacteri... [more]
A0A536YIX8_9PROT5.600e-8479.88ABC transporter permease n=6 Tax=Betaproteobacteri... [more]
G0A8H2_COLFT1.760e-8380.95Spermidine Putrescine ABC transporter permease com... [more]
A0A6N9R864_9RHOO3.020e-8380.95ABC transporter permease n=1 Tax=Aromatoleum sp. T... [more]
A0A317GVN8_9PROT1.850e-8278.57Spermidine/putrescine ABC transporter permease n=1... [more]
A0A537A5J8_9PROT1.380e-8179.88ABC transporter permease n=1 Tax=Betaproteobacteri... [more]
A0A3D3PSC3_9BURK1.460e-8181.55Spermidine/putrescine ABC transporter permease n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57748contigP-wetherbeei_contig57748:1..507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1005048.CFU_0649
Preferred namepotC
PFAMsBPD_transp_1
Model size507
Max annot lvl28216|Betaproteobacteria
KEGG koko:K11070,ko:K11074
KEGG TC3.A.1.11.1,3.A.1.11.2
KEGG Pathwayko02010,map02010
KEGG ModuleM00299,M00300
Hectar predicted targeting categorysignal anchor
Exons1
Evalue2.89e-84
EggNOG OGsCOG1177@1|root,COG1177@2|Bacteria,1MVC5@1224|Proteobacteria,2VHYY@28216|Betaproteobacteria,473TP@75682|Oxalobacteraceae
DescriptionBinding-protein-dependent transport system inner membrane component
Cds size507
COG categoryP
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186856.0623827-CDS-P-wetherbeei_contig57748:0..5071683186856.0623827-CDS-P-wetherbeei_contig57748:0..507Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57748 1..507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57748.1.1prot_P-wetherbeei_contig57748.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57748 1..507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57748.1.1

>prot_P-wetherbeei_contig57748.1.1 ID=prot_P-wetherbeei_contig57748.1.1|Name=mRNA_P-wetherbeei_contig57748.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
SSRLNAEWVGFTLSWYGKLFHNEKMLMAAWNSLLIGVTASAVATVFGTMA
GYAMYRFRVRLLPVLVLAPIAIPEILMGVSLLIFFVLLNISLGLISIILS
HIAFCIGFVAIVVRSRLAGMDESLTEAARDLGATPWKAFRLVTLPLIMPG
VVAGALMAFTLSIDDFVIT
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mRNA from alignment at P-wetherbeei_contig57748:1..507-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57748.1.1 ID=mRNA_P-wetherbeei_contig57748.1.1|Name=mRNA_P-wetherbeei_contig57748.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig57748:1..507- (Phaeothamnion wetherbeei SAG_119_79)
TCTTCCCGGCTCAACGCCGAATGGGTGGGATTCACGCTGTCCTGGTACGG CAAGCTGTTCCACAACGAGAAGATGCTCATGGCGGCGTGGAATTCGCTGC TGATCGGCGTCACCGCGAGCGCGGTGGCCACCGTATTCGGCACCATGGCC GGCTATGCGATGTATCGCTTCCGGGTGCGCCTGCTGCCGGTGCTGGTGCT GGCGCCGATCGCGATTCCGGAAATCCTCATGGGCGTGTCGCTGCTGATTT TCTTCGTACTGCTGAATATCTCGCTGGGCCTGATTTCCATCATCCTGTCG CATATCGCGTTTTGCATCGGCTTCGTTGCCATCGTCGTGCGTTCGCGCCT AGCCGGCATGGACGAAAGCCTGACCGAGGCGGCGCGCGATCTGGGCGCGA CGCCATGGAAGGCGTTCCGGCTGGTTACGCTGCCGCTGATCATGCCAGGC GTGGTGGCCGGCGCGCTGATGGCGTTTACGCTGTCGATCGATGATTTCGT GATCACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57748:1..507-

>mRNA_P-wetherbeei_contig57748.1.1 ID=mRNA_P-wetherbeei_contig57748.1.1|Name=mRNA_P-wetherbeei_contig57748.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig57748:1..507- (Phaeothamnion wetherbeei SAG_119_79)
TCTTCCCGGCTCAACGCCGAATGGGTGGGATTCACGCTGTCCTGGTACGG
CAAGCTGTTCCACAACGAGAAGATGCTCATGGCGGCGTGGAATTCGCTGC
TGATCGGCGTCACCGCGAGCGCGGTGGCCACCGTATTCGGCACCATGGCC
GGCTATGCGATGTATCGCTTCCGGGTGCGCCTGCTGCCGGTGCTGGTGCT
GGCGCCGATCGCGATTCCGGAAATCCTCATGGGCGTGTCGCTGCTGATTT
TCTTCGTACTGCTGAATATCTCGCTGGGCCTGATTTCCATCATCCTGTCG
CATATCGCGTTTTGCATCGGCTTCGTTGCCATCGTCGTGCGTTCGCGCCT
AGCCGGCATGGACGAAAGCCTGACCGAGGCGGCGCGCGATCTGGGCGCGA
CGCCATGGAAGGCGTTCCGGCTGGTTACGCTGCCGCTGATCATGCCAGGC
GTGGTGGCCGGCGCGCTGATGGCGTTTACGCTGTCGATCGATGATTTCGT
GATCACG
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