mRNA_P-wetherbeei_contig57724.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57724.1.1
Unique NamemRNA_P-wetherbeei_contig57724.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57724.1.1 vs. uniprot
Match: UPI0019AC71D9 (Cytochrome c n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI0019AC71D9)

HSP 1 Score: 159 bits (401), Expect = 2.120e-48
Identity = 74/110 (67.27%), Postives = 87/110 (79.09%), Query Frame = 1
Query:    1 MNKLWIAIVAVAGVXXXXXXXXXXXXXKGKEKSALCASCHGPDGNTPIMPEYPRLAGQPHDYLEKALRDYKSGKRKNPLMAPMAQTLSKEDIKDLAAYYSSLSGDLKVKY 330
            MN  WIA+VA AG+             KGKEK+A+C++CHG DGNTP+ P+YP++A QP D+LEKALRDYKSGKRKNPLM P AQ LSK+D+KDLAAYYSSLSGDLKVKY
Sbjct:    1 MNTFWIALVAAAGLAATGTAVAGGDAAKGKEKAAVCSACHGADGNTPLTPDYPKIASQPADFLEKALRDYKSGKRKNPLMGPQAQNLSKQDMKDLAAYYSSLSGDLKVKY 110          
BLAST of mRNA_P-wetherbeei_contig57724.1.1 vs. uniprot
Match: A0A3N5EXG8_9BURK (Cytochrome c n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A3N5EXG8_9BURK)

HSP 1 Score: 107 bits (267), Expect = 5.410e-28
Identity = 51/82 (62.20%), Postives = 66/82 (80.49%), Query Frame = 1
Query:   85 GKEKS-ALCASCHGPDGNTPIMPEYPRLAGQPHDYLEKALRDYKSGKRKNPLMAPMAQTLSKEDIKDLAAYYSSLSGDLKVK 327
            GK K+ ++CA+CHG DGNTPI P YP+LAGQ  D+LE+AL DYKSG RKN +MA  +Q LS+ DI++LAAYY+SL G L++K
Sbjct:   29 GKAKAESVCAACHGKDGNTPIDPSYPKLAGQYRDFLERALLDYKSGARKNAIMAGQSQALSRADIENLAAYYASLPGSLRIK 110          
BLAST of mRNA_P-wetherbeei_contig57724.1.1 vs. uniprot
Match: A0A536SNL1_9PROT (Cytochrome c n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SNL1_9PROT)

HSP 1 Score: 106 bits (265), Expect = 9.700e-28
Identity = 49/80 (61.25%), Postives = 61/80 (76.25%), Query Frame = 1
Query:   85 GKEKSALCASCHGPDGNTPIMPEYPRLAGQPHDYLEKALRDYKSGKRKNPLMAPMAQTLSKEDIKDLAAYYSSLSGDLKV 324
            GK+KS  CA+CHGPDGN+P  P++PRLAGQ +DYL KALRDY+SG RKNP+MA     L+ +D+ DLAA+YS   G L V
Sbjct:   26 GKQKSQACAACHGPDGNSPTGPDFPRLAGQHYDYLLKALRDYRSGARKNPIMAAQVGNLNPQDMADLAAFYSGQKGVLHV 105          
BLAST of mRNA_P-wetherbeei_contig57724.1.1 vs. uniprot
Match: A0A8I1R8L2_9BURK (Cytochrome c n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A8I1R8L2_9BURK)

HSP 1 Score: 105 bits (263), Expect = 2.600e-27
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 1
Query:   85 GKEKSA-LCASCHGPDGNTPIMPEYPRLAGQPHDYLEKALRDYKSGKRKNPLMAPMAQTLSKEDIKDLAAYYSSLSGDLKVK 327
            G EK+A +CA+CHG DGNTPI P YP+LAGQ  DYLE+AL DY+SG RKNP+M   A+ LS+ DI++LAAYY+SL G+L  +
Sbjct:   35 GAEKAAQVCAACHGKDGNTPIDPTYPKLAGQHADYLERALLDYQSGHRKNPIMGAQAKQLSRADIRNLAAYYASLPGNLSSR 116          
BLAST of mRNA_P-wetherbeei_contig57724.1.1 vs. uniprot
Match: A0A536XVU4_9PROT (Cytochrome c n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536XVU4_9PROT)

HSP 1 Score: 105 bits (262), Expect = 2.690e-27
Identity = 49/80 (61.25%), Postives = 59/80 (73.75%), Query Frame = 1
Query:   85 GKEKSALCASCHGPDGNTPIMPEYPRLAGQPHDYLEKALRDYKSGKRKNPLMAPMAQTLSKEDIKDLAAYYSSLSGDLKV 324
            GK KS  CA+CHGPDGN+P  P++PRLAGQ +DYL KALRDYKSG RKNP+M      L+ +D+ DLAA+YS   G L V
Sbjct:   25 GKPKSQACAACHGPDGNSPTSPDFPRLAGQHYDYLLKALRDYKSGARKNPIMGAQVGGLNPQDMADLAAFYSRQRGSLHV 104          
BLAST of mRNA_P-wetherbeei_contig57724.1.1 vs. uniprot
Match: UPI00197D7786 (cytochrome c n=1 Tax=Niveibacterium TaxID=1769726 RepID=UPI00197D7786)

HSP 1 Score: 104 bits (260), Expect = 5.270e-27
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 1
Query:   82 KGKEKSALCASCHGPDGNTPIMPEYPRLAGQPHDYLEKALRDYKSGKRKNPLMAPMAQTLSKEDIKDLAAYYSSLSGDLKVK 327
            KGKEKS +CA+CHG DGN+   P++P+LAGQ  DY+ +AL DYK+GKRKNP+M  MA  LSKED+ DLAAY+S+  G + VK
Sbjct:   24 KGKEKSTVCAACHGADGNS-ASPDFPKLAGQHEDYIVRALTDYKAGKRKNPIMMGMAAPLSKEDVADLAAYFSAQKGLVIVK 104          
BLAST of mRNA_P-wetherbeei_contig57724.1.1 vs. uniprot
Match: A0A536TY35_9PROT (Cytochrome c n=4 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536TY35_9PROT)

HSP 1 Score: 103 bits (258), Expect = 1.090e-26
Identity = 49/80 (61.25%), Postives = 59/80 (73.75%), Query Frame = 1
Query:   85 GKEKSALCASCHGPDGNTPIMPEYPRLAGQPHDYLEKALRDYKSGKRKNPLMAPMAQTLSKEDIKDLAAYYSSLSGDLKV 324
            GK KS  CA+CHGPDGN+P  P++PRLAGQ +DYL KALRDYKSG RKNP+M      L+ +D+ DLAA+YS   G L V
Sbjct:   25 GKLKSQTCAACHGPDGNSPAGPDFPRLAGQYYDYLLKALRDYKSGARKNPIMGGQVGGLNSQDMADLAAFYSRQKGSLHV 104          
BLAST of mRNA_P-wetherbeei_contig57724.1.1 vs. uniprot
Match: A0A5C7EYP6_9PROT (Cytochrome c n=1 Tax=Pelomicrobium methylotrophicum TaxID=2602750 RepID=A0A5C7EYP6_9PROT)

HSP 1 Score: 103 bits (256), Expect = 2.530e-26
Identity = 51/109 (46.79%), Postives = 69/109 (63.30%), Query Frame = 1
Query:    1 MNKLWIAIVAVAGVXXXXXXXXXXXXXKGKEKSALCASCHGPDGNTPIMPEYPRLAGQPHDYLEKALRDYKSGKRKNPLMAPMAQTLSKEDIKDLAAYYSSLSGDLKVK 327
            M K+W   VA+ G+               K  + +CA+CHGP G+ P+ P+YPRLAGQ  DYL KAL DYK+G R+NP+M   A  LS+ DI++LAAY++S  G L+VK
Sbjct:    1 MKKIW--AVALVGLLGAVQACAADPEAGKKIATEVCAACHGPTGDAPMTPQYPRLAGQHRDYLAKALTDYKTGARQNPIMQGFAANLSERDIENLAAYFASQKGSLRVK 107          
BLAST of mRNA_P-wetherbeei_contig57724.1.1 vs. uniprot
Match: A0A840BN88_9RHOO (Cytochrome c553 n=1 Tax=Niveibacterium umoris TaxID=1193620 RepID=A0A840BN88_9RHOO)

HSP 1 Score: 102 bits (255), Expect = 3.390e-26
Identity = 47/77 (61.04%), Postives = 62/77 (80.52%), Query Frame = 1
Query:   82 KGKEKSALCASCHGPDGNTPIMPEYPRLAGQPHDYLEKALRDYKSGKRKNPLMAPMAQTLSKEDIKDLAAYYSSLSG 312
            KGKEKSA+CA+CHG DGN+   P++P+LAGQ  DY+ +AL DYK+GKRKNP+M  MA  L+KED+ D+AAY+S+  G
Sbjct:   28 KGKEKSAMCAACHGADGNS-ASPDFPKLAGQHEDYIVRALTDYKAGKRKNPIMMGMAAPLTKEDVADVAAYFSAQKG 103          
BLAST of mRNA_P-wetherbeei_contig57724.1.1 vs. uniprot
Match: A0A1F4E4E4_9PROT (Cytochrome C n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4E4E4_9PROT)

HSP 1 Score: 102 bits (254), Expect = 4.420e-26
Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 1
Query:   85 GKEKSALCASCHGPDGNTPIMPEYPRLAGQPHDYLEKALRDYKSGKRKNPLMAPMAQTLSKEDIKDLAAYYSSLSGDLKVKY 330
            GKEKS  CA+CHGPDGN+   P++P+LAGQ  DYL K L DYKSG RKN +MAP   +LSK DI DLAA+YS   G L VKY
Sbjct:   27 GKEKSKTCAACHGPDGNSQA-PDFPKLAGQHEDYLVKTLNDYKSGARKNAIMAPQTASLSKRDIADLAAFYSQQKG-LVVKY 106          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57724.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019AC71D92.120e-4867.27Cytochrome c n=1 Tax=Prolixibacteraceae bacterium ... [more]
A0A3N5EXG8_9BURK5.410e-2862.20Cytochrome c n=1 Tax=Burkholderiales bacterium Tax... [more]
A0A536SNL1_9PROT9.700e-2861.25Cytochrome c n=1 Tax=Betaproteobacteria bacterium ... [more]
A0A8I1R8L2_9BURK2.600e-2762.20Cytochrome c n=1 Tax=Burkholderiales bacterium Tax... [more]
A0A536XVU4_9PROT2.690e-2761.25Cytochrome c n=1 Tax=Betaproteobacteria bacterium ... [more]
UPI00197D77865.270e-2760.98cytochrome c n=1 Tax=Niveibacterium TaxID=1769726 ... [more]
A0A536TY35_9PROT1.090e-2661.25Cytochrome c n=4 Tax=Betaproteobacteria bacterium ... [more]
A0A5C7EYP6_9PROT2.530e-2646.79Cytochrome c n=1 Tax=Pelomicrobium methylotrophicu... [more]
A0A840BN88_9RHOO3.390e-2661.04Cytochrome c553 n=1 Tax=Niveibacterium umoris TaxI... [more]
A0A1F4E4E4_9PROT4.420e-2663.41Cytochrome C n=1 Tax=Betaproteobacteria bacterium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57724contigP-wetherbeei_contig57724:26..358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1288494.EBAPG3_8960
PFAMsCytochrom_C,Cytochrome_CBB3
Model size333
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue8.86e-26
EggNOG OGsCOG2863@1|root,COG2863@2|Bacteria,1N7W9@1224|Proteobacteria,2VUTK@28216|Betaproteobacteria,373BI@32003|Nitrosomonadales
DescriptionCytochrome c, class I
Cds size333
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186855.684811-CDS-P-wetherbeei_contig57724:25..3581683186855.684811-CDS-P-wetherbeei_contig57724:25..358Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57724 26..358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57724.1.1prot_P-wetherbeei_contig57724.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57724 26..358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57724.1.1

>prot_P-wetherbeei_contig57724.1.1 ID=prot_P-wetherbeei_contig57724.1.1|Name=mRNA_P-wetherbeei_contig57724.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
MNKLWIAIVAVAGVVVAGNAVAGGNVAKGKEKSALCASCHGPDGNTPIMP
EYPRLAGQPHDYLEKALRDYKSGKRKNPLMAPMAQTLSKEDIKDLAAYYS
SLSGDLKVKY*
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mRNA from alignment at P-wetherbeei_contig57724:26..358+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57724.1.1 ID=mRNA_P-wetherbeei_contig57724.1.1|Name=mRNA_P-wetherbeei_contig57724.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig57724:26..358+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACAAGCTGTGGATTGCGATAGTCGCCGTAGCGGGGGTGGTCGTTGC GGGCAACGCGGTGGCAGGCGGCAATGTGGCGAAAGGCAAGGAAAAATCCG CGCTGTGCGCCAGCTGCCATGGTCCGGACGGCAATACGCCGATCATGCCG GAATATCCGCGTTTGGCGGGCCAGCCGCATGACTATCTGGAGAAGGCCTT GCGCGATTACAAATCGGGCAAGCGCAAGAATCCGCTGATGGCCCCGATGG CGCAGACCCTGTCCAAGGAGGACATCAAGGATCTGGCTGCCTATTACTCC AGCCTGAGCGGAGACCTCAAGGTCAAATACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57724:26..358+

>mRNA_P-wetherbeei_contig57724.1.1 ID=mRNA_P-wetherbeei_contig57724.1.1|Name=mRNA_P-wetherbeei_contig57724.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig57724:26..358+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACAAGCTGTGGATTGCGATAGTCGCCGTAGCGGGGGTGGTCGTTGC
GGGCAACGCGGTGGCAGGCGGCAATGTGGCGAAAGGCAAGGAAAAATCCG
CGCTGTGCGCCAGCTGCCATGGTCCGGACGGCAATACGCCGATCATGCCG
GAATATCCGCGTTTGGCGGGCCAGCCGCATGACTATCTGGAGAAGGCCTT
GCGCGATTACAAATCGGGCAAGCGCAAGAATCCGCTGATGGCCCCGATGG
CGCAGACCCTGTCCAAGGAGGACATCAAGGATCTGGCTGCCTATTACTCC
AGCCTGAGCGGAGACCTCAAGGTCAAATACTGA
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