mRNA_P-wetherbeei_contig577.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig577.4.1
Unique NamemRNA_P-wetherbeei_contig577.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig577.4.1 vs. uniprot
Match: D8LE07_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE07_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.040e-20
Identity = 73/200 (36.50%), Postives = 98/200 (49.00%), Query Frame = 1 
Query:    1 ESLGAVVDLAARRGAAVTVFPEAARTNGDGVLEFSRVLDGLV--------GSTGLQGIHLAGFSYRAGGXXXXG----FAPVHPVGSLARQLFWMCFSVSGRGSRVGRGSGFD---------ARLSACVSVPAAGAAVTATPRAAATWTERVRELVAGAAGKGCLALSRDDAASFARYWDLLRRDDRDAAAGWAEKRKKH 537
            ++L  +V     R  ++ V PEAARTNG GVL+ SRV D L         G      +HL  FSY  GG    G    F+P  PVGS  RQLFW+C  +S     V   +  D         +R+S+  S    G +   TP   A WTE +R L+A   G+  LAL   D A+F  Y+DL+ + D+  AA  A+ R K+
Sbjct:  224 QTLRDIVTAPRGRTRSIVVAPEAARTNGAGVLQLSRVFDSLAHPPSGDTSGYVAQPAVHLVTFSYNRGGRGDGGGRGGFSPAQPVGSALRQLFWLCSQLSRTTMEVSWVAAADVPRFPMRAISRISSDPSRKFPGPSQLQTP---AAWTEEIRSLMAAMIGRPKLALGSKDFATFVAYYDLVSKGDKAGAAALADSRSKN 420
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BLAST of mRNA_P-wetherbeei_contig577.4.1 vs. uniprot
Match: A0A4D9CRK5_9STRA (PlsC domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CRK5_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.310e-6
Identity = 61/191 (31.94%), Postives = 83/191 (43.46%), Query Frame = 1 
Query:    1 ESLGAVVDLAARRGAAVTVFPEAARTNGDGVLEFSR-VLDGLVGSTGLQG------------IHLAGFSYRAGGXXXXGFAPVHPVGSLARQLFWMCFSVSGRGSRVGRGSGFDARLSACVSVPAAGAAVTATPRAAATWTERVRELVAGAAGKGCLALSRDDAASFARYWDLLRRDDRDAAAGWAEKRKK 534
            ++L ++   A R+G AV VFPE AR+NGDGVL F R VLDG        G            +H+ GFS   G        P H VGS+    F     +  R       S   A      S  A G+    + R     +E +R L+A   G+  L L  +D  SF +Y+  +R  D + AA  A  R+K
Sbjct:  228 QALSSLAAEAKRQGRAVVVFPETARSNGDGVLVFQRGVLDGADAKEAKGGKITGGERGGGVNVHIFGFSAPKGEVL-----PTHTVGSI----FGFYLQLLSRWRTTVNVSYVGAPDLLLQSTSAKGSG--GSSRTPVYSSEELRSLLANMLGRPKLNLGYEDFCSFRKYYAAIRAGDEEGAAALARAREK 407
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig577.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LE07_ECTSI1.040e-2036.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9CRK5_9STRA3.310e-631.94PlsC domain-containing protein n=2 Tax=Monodopsida... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig577contigP-wetherbeei_contig577:8282..9334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LE07
PFAMsAcyltransferase
Model size540
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.7e-21
EggNOG OGs28MBJ@1|root,2QTUZ@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_004520.1
Cds size540
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186855.460791-CDS-P-wetherbeei_contig577:8281..84901683186855.460791-CDS-P-wetherbeei_contig577:8281..8490Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig577 8282..8490 -
1683186855.469763-CDS-P-wetherbeei_contig577:9003..93341683186855.469763-CDS-P-wetherbeei_contig577:9003..9334Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig577 9004..9334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig577.4.1prot_P-wetherbeei_contig577.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig577 8282..9334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig577.4.1

>prot_P-wetherbeei_contig577.4.1 ID=prot_P-wetherbeei_contig577.4.1|Name=mRNA_P-wetherbeei_contig577.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=180bp
ESLGAVVDLAARRGAAVTVFPEAARTNGDGVLEFSRVLDGLVGSTGLQGI
HLAGFSYRAGGGGGGGFAPVHPVGSLARQLFWMCFSVSGRGSRVGRGSGF
DARLSACVSVPAAGAAVTATPRAAATWTERVRELVAGAAGKGCLALSRDD
AASFARYWDLLRRDDRDAAAGWAEKRKKH*
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mRNA from alignment at P-wetherbeei_contig577:8282..9334-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig577.4.1 ID=mRNA_P-wetherbeei_contig577.4.1|Name=mRNA_P-wetherbeei_contig577.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1053bp|location=Sequence derived from alignment at P-wetherbeei_contig577:8282..9334- (Phaeothamnion wetherbeei SAG_119_79)
GAGTCCCTCGGGGCCGTCGTCGACCTCGCCGCGCGCCGCGGCGCAGCTGT
GACCGTTTTCCCCGAGGCTGCTCGCACCAACGGCGACGGCGTGCTGGAGT
TCTCTCGGGTCCTGGATGGCCTCGTCGGGTCCACGGGGCTTCAGGGGATC
CACTTGGCAGGGTTTTCGTATCGGGCGGGCGGCGGCGGCGGCGGAGGCTT
TGCTCCCGTCCACCCCGTGGGGTCGCTGGCGCGACAGCTCTTCTGGATGT
GTTTCAGCGTGAGTGGACGAGGCAGCAGGGTAGGGAGGGGTTCGGGTTTC
GATGCCCGTCTCTCGGCGTGTGTCTCCGTTCGTTGTCCTGTGTTTTATGG
CGCATTTGGAATTGCATTTGGGGTTCGTGGGTGGTTCCACTGAAACGTTT
TGCCGTTCGACCCCCTTTTTCGGTCACGTTGCTTTAGCAAGCATCCTCCT
CTAATTCTTTTTTGGACCGTGTTCAGGCGCGGCAGCGCCTGTTTGTTCCT
CTCATCTCAGTTAACGATTCTCACCCGTTGCTGCGTAGAAATGTTTTTGC
ATGTTTCTTTTCTTGTAACATTGAGACTCGGCCAAGGCATGGCAGGATCA
TTGCAGGTCTTATTTTCTTCTCACCGACTCCTGCCGTCGCCGGCTCCCTC
CAAACCCTTTTGCATGGAGCAGTTTTGGCCTAGTACAATGACGGTAACTT
TTCTGGACGAAGAGTATGTGCCACCACATCCGTTGTTGGCCAGCATTGCC
GTCGGCCCCGCCGTTCGGACGGCCGCCGCCGCCGGGGCCAGCGCCTCCAC
CCCGACTCTGCAACCATCACCGGCAGCGCCGACGGCGGTTACAGCGGCGG
CCGGGGCGGCAGTTACGGCGACGCCGAGGGCGGCGGCAACGTGGACCGAG
CGAGTTCGCGAGCTGGTGGCGGGGGCGGCGGGCAAGGGGTGCCTGGCGTT
GTCGCGCGATGATGCGGCGTCGTTTGCTCGGTACTGGGACTTGCTTCGTC
GCGATGACAGAGACGCGGCGGCGGGATGGGCCGAAAAGCGGAAAAAGCAC
TGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig577:8282..9334-

>mRNA_P-wetherbeei_contig577.4.1 ID=mRNA_P-wetherbeei_contig577.4.1|Name=mRNA_P-wetherbeei_contig577.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig577:8282..9334- (Phaeothamnion wetherbeei SAG_119_79)
GAGTCCCTCGGGGCCGTCGTCGACCTCGCCGCGCGCCGCGGCGCAGCTGT
GACCGTTTTCCCCGAGGCTGCTCGCACCAACGGCGACGGCGTGCTGGAGT
TCTCTCGGGTCCTGGATGGCCTCGTCGGGTCCACGGGGCTTCAGGGGATC
CACTTGGCAGGGTTTTCGTATCGGGCGGGCGGCGGCGGCGGCGGAGGCTT
TGCTCCCGTCCACCCCGTGGGGTCGCTGGCGCGACAGCTCTTCTGGATGT
GTTTCAGCGTGAGTGGACGAGGCAGCAGGGTAGGGAGGGGTTCGGGTTTC
GATGCCCGTCTCTCGGCGTGTGTCTCCGTTCCGGCGGCCGGGGCGGCAGT
TACGGCGACGCCGAGGGCGGCGGCAACGTGGACCGAGCGAGTTCGCGAGC
TGGTGGCGGGGGCGGCGGGCAAGGGGTGCCTGGCGTTGTCGCGCGATGAT
GCGGCGTCGTTTGCTCGGTACTGGGACTTGCTTCGTCGCGATGACAGAGA
CGCGGCGGCGGGATGGGCCGAAAAGCGGAAAAAGCACTGA
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