mRNA_P-wetherbeei_contig57664.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57664.1.1
Unique NamemRNA_P-wetherbeei_contig57664.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57664.1.1 vs. uniprot
Match: UPI001BAA874F (ABC transporter substrate-binding protein n=9 Tax=Bradyrhizobium TaxID=374 RepID=UPI001BAA874F)

HSP 1 Score: 197 bits (501), Expect = 6.390e-59
Identity = 91/99 (91.92%), Postives = 96/99 (96.97%), Query Frame = 1 
Query:    1 LSAGDLMNIYFNSQNIPTPNRMNWKDAETDEWLKLGRSALTEADRAKYYALVQQKVMQEHLWMPVLNINMDEVVNKKIKGARPHMIYQNTFYKGLDTSL 297
            LSAGDLMNIYF+S+NIPTPNRMNWKDAETDEWLKLGRSALTE DRAKYYA+VQQKVMQEHLW+PVLNINMD+V NKKIKGARPHMIYQNTFYKGLD SL
Sbjct:  422 LSAGDLMNIYFDSRNIPTPNRMNWKDAETDEWLKLGRSALTEPDRAKYYAMVQQKVMQEHLWIPVLNINMDQVANKKIKGARPHMIYQNTFYKGLDASL 520
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BLAST of mRNA_P-wetherbeei_contig57664.1.1 vs. uniprot
Match: A0A521LRF2_9HYPH (ABC transporter substrate-binding protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521LRF2_9HYPH)

HSP 1 Score: 195 bits (495), Expect = 4.930e-58
Identity = 88/99 (88.89%), Postives = 97/99 (97.98%), Query Frame = 1 
Query:    1 LSAGDLMNIYFNSQNIPTPNRMNWKDAETDEWLKLGRSALTEADRAKYYALVQQKVMQEHLWMPVLNINMDEVVNKKIKGARPHMIYQNTFYKGLDTSL 297
            LSAGDLMNIYF+S+NIPTPNRMNWKDAETDEWLKLGR+ALTEADRAKYYA+VQQKVM+EHLW+PVLNINMDEVVNKK+KGARPHM+YQNTFYKGLD + 
Sbjct:  422 LSAGDLMNIYFDSKNIPTPNRMNWKDAETDEWLKLGRAALTEADRAKYYAMVQQKVMREHLWIPVLNINMDEVVNKKLKGARPHMLYQNTFYKGLDATF 520
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BLAST of mRNA_P-wetherbeei_contig57664.1.1 vs. uniprot
Match: UPI001BABC1D5 (ABC transporter substrate-binding protein n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=UPI001BABC1D5)

HSP 1 Score: 194 bits (493), Expect = 9.740e-58
Identity = 89/99 (89.90%), Postives = 96/99 (96.97%), Query Frame = 1 
Query:    1 LSAGDLMNIYFNSQNIPTPNRMNWKDAETDEWLKLGRSALTEADRAKYYALVQQKVMQEHLWMPVLNINMDEVVNKKIKGARPHMIYQNTFYKGLDTSL 297
            LSAGDLMNIYF+S+NIPTPNRMNWKDAETDEWLK GRSALTE+DRAKYYA+VQQKVM+EHLW+PVLNINMD+V NKKIKGARPHMIYQNTFYKGLD SL
Sbjct:  422 LSAGDLMNIYFDSRNIPTPNRMNWKDAETDEWLKQGRSALTESDRAKYYAMVQQKVMKEHLWIPVLNINMDQVANKKIKGARPHMIYQNTFYKGLDVSL 520
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BLAST of mRNA_P-wetherbeei_contig57664.1.1 vs. uniprot
Match: A0A6N7A2Y7_9PROT (Family 5 extracellular solute-binding protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A6N7A2Y7_9PROT)

HSP 1 Score: 191 bits (484), Expect = 2.080e-56
Identity = 87/99 (87.88%), Postives = 94/99 (94.95%), Query Frame = 1 
Query:    1 LSAGDLMNIYFNSQNIPTPNRMNWKDAETDEWLKLGRSALTEADRAKYYALVQQKVMQEHLWMPVLNINMDEVVNKKIKGARPHMIYQNTFYKGLDTSL 297
            LSAGDLMNIYFNS+NIPTPNRMNWKDAETDEWL+LGRSALTEADRAKYYA+VQQKV +EHLW+PVLNINM +V NKKIKGARPHMIYQNTFYKGLD + 
Sbjct:  422 LSAGDLMNIYFNSKNIPTPNRMNWKDAETDEWLRLGRSALTEADRAKYYAMVQQKVTREHLWIPVLNINMHQVTNKKIKGARPHMIYQNTFYKGLDVTF 520
[Close]
BLAST of mRNA_P-wetherbeei_contig57664.1.1 vs. uniprot
Match: A0A1B1ULR0_9BRAD (SBP_bac_5 domain-containing protein n=18 Tax=Bradyrhizobium TaxID=374 RepID=A0A1B1ULR0_9BRAD)

HSP 1 Score: 185 bits (470), Expect = 2.500e-54
Identity = 86/98 (87.76%), Postives = 91/98 (92.86%), Query Frame = 1 
Query:    1 LSAGDLMNIYFNSQNIPTPNRMNWKDAETDEWLKLGRSALTEADRAKYYALVQQKVMQEHLWMPVLNINMDEVVNKKIKGARPHMIYQNTFYKGLDTS 294
            LSAGDLMNIYF+S+NIPTPNRMNWKDAETDEWLK GRSALTEADRAKYYA VQQK M+EHLWMPVLNINM++V NKKI  ARPHMIYQNTFYKGLD S
Sbjct:  422 LSAGDLMNIYFDSRNIPTPNRMNWKDAETDEWLKQGRSALTEADRAKYYAKVQQKAMREHLWMPVLNINMNQVANKKISDARPHMIYQNTFYKGLDVS 519
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BLAST of mRNA_P-wetherbeei_contig57664.1.1 vs. uniprot
Match: UPI0019036523 (hypothetical protein n=1 Tax=Campylobacter sp. 2018MI34 TaxID=2800582 RepID=UPI0019036523)

HSP 1 Score: 167 bits (422), Expect = 5.040e-52
Identity = 76/93 (81.72%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:   19 MNIYFNSQNIPTPNRMNWKDAETDEWLKLGRSALTEADRAKYYALVQQKVMQEHLWMPVLNINMDEVVNKKIKGARPHMIYQNTFYKGLDTSL 297
            MNIYF+S NIPTPNRMNWKDAETD+WLK GR+ALT  DR K+YALVQQKVM EHLWMPVLNINM EV +KK+KG RPHMIYQNTFYKGLD S 
Sbjct:    1 MNIYFDSANIPTPNRMNWKDAETDDWLKHGRAALTPEDRTKFYALVQQKVMNEHLWMPVLNINMHEVSSKKLKGMRPHMIYQNTFYKGLDASF 93
[Close]
BLAST of mRNA_P-wetherbeei_contig57664.1.1 vs. uniprot
Match: A0A5C5THD9_9HYPH (ABC transporter substrate-binding protein n=2 Tax=Reyranella sp. CPCC 100927 TaxID=2599616 RepID=A0A5C5THD9_9HYPH)

HSP 1 Score: 178 bits (452), Expect = 1.510e-51
Identity = 80/99 (80.81%), Postives = 90/99 (90.91%), Query Frame = 1 
Query:    1 LSAGDLMNIYFNSQNIPTPNRMNWKDAETDEWLKLGRSALTEADRAKYYALVQQKVMQEHLWMPVLNINMDEVVNKKIKGARPHMIYQNTFYKGLDTSL 297
            LSAGDLMNIYF+S+N+PTPNRMNWKDAETDEWL+LGR+AL+EA+RA+YYALVQQKV +EHLWMP+LNINM  V NK IK  RPHMIYQNTFYKGLD S 
Sbjct:  442 LSAGDLMNIYFDSRNVPTPNRMNWKDAETDEWLRLGRAALSEAERARYYALVQQKVAEEHLWMPILNINMHMVTNKNIKSGRPHMIYQNTFYKGLDFSF 540
[Close]
BLAST of mRNA_P-wetherbeei_contig57664.1.1 vs. uniprot
Match: A0A5C8PN50_9HYPH (ABC transporter substrate-binding protein n=1 Tax=Vineibacter terrae TaxID=2586908 RepID=A0A5C8PN50_9HYPH)

HSP 1 Score: 172 bits (435), Expect = 3.510e-49
Identity = 78/99 (78.79%), Postives = 88/99 (88.89%), Query Frame = 1 
Query:    1 LSAGDLMNIYFNSQNIPTPNRMNWKDAETDEWLKLGRSALTEADRAKYYALVQQKVMQEHLWMPVLNINMDEVVNKKIKGARPHMIYQNTFYKGLDTSL 297
            LSAGDL+NIYF+S+NIPTPNRMNWKDAETDEWL+LGRSAL  ADR +YY LVQQKV +EHLWMPVLNI+M  V ++K+KG RPHMIYQNTFYKGLD S 
Sbjct:  425 LSAGDLVNIYFDSRNIPTPNRMNWKDAETDEWLRLGRSALDAADRTRYYGLVQQKVTEEHLWMPVLNIHMHMVSSRKLKGGRPHMIYQNTFYKGLDFSF 523
[Close]
BLAST of mRNA_P-wetherbeei_contig57664.1.1 vs. uniprot
Match: A0A5C8PNR2_9HYPH (ABC transporter substrate-binding protein n=1 Tax=Vineibacter terrae TaxID=2586908 RepID=A0A5C8PNR2_9HYPH)

HSP 1 Score: 169 bits (428), Expect = 3.700e-48
Identity = 74/99 (74.75%), Postives = 88/99 (88.89%), Query Frame = 1 
Query:    1 LSAGDLMNIYFNSQNIPTPNRMNWKDAETDEWLKLGRSALTEADRAKYYALVQQKVMQEHLWMPVLNINMDEVVNKKIKGARPHMIYQNTFYKGLDTSL 297
            LSAG+LMN+YF+S+N+PTPNRMNW+D +TDEWLKLGR AL EADRAKYYALVQ++V  E LW+PV+N NM +V NKK+KG RPHM+YQNTFYKGLD SL
Sbjct:  425 LSAGELMNLYFDSKNVPTPNRMNWQDPQTDEWLKLGRGALNEADRAKYYALVQKRVTDEFLWLPVVNANMYQVTNKKLKGVRPHMLYQNTFYKGLDLSL 523
[Close]
BLAST of mRNA_P-wetherbeei_contig57664.1.1 vs. uniprot
Match: A0A1Q3KPE8_9PROT (SBP_bac_5 domain-containing protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1Q3KPE8_9PROT)

HSP 1 Score: 165 bits (417), Expect = 1.520e-46
Identity = 77/99 (77.78%), Postives = 89/99 (89.90%), Query Frame = 1 
Query:    1 LSAGDLMNIYFNSQNIPTPNRMNWKDAETDEWLKLGRSALTEADRAKYYALVQQKVMQEHLWMPVLNINMDEVVNKKIKGARPHMIYQNTFYKGLDTSL 297
            LSAGDLMNIYF+S+NIPTPNRMNWK+AETDE L+ GRSAL +ADRAK Y LVQQ+V +EHLW+PVLNI+M  V +K++KGARPHMIYQNTFYKGLD SL
Sbjct:  426 LSAGDLMNIYFDSRNIPTPNRMNWKNAETDEVLRRGRSALNDADRAKAYELVQQQVTREHLWIPVLNISMHMVTSKRLKGARPHMIYQNTFYKGLDLSL 524
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57664.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001BAA874F6.390e-5991.92ABC transporter substrate-binding protein n=9 Tax=... [more]
A0A521LRF2_9HYPH4.930e-5888.89ABC transporter substrate-binding protein n=1 Tax=... [more]
UPI001BABC1D59.740e-5889.90ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A6N7A2Y7_9PROT2.080e-5687.88Family 5 extracellular solute-binding protein n=2 ... [more]
A0A1B1ULR0_9BRAD2.500e-5487.76SBP_bac_5 domain-containing protein n=18 Tax=Brady... [more]
UPI00190365235.040e-5281.72hypothetical protein n=1 Tax=Campylobacter sp. 201... [more]
A0A5C5THD9_9HYPH1.510e-5180.81ABC transporter substrate-binding protein n=2 Tax=... [more]
A0A5C8PN50_9HYPH3.510e-4978.79ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A5C8PNR2_9HYPH3.700e-4874.75ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A1Q3KPE8_9PROT1.520e-4677.78SBP_bac_5 domain-containing protein n=2 Tax=Alphap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57664contigP-wetherbeei_contig57664:209..508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1038859.AXAU01000003_gene6058
PFAMsSBP_bac_5
Model size300
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02035
KEGG TC3.A.1.5
KEGG Pathwayko02024,map02024
KEGG ModuleM00239
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.6e-50
EggNOG OGsCOG0747@1|root,COG0747@2|Bacteria,1P1HT@1224|Proteobacteria,2U1GD@28211|Alphaproteobacteria,3K62P@41294|Bradyrhizobiaceae
DescriptionBacterial extracellular solute-binding proteins, family 5 Middle
Cds size282
COG categoryE
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186854.9793587-CDS-P-wetherbeei_contig57664:208..4901683186854.9793587-CDS-P-wetherbeei_contig57664:208..490Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57664 209..490 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186854.9950883-UTR-P-wetherbeei_contig57664:490..5081683186854.9950883-UTR-P-wetherbeei_contig57664:490..508Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig57664 491..508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57664.1.1prot_P-wetherbeei_contig57664.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57664 209..490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57664.1.1

>prot_P-wetherbeei_contig57664.1.1 ID=prot_P-wetherbeei_contig57664.1.1|Name=mRNA_P-wetherbeei_contig57664.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp
MNIYFNSQNIPTPNRMNWKDAETDEWLKLGRSALTEADRAKYYALVQQKV
MQEHLWMPVLNINMDEVVNKKIKGARPHMIYQNTFYKGLDTSL*
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mRNA from alignment at P-wetherbeei_contig57664:209..508-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57664.1.1 ID=mRNA_P-wetherbeei_contig57664.1.1|Name=mRNA_P-wetherbeei_contig57664.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig57664:209..508- (Phaeothamnion wetherbeei SAG_119_79)
CTCTCGGCCGGTGACCTGATGAACATCTACTTCAACTCGCAGAACATCCC
GACGCCCAACCGCATGAACTGGAAGGACGCCGAGACCGACGAATGGCTGA
AGCTCGGCCGCTCGGCGCTGACCGAAGCCGACCGCGCCAAGTACTACGCG
CTGGTGCAGCAGAAGGTGATGCAGGAGCACCTGTGGATGCCGGTGCTCAA
CATCAACATGGACGAGGTGGTCAACAAGAAGATCAAGGGCGCCCGGCCGC
ACATGATCTACCAGAACACTTTCTACAAAGGATTGGACACGTCCCTCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57664:209..508-

>mRNA_P-wetherbeei_contig57664.1.1 ID=mRNA_P-wetherbeei_contig57664.1.1|Name=mRNA_P-wetherbeei_contig57664.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig57664:209..508- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACATCTACTTCAACTCGCAGAACATCCCGACGCCCAACCGCATGAA
CTGGAAGGACGCCGAGACCGACGAATGGCTGAAGCTCGGCCGCTCGGCGC
TGACCGAAGCCGACCGCGCCAAGTACTACGCGCTGGTGCAGCAGAAGGTG
ATGCAGGAGCACCTGTGGATGCCGGTGCTCAACATCAACATGGACGAGGT
GGTCAACAAGAAGATCAAGGGCGCCCGGCCGCACATGATCTACCAGAACA
CTTTCTACAAAGGATTGGACACGTCCCTCTAG
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