mRNA_P-wetherbeei_contig57654.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig57654.1.1 vs. uniprot
Match: UPI001907D6E3 (sugar phosphate isomerase/epimerase n=1 Tax=Rhodospirillum rubrum TaxID=1085 RepID=UPI001907D6E3) HSP 1 Score: 87.4 bits (215), Expect = 1.240e-17 Identity = 53/168 (31.55%), Postives = 80/168 (47.62%), Query Frame = 1
Query: 1 DLGSPLVVTEAGSRHPLDDWAPCLENGSPAAMQLLIDTLGELTEHARKCGATLVLEPSVGTVVDTPSQIALISEALPSRSFGFVADWPNLIDGSNIDSAPDVLSAMTAPLAGRVLLAHFKDANRVSGQ-RREVHHHASNADLY---GGVEYPAPGLGSLDLAKYAQWL 492
DLG+P V++E G+ + DW N + Q +D + L + A GA ++E V VV + ++ + LP G + D N D +NID L + L R+ +AH KD + + Q + AS A + GGV+ PAPGLGSL+ Y + L
Sbjct: 98 DLGTPYVISETGTFNSESDWVHHPRNKTAEGYQEALDEIAGLAQEAYDHGAVFLVENYVNNVVGSVDEVLRLFADLPHPGLGLLMDPTNYFDDANIDHVDATLDRIFDALGERIRIAHAKDCKKAANQAEKHAALDASEAHTFRGAGGVDLPAPGLGSLNYEHYLRRL 265
BLAST of mRNA_P-wetherbeei_contig57654.1.1 vs. uniprot
Match: A0A7V9H8E9_9ACTN (Sugar phosphate isomerase/epimerase n=1 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A7V9H8E9_9ACTN) HSP 1 Score: 67.8 bits (164), Expect = 3.220e-10 Identity = 49/163 (30.06%), Postives = 69/163 (42.33%), Query Frame = 1
Query: 4 LGSPLVVTEAGSRHPLDDWAPCLENGSPAAMQLLIDTLGELTEHARKCGATLVLEPSVGTVVDTPSQIALISEALPSRSFGFVADWPNLIDGSNIDSAPDVLSAMTAPLAGRVLLAHFKDANRVSGQRREVHHHASNADLYGGVEYPAPGLGSLDLAKYAQWL 492
LG+ +V TE G+RHP DW EN S AA L +++ L A + G L +E V V+ TP Q+ + E PS V D N + + + V+ + R +LAH KD A D GG+ P G G Y ++L
Sbjct: 289 LGTGVVATETGTRHPDSDWTDVRENWSEAAWGDLDESIEALLPVAERTGTVLAIEAHVENVLKTPGQLIGLLERFPSPYLQVVCDPYNYLSRHLVPAQERVVGDILDRFEHRFVLAHLKDV-------------AIEPD--GGITTPEFGTGVFAQRPYLEFL 436
BLAST of mRNA_P-wetherbeei_contig57654.1.1 vs. uniprot
Match: A0A2D5LAQ8_9GAMM (Xylose isomerase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2D5LAQ8_9GAMM) HSP 1 Score: 62.0 bits (149), Expect = 2.080e-8 Identity = 36/124 (29.03%), Postives = 56/124 (45.16%), Query Frame = 1
Query: 1 DLGSPLVVTEAGSRHPLDDWAPCLENGSPAAMQLLIDTLGELTEHARKCGATLVLEPSVGTVVDTPSQIALISEALPSRSFGFVADWPNLIDGSNIDSAPDVLSAMTAPLAGRVLLAHFKDANR 372
D+G+ ++ T GSRHP + W +N S +L DTL +L HA L EP + V + ++ + + + S + V D NL + +VL L V +AH KD +R
Sbjct: 98 DVGTSVLATCTGSRHPENMWRTHPDNDSAETWAVLRDTLEQLLPHAEAHNVMLAFEPEICQVASSAAKSKRLIDEMGSPNLKVVLDAANLFGEGELPRMSEVLDEAFQLLGDHVAIAHAKDLDR 221
BLAST of mRNA_P-wetherbeei_contig57654.1.1 vs. uniprot
Match: UPI0013EB40EB (sugar phosphate isomerase/epimerase n=1 Tax=Aquisphaera sp. JC669 TaxID=2712864 RepID=UPI0013EB40EB) HSP 1 Score: 61.6 bits (148), Expect = 2.930e-8 Identity = 48/159 (30.19%), Postives = 77/159 (48.43%), Query Frame = 1
Query: 1 DLGSPLVVTEAGSRHPLDDWAPCLENGSPAAMQLLIDTLGELTEHARKCGATLVLEPSVGTVVDTPSQIALISEALPSRSFGFVADWPNLIDGSNIDSAPDVLSAMTAPLAGRVLLAHFKDANRVSGQRREVHHHASNADLYGGVEYPAPGLGSLDLAK 477
+LG+P V TE G PL++ AA+ L ++ L L EHA K G L++EP G +++T Q +++ + + S G N G + D+ +A+ A LAG++ HF+D ++ R VHHH PG G++D A+
Sbjct: 110 ELGAPHVTTEPGG--PLEEG-----RSRQAAIDLFVEILKPLAEHAEKSGVLLLIEPEPGLLLETSDQYEEVADRVDAPSLGL-----NFDVGHAYCVSEDIPAAI-ARLAGQIRHYHFED---IAATR--VHHHL------------VPGTGAIDFAE 238
BLAST of mRNA_P-wetherbeei_contig57654.1.1 vs. uniprot
Match: A0A6L7VKE6_9GAMM (Sugar phosphate isomerase/epimerase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L7VKE6_9GAMM) HSP 1 Score: 58.5 bits (140), Expect = 3.600e-7 Identity = 40/163 (24.54%), Postives = 61/163 (37.42%), Query Frame = 1
Query: 4 LGSPLVVTEAGSRHPLDDWAPCLENGSPAAMQLLIDTLGELTEHARKCGATLVLEPSVGTVVDTPSQIALISEALPSRSFGFVADWPNLIDGSNIDSAPDVLSAMTAPLAGRVLLAHFKDANRVSGQRREVHHHASNADLYGGVEYPAPGLGSLDLAKYAQWL 492
+G+ ++ T GSRHP W +N S +L TL E+ A G L EP + V + + + + S + V D N+ ++ D+L L + +AH KD D G + G G LD A+Y L
Sbjct: 99 VGTSVIATCTGSRHPESMWRHHPDNASEETWHVLRATLEEVLPVAEAAGVALAFEPEINNVASDAKKSRRLIDEMQSPNLKVVMDAANIFGEHDLPRMSDILDEAFELLGDHIAMAHGKDL-----------------DHGGDAGHLPAGTGKLDYARYVSLL 244
BLAST of mRNA_P-wetherbeei_contig57654.1.1 vs. uniprot
Match: A0A6B0YB27_9GAMM (Sugar phosphate isomerase/epimerase n=3 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6B0YB27_9GAMM) HSP 1 Score: 58.5 bits (140), Expect = 3.620e-7 Identity = 41/163 (25.15%), Postives = 64/163 (39.26%), Query Frame = 1
Query: 4 LGSPLVVTEAGSRHPLDDWAPCLENGSPAAMQLLIDTLGELTEHARKCGATLVLEPSVGTVVDTPSQIALISEALPSRSFGFVADWPNLIDGSNIDSAPDVLSAMTAPLAGRVLLAHFKDANRVSGQRREVHHHASNADLYGGVEYPAPGLGSLDLAKYAQWL 492
+G+ +V T GSRHP W +N SP A + + L ++ A G + EP + V + + + + S + V D N+ ++ +VL L V +AH KD D G + A G G LD A+Y + L
Sbjct: 99 VGTSVVATCTGSRHPESMWRHHPDNASPEAWRDVCAVLEQVLPTAEAAGVMVAFEPEINNVASDAKKSRRLIDEMGSPNLKVVMDAANIFGKDDLPRMTEVLDEAFDLLGDHVAIAHGKDL-----------------DHGGDAGHLAAGTGKLDYARYVRLL 244
BLAST of mRNA_P-wetherbeei_contig57654.1.1 vs. uniprot
Match: A0A5B9WCM3_9BACT (D-tagatose 3-epimerase n=1 Tax=Aquisphaera giovannonii TaxID=406548 RepID=A0A5B9WCM3_9BACT) HSP 1 Score: 56.6 bits (135), Expect = 1.760e-6 Identity = 45/159 (28.30%), Postives = 73/159 (45.91%), Query Frame = 1
Query: 1 DLGSPLVVTEAGSRHPLDDWAPCLENGSPAAMQLLIDTLGELTEHARKCGATLVLEPSVGTVVDTPSQIALISEALPSRSFGFVADWPNLIDGSNIDSAPDVLSAMTAPLAGRVLLAHFKDANRVSGQRREVHHHASNADLYGGVEYPAPGLGSLDLAK 477
+LG+P V TE G PL+ AA+ L ++ L L EHA +CG L++EP G +++T Q +++ + + S G N G D+ A+ A +A ++ H +D ++ R VHHH PG G++D A+
Sbjct: 110 ELGAPHVTTEPGG--PLEPG-----QSRQAAVDLFVEVLKPLAEHAERCGVLLLIEPEPGLLLETTDQYEEVADKVDAPSLGL-----NFDVGHAFCVGEDIPRAI-ARMARQIRHYHLED---IAATR--VHHHL------------VPGTGAIDFAE 238 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57654.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig57654.1.1 >prot_P-wetherbeei_contig57654.1.1 ID=prot_P-wetherbeei_contig57654.1.1|Name=mRNA_P-wetherbeei_contig57654.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp DLGSPLVVTEAGSRHPLDDWAPCLENGSPAAMQLLIDTLGELTEHARKCGback to top mRNA from alignment at P-wetherbeei_contig57654:19..510- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig57654.1.1 ID=mRNA_P-wetherbeei_contig57654.1.1|Name=mRNA_P-wetherbeei_contig57654.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig57654:19..510- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig57654:19..510- >mRNA_P-wetherbeei_contig57654.1.1 ID=mRNA_P-wetherbeei_contig57654.1.1|Name=mRNA_P-wetherbeei_contig57654.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig57654:19..510- (Phaeothamnion wetherbeei SAG_119_79)back to top |