mRNA_P-wetherbeei_contig57642.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57642.1.1
Unique NamemRNA_P-wetherbeei_contig57642.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57642.1.1 vs. uniprot
Match: A0A6L6AKH9_9ACTN (FAD-dependent oxidoreductase n=5 Tax=root TaxID=1 RepID=A0A6L6AKH9_9ACTN)

HSP 1 Score: 171 bits (432), Expect = 3.350e-49
Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:    1 VTSLWLDRATAVADDALPAPDETLHTVVVGAGLTGLTTALLLARAGLRVACVEAREVGAVTTGRTTGKVSLLQGTHLSRIRRHRSQAVATAYVE 282
            +TSLWLDRATAVADDALP PDETLHTVVVGAGLTGLTTALLLARAGLRVACVEAREVGAVTTGRTTGKVSLLQGTHLSRIRRHRSQAVA AYV+
Sbjct:    1 MTSLWLDRATAVADDALPGPDETLHTVVVGAGLTGLTTALLLARAGLRVACVEAREVGAVTTGRTTGKVSLLQGTHLSRIRRHRSQAVAAAYVD 94
[Close]
BLAST of mRNA_P-wetherbeei_contig57642.1.1 vs. uniprot
Match: UPI001642E8D2 (FAD-dependent oxidoreductase n=1 Tax=Nocardioides sp. zg-1228 TaxID=2763008 RepID=UPI001642E8D2)

HSP 1 Score: 151 bits (381), Expect = 1.130e-41
Identity = 81/94 (86.17%), Postives = 84/94 (89.36%), Query Frame = 1 
Query:    1 VTSLWLDRATAVADDALPAPDETLHTVVVGAGLTGLTTALLLARAGLRVACVEAREVGAVTTGRTTGKVSLLQGTHLSRIRRHRSQAVATAYVE 282
            +TSLWLDRAT VADD LP P  TL  +VVGAGLTGLTTALLLARAGLRVACVEAREVGAVTTGRTTGKVSLLQGTHLSRIRRHRS  VA AYV+
Sbjct:    1 MTSLWLDRATPVADDPLPPPGATLDALVVGAGLTGLTTALLLARAGLRVACVEAREVGAVTTGRTTGKVSLLQGTHLSRIRRHRSDEVAAAYVD 94
[Close]
BLAST of mRNA_P-wetherbeei_contig57642.1.1 vs. uniprot
Match: UPI001555B78F (FAD-dependent oxidoreductase n=2 Tax=Actinomycetia TaxID=1760 RepID=UPI001555B78F)

HSP 1 Score: 145 bits (366), Expect = 1.730e-39
Identity = 77/94 (81.91%), Postives = 83/94 (88.30%), Query Frame = 1 
Query:    1 VTSLWLDRATAVADDALPAPDETLHTVVVGAGLTGLTTALLLARAGLRVACVEAREVGAVTTGRTTGKVSLLQGTHLSRIRRHRSQAVATAYVE 282
            +TSLWLDRA  VADD LP P E L  +VVGAGLTGLTT+LLLARAGLRVACVEAR+VGAVTTGRTTGKVSLLQGTHLSRIRRH+S  VA AYV+
Sbjct:    1 MTSLWLDRAAPVADDPLPEPGEALDALVVGAGLTGLTTSLLLARAGLRVACVEARQVGAVTTGRTTGKVSLLQGTHLSRIRRHQSDDVAAAYVD 94
[Close]
BLAST of mRNA_P-wetherbeei_contig57642.1.1 vs. uniprot
Match: A0A7Y9H408_9ACTN (Glycine/D-amino acid oxidase-like deaminating enzyme n=1 Tax=Nocardioides cavernae TaxID=1921566 RepID=A0A7Y9H408_9ACTN)

HSP 1 Score: 140 bits (352), Expect = 1.640e-37
Identity = 74/94 (78.72%), Postives = 81/94 (86.17%), Query Frame = 1 
Query:    1 VTSLWLDRATAVADDALPAPDETLHTVVVGAGLTGLTTALLLARAGLRVACVEAREVGAVTTGRTTGKVSLLQGTHLSRIRRHRSQAVATAYVE 282
            +TSLW+DRA  V D+ LP  DE L  +VVGAGLTGLTTALLLARAG RVACVEAR VGAVTTGRTTGKVSLLQGTHLSRIRRH+S+ VA AYV+
Sbjct:    1 MTSLWIDRAVPVVDEPLPGEDEHLDALVVGAGLTGLTTALLLARAGQRVACVEARRVGAVTTGRTTGKVSLLQGTHLSRIRRHQSEEVAAAYVD 94
[Close]
BLAST of mRNA_P-wetherbeei_contig57642.1.1 vs. uniprot
Match: A0A0Q9QAH2_9ACTN (Rieske domain-containing protein n=1 Tax=Nocardioides sp. Soil774 TaxID=1736408 RepID=A0A0Q9QAH2_9ACTN)

HSP 1 Score: 139 bits (349), Expect = 4.510e-37
Identity = 76/94 (80.85%), Postives = 82/94 (87.23%), Query Frame = 1 
Query:    1 VTSLWLDRATAVADDALPAPDETLHTVVVGAGLTGLTTALLLARAGLRVACVEAREVGAVTTGRTTGKVSLLQGTHLSRIRRHRSQAVATAYVE 282
            +TSLWLDRA  V DD LP  +E L  VV GAGLTGLTTALLLARAGLRVACVEAR VGAVTTG TTGKVSLLQGTHLSRIRRHRSQ++A+AYV+
Sbjct:    1 MTSLWLDRAAPVDDDPLPT-EEQLDVVVAGAGLTGLTTALLLARAGLRVACVEARHVGAVTTGHTTGKVSLLQGTHLSRIRRHRSQSLASAYVD 93
[Close]
BLAST of mRNA_P-wetherbeei_contig57642.1.1 vs. uniprot
Match: UPI0017D163AC (FAD-binding oxidoreductase n=1 Tax=Terrabacter sp. TaxID=54015 RepID=UPI0017D163AC)

HSP 1 Score: 138 bits (348), Expect = 1.080e-36
Identity = 74/94 (78.72%), Postives = 80/94 (85.11%), Query Frame = 1 
Query:    1 VTSLWLDRATAVADDALPAPDETLHTVVVGAGLTGLTTALLLARAGLRVACVEAREVGAVTTGRTTGKVSLLQGTHLSRIRRHRSQAVATAYVE 282
            VTSLWLDRA  VADD LP     L  +VVGAGLTGLTTALLLAR+G+RV CVEAR+VGAVTTGRTTGKVSLLQGTHLSRIRRH+S  VA AYV+
Sbjct:   81 VTSLWLDRAAPVADDPLPDSGVALDAIVVGAGLTGLTTALLLARSGMRVECVEARQVGAVTTGRTTGKVSLLQGTHLSRIRRHQSDDVAAAYVD 174
[Close]
BLAST of mRNA_P-wetherbeei_contig57642.1.1 vs. uniprot
Match: UPI001F425111 (FAD-dependent oxidoreductase n=1 Tax=Nocardioides sp. KLBMP 9356 TaxID=2911371 RepID=UPI001F425111)

HSP 1 Score: 137 bits (346), Expect = 1.130e-36
Identity = 74/94 (78.72%), Postives = 81/94 (86.17%), Query Frame = 1 
Query:    1 VTSLWLDRATAVADDALPAPDETLHTVVVGAGLTGLTTALLLARAGLRVACVEAREVGAVTTGRTTGKVSLLQGTHLSRIRRHRSQAVATAYVE 282
            +TSLWLDRA  + DD LP  ++ L  VVVGAGLTGLTT+LLLARAGLRVACVEAREVGAVTTGRTTGKVSLLQGTHLSRIRRHR   +A AYV+
Sbjct:    1 MTSLWLDRAQPLTDDPLPTTED-LDVVVVGAGLTGLTTSLLLARAGLRVACVEAREVGAVTTGRTTGKVSLLQGTHLSRIRRHRGDEIAAAYVD 93
[Close]
BLAST of mRNA_P-wetherbeei_contig57642.1.1 vs. uniprot
Match: A0A4Q2SFP3_9ACTN (FAD-dependent oxidoreductase n=2 Tax=Nocardioides ganghwensis TaxID=252230 RepID=A0A4Q2SFP3_9ACTN)

HSP 1 Score: 137 bits (344), Expect = 2.450e-36
Identity = 73/94 (77.66%), Postives = 79/94 (84.04%), Query Frame = 1 
Query:    1 VTSLWLDRATAVADDALPAPDETLHTVVVGAGLTGLTTALLLARAGLRVACVEAREVGAVTTGRTTGKVSLLQGTHLSRIRRHRSQAVATAYVE 282
            +TSLWLDRA AV DD LPAP   L  VVVGAGLTGLTT LLLARAGLRVAC+EAR VGAVTTG TTGKVSLLQGTHLSRIRRH S++ A  +V+
Sbjct:    1 MTSLWLDRAEAVPDDELPAPGAPLDVVVVGAGLTGLTTTLLLARAGLRVACLEARHVGAVTTGHTTGKVSLLQGTHLSRIRRHGSESTARTFVD 94
[Close]
BLAST of mRNA_P-wetherbeei_contig57642.1.1 vs. uniprot
Match: A0A4Z1BYP1_9ACTN (FAD-dependent oxidoreductase n=1 Tax=Nocardioides eburneiflavus TaxID=2518372 RepID=A0A4Z1BYP1_9ACTN)

HSP 1 Score: 132 bits (331), Expect = 1.860e-34
Identity = 72/94 (76.60%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:    1 VTSLWLDRATAVADDALPAPDETLHTVVVGAGLTGLTTALLLARAGLRVACVEAREVGAVTTGRTTGKVSLLQGTHLSRIRRHRSQAVATAYVE 282
            +TSLWLD A  V DD LPAP   L  VVVGAGLTGLTT LLLARAGLRVACVEAR VGAVTTG TTGKVSLLQGTHLSRI RH S++ A A+V+
Sbjct:    1 MTSLWLDGADTVPDDDLPAPGAPLDVVVVGAGLTGLTTTLLLARAGLRVACVEARHVGAVTTGHTTGKVSLLQGTHLSRICRHGSESTARAFVD 94
[Close]
BLAST of mRNA_P-wetherbeei_contig57642.1.1 vs. uniprot
Match: UPI001749F5E3 (FAD-dependent oxidoreductase n=1 Tax=Nocardioides flavus Wang et al. 2016 TaxID=2058780 RepID=UPI001749F5E3)

HSP 1 Score: 129 bits (325), Expect = 1.450e-33
Identity = 72/93 (77.42%), Postives = 76/93 (81.72%), Query Frame = 1 
Query:    4 TSLWLDRATAVADDALPAPDETLHTVVVGAGLTGLTTALLLARAGLRVACVEAREVGAVTTGRTTGKVSLLQGTHLSRIRRHRSQAVATAYVE 282
            TSLWLDR+  VADD LP  D  L  VVVGAGLTGLTT LLLARAGLRVACVEAR VGAVTTG TTGKVSLLQGTHLSRIRRH S + A  +V+
Sbjct:   10 TSLWLDRSAPVADDELP--DAALDVVVVGAGLTGLTTTLLLARAGLRVACVEARYVGAVTTGHTTGKVSLLQGTHLSRIRRHTSASTARTFVD 100
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57642.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L6AKH9_9ACTN3.350e-4995.74FAD-dependent oxidoreductase n=5 Tax=root TaxID=1 ... [more]
UPI001642E8D21.130e-4186.17FAD-dependent oxidoreductase n=1 Tax=Nocardioides ... [more]
UPI001555B78F1.730e-3981.91FAD-dependent oxidoreductase n=2 Tax=Actinomycetia... [more]
A0A7Y9H408_9ACTN1.640e-3778.72Glycine/D-amino acid oxidase-like deaminating enzy... [more]
A0A0Q9QAH2_9ACTN4.510e-3780.85Rieske domain-containing protein n=1 Tax=Nocardioi... [more]
UPI0017D163AC1.080e-3678.72FAD-binding oxidoreductase n=1 Tax=Terrabacter sp.... [more]
UPI001F4251111.130e-3678.72FAD-dependent oxidoreductase n=1 Tax=Nocardioides ... [more]
A0A4Q2SFP3_9ACTN2.450e-3677.66FAD-dependent oxidoreductase n=2 Tax=Nocardioides ... [more]
A0A4Z1BYP1_9ACTN1.860e-3476.60FAD-dependent oxidoreductase n=1 Tax=Nocardioides ... [more]
UPI001749F5E31.450e-3377.42FAD-dependent oxidoreductase n=1 Tax=Nocardioides ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57642contigP-wetherbeei_contig57642:229..510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog397278.JOJN01000012_gene2179
PFAMsDAO,Rieske
Model size282
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.44e-28
EggNOG OGsCOG0665@1|root,COG0723@1|root,COG0665@2|Bacteria,COG0723@2|Bacteria,2GJB4@201174|Actinobacteria,4DP6X@85009|Propionibacteriales
DescriptionFAD dependent oxidoreductase
Cds size282
COG categoryCE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186854.7948306-CDS-P-wetherbeei_contig57642:228..5101683186854.7948306-CDS-P-wetherbeei_contig57642:228..510Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57642 229..510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57642.1.1prot_P-wetherbeei_contig57642.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57642 229..510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57642.1.1

>prot_P-wetherbeei_contig57642.1.1 ID=prot_P-wetherbeei_contig57642.1.1|Name=mRNA_P-wetherbeei_contig57642.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp
VTSLWLDRATAVADDALPAPDETLHTVVVGAGLTGLTTALLLARAGLRVA
CVEAREVGAVTTGRTTGKVSLLQGTHLSRIRRHRSQAVATAYVE
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mRNA from alignment at P-wetherbeei_contig57642:229..510+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57642.1.1 ID=mRNA_P-wetherbeei_contig57642.1.1|Name=mRNA_P-wetherbeei_contig57642.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig57642:229..510+ (Phaeothamnion wetherbeei SAG_119_79)
GTGACCTCGCTCTGGCTGGACCGCGCCACGGCGGTCGCGGACGACGCGCT
GCCGGCGCCGGACGAGACGCTCCACACGGTCGTCGTGGGCGCCGGGCTGA
CCGGGCTGACGACCGCGCTGCTGCTCGCCCGCGCGGGCCTGCGCGTCGCG
TGCGTGGAGGCCCGCGAGGTCGGCGCCGTCACCACCGGGCGCACGACGGG
CAAGGTCTCGCTGCTCCAGGGCACCCACCTGTCGCGCATCAGGCGCCACC
GCTCGCAAGCGGTCGCCACGGCCTACGTCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57642:229..510+

>mRNA_P-wetherbeei_contig57642.1.1 ID=mRNA_P-wetherbeei_contig57642.1.1|Name=mRNA_P-wetherbeei_contig57642.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig57642:229..510+ (Phaeothamnion wetherbeei SAG_119_79)
GTGACCTCGCTCTGGCTGGACCGCGCCACGGCGGTCGCGGACGACGCGCT
GCCGGCGCCGGACGAGACGCTCCACACGGTCGTCGTGGGCGCCGGGCTGA
CCGGGCTGACGACCGCGCTGCTGCTCGCCCGCGCGGGCCTGCGCGTCGCG
TGCGTGGAGGCCCGCGAGGTCGGCGCCGTCACCACCGGGCGCACGACGGG
CAAGGTCTCGCTGCTCCAGGGCACCCACCTGTCGCGCATCAGGCGCCACC
GCTCGCAAGCGGTCGCCACGGCCTACGTCGAG
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