mRNA_P-wetherbeei_contig57632.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57632.1.1
Unique NamemRNA_P-wetherbeei_contig57632.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57632.1.1 vs. uniprot
Match: A0A5N7YF77_9HYPH (ABC transporter substrate-binding protein n=4 Tax=Xanthobacteraceae TaxID=335928 RepID=A0A5N7YF77_9HYPH)

HSP 1 Score: 166 bits (419), Expect = 9.890e-48
Identity = 79/129 (61.24%), Postives = 100/129 (77.52%), Query Frame = 1
Query:   34 ALLLGVAALSPAKAEPLNIRIAWSIMPTHLIPALYIKKDILKHYGKSYVVDPIQFRGSSPQLTALAAREIDIATLGPAPFALGILNAKLDLKIVADVFQDGVPGSSTMQFLVKSDAGIASAADLKGKRL 420
            AL+L    L+PAKA+P+ IRI WS MP HLIP LY K DILK+YGKSY V+PI+FRGSSPQ+TA+AA EID+A  GP   AL   NA+LD+K+VAD+ QDGV  S +  F+V++D+GI S AD+KGKR+
Sbjct:   16 ALILAPGGLTPAKADPVKIRIGWSTMPGHLIPVLYSKPDILKYYGKSYTVEPIRFRGSSPQITAMAANEIDMAAFGPLVLALAATNARLDVKVVADIIQDGVGDSHSETFMVRADSGINSIADMKGKRV 144          
BLAST of mRNA_P-wetherbeei_contig57632.1.1 vs. uniprot
Match: UPI001BD11620 (ABC transporter substrate-binding protein n=1 Tax=Ancylobacter dichloromethanicus TaxID=518825 RepID=UPI001BD11620)

HSP 1 Score: 163 bits (413), Expect = 8.000e-47
Identity = 79/129 (61.24%), Postives = 98/129 (75.97%), Query Frame = 1
Query:   34 ALLLGVAALSPAKAEPLNIRIAWSIMPTHLIPALYIKKDILKHYGKSYVVDPIQFRGSSPQLTALAAREIDIATLGPAPFALGILNAKLDLKIVADVFQDGVPGSSTMQFLVKSDAGIASAADLKGKRL 420
            A LL VA+   A A+P+NIRI WS MP HLIP LY K DILKHYGKSY V+PI+FRGSSPQ+TA+AA EID+A  GP   AL + NA+LD+K+VAD+ QDGV G  +  FLV++D+GI    D+KGKR+
Sbjct:   16 AALLTVASPHTASADPVNIRIGWSTMPGHLIPVLYSKPDILKHYGKSYTVEPIRFRGSSPQITAMAANEIDMAAFGPLVLALAVNNARLDVKVVADIIQDGVDGYHSETFLVRADSGIDKIEDMKGKRI 144          
BLAST of mRNA_P-wetherbeei_contig57632.1.1 vs. uniprot
Match: D7A149_STAND (NMT1/THI5 like domain protein n=4 Tax=Xanthobacteraceae TaxID=335928 RepID=D7A149_STAND)

HSP 1 Score: 159 bits (401), Expect = 4.860e-45
Identity = 76/129 (58.91%), Postives = 96/129 (74.42%), Query Frame = 1
Query:   34 ALLLGVAALSPAKAEPLNIRIAWSIMPTHLIPALYIKKDILKHYGKSYVVDPIQFRGSSPQLTALAAREIDIATLGPAPFALGILNAKLDLKIVADVFQDGVPGSSTMQFLVKSDAGIASAADLKGKRL 420
            AL+    A+  A A+P+ IRI WS MP HLIP LY K DILKHYGKSY V+PI+FRGSSPQ+TA+AA EID+A  GP   AL + NA+LD+K+VAD+ QDGV    +  FLV+SD+GI+   D+KGKR+
Sbjct:   16 ALIAVPGAMPAAHADPVKIRIGWSTMPGHLIPVLYSKPDILKHYGKSYTVEPIRFRGSSPQITAMAAGEIDMAAFGPLVLALAVTNARLDVKVVADIIQDGVDDYHSETFLVRSDSGISKVTDMKGKRV 144          
BLAST of mRNA_P-wetherbeei_contig57632.1.1 vs. uniprot
Match: A0A258E315_9HYPH (NMT1 domain-containing protein n=1 Tax=Rhizobiales bacterium 32-66-8 TaxID=1970550 RepID=A0A258E315_9HYPH)

HSP 1 Score: 156 bits (394), Expect = 5.520e-44
Identity = 76/137 (55.47%), Postives = 97/137 (70.80%), Query Frame = 1
Query:   10 RNKMIGCWALLLGVAALSPAKAEPLNIRIAWSIMPTHLIPALYIKKDILKHYGKSYVVDPIQFRGSSPQLTALAAREIDIATLGPAPFALGILNAKLDLKIVADVFQDGVPGSSTMQFLVKSDAGIASAADLKGKRL 420
            R + I     ++G+ A   A AEP+ IRI WS MP HLIP LY K DILKHYGKSYVV+P+ FRGSSPQ+ A+AA +ID+A   PA  AL + NA+LD++ VAD+ QDGV G  +  FLVK+D+G+    DLKGKR+
Sbjct:    5 RRRWIRLGLAVVGMLAAGAAAAEPVKIRIGWSTMPGHLIPVLYSKPDILKHYGKSYVVEPVLFRGSSPQIIAMAANKIDMAAFSPAVLALAVNNARLDVRAVADIIQDGVDGYHSDTFLVKTDSGLNKPEDLKGKRI 141          
BLAST of mRNA_P-wetherbeei_contig57632.1.1 vs. uniprot
Match: A0A5B0DVK5_9HYPH (ABC transporter substrate-binding protein n=1 Tax=Aureimonas fodinaquatilis TaxID=2565783 RepID=A0A5B0DVK5_9HYPH)

HSP 1 Score: 154 bits (389), Expect = 2.740e-43
Identity = 70/135 (51.85%), Postives = 98/135 (72.59%), Query Frame = 1
Query:   16 KMIGCWALLLGVAALSPAKAEPLNIRIAWSIMPTHLIPALYIKKDILKHYGKSYVVDPIQFRGSSPQLTALAAREIDIATLGPAPFALGILNAKLDLKIVADVFQDGVPGSSTMQFLVKSDAGIASAADLKGKRL 420
            K++   AL+  +    PA AEP+NIRI WS MP H+IP LY+K +IL+HYG SY V+P++FRGSSPQ+TA+AA EID+   G    AL + NA+ D+K+VAD+ QDG+ G  +  F+V++D+GI +  DLKGKR+
Sbjct:    5 KLLTATALVASIGWAVPAAAEPVNIRIGWSTMPGHMIPVLYLKPEILQHYGTSYTVEPVRFRGSSPQITAMAAGEIDMGAFGALVLALAVNNARQDVKVVADIIQDGIDGKHSETFMVRADSGIETVEDLKGKRV 139          
BLAST of mRNA_P-wetherbeei_contig57632.1.1 vs. uniprot
Match: A0A858X6P5_9HYPH (ABC transporter substrate-binding protein n=1 Tax=Starkeya sp. ORNL1 TaxID=2709380 RepID=A0A858X6P5_9HYPH)

HSP 1 Score: 151 bits (381), Expect = 4.690e-42
Identity = 72/129 (55.81%), Postives = 93/129 (72.09%), Query Frame = 1
Query:   34 ALLLGVAALSPAKAEPLNIRIAWSIMPTHLIPALYIKKDILKHYGKSYVVDPIQFRGSSPQLTALAAREIDIATLGPAPFALGILNAKLDLKIVADVFQDGVPGSSTMQFLVKSDAGIASAADLKGKRL 420
            AL    AA   AKA+P+ IRI WS MP H+IP LY K +ILKHYGKSY V+PI+FRGSSPQ+ A+AA EID+A  G    AL + NA++D K+VAD+ QDGV  S +  F+V++D+GI    D+KGKR+
Sbjct:   16 ALTFTTAAPDVAKADPVKIRIGWSTMPGHMIPVLYSKPEILKHYGKSYTVEPIRFRGSSPQIAAMAAGEIDMAAFGALTLALAVNNARIDAKVVADIIQDGVGDSHSETFMVRADSGITKLEDMKGKRI 144          
BLAST of mRNA_P-wetherbeei_contig57632.1.1 vs. uniprot
Match: UPI00131C0CEF (ABC transporter substrate-binding protein n=1 Tax=Jiella sp. R10 TaxID=2606717 RepID=UPI00131C0CEF)

HSP 1 Score: 150 bits (378), Expect = 1.200e-41
Identity = 69/124 (55.65%), Postives = 91/124 (73.39%), Query Frame = 1
Query:   49 VAALSPAKAEPLNIRIAWSIMPTHLIPALYIKKDILKHYGKSYVVDPIQFRGSSPQLTALAAREIDIATLGPAPFALGILNAKLDLKIVADVFQDGVPGSSTMQFLVKSDAGIASAADLKGKRL 420
            +A   PA A+P+NIRI WS MP HLIP LY K +ILKHYG SY V+P++F+GSSPQ+ A+AA EID+A  G     L + NA+ D+K+VAD+ QDGV G  +  FLV++D+GI S  D+KGKR+
Sbjct:   16 LALAGPAAADPVNIRIGWSTMPGHLIPVLYSKPEILKHYGTSYTVEPVRFKGSSPQIAAMAAGEIDMAAFGALTLTLAVTNARQDVKVVADIIQDGVEGYHSETFLVRADSGIESVEDMKGKRV 139          
BLAST of mRNA_P-wetherbeei_contig57632.1.1 vs. uniprot
Match: UPI000B4A881D (ABC transporter substrate-binding protein n=1 Tax=Rhodomicrobium TaxID=1068 RepID=UPI000B4A881D)

HSP 1 Score: 149 bits (375), Expect = 3.760e-41
Identity = 72/129 (55.81%), Postives = 92/129 (71.32%), Query Frame = 1
Query:   34 ALLLGVAALSPAKAEPLNIRIAWSIMPTHLIPALYIKKDILKHYGKSYVVDPIQFRGSSPQLTALAAREIDIATLGPAPFALGILNAKLDLKIVADVFQDGVPGSSTMQFLVKSDAGIASAADLKGKRL 420
            AL L       A+A+P+ IRI WS MP H+IP LY K +ILKHYGKSY V+PI+FRGSSPQ+TA+AA EID+A   P   AL + NA+LD+K VAD+ QDGV    +  FLV++D+GI    D+KGKR+
Sbjct:   16 ALSLSSFTAPRAQADPVKIRIGWSTMPGHMIPVLYSKPEILKHYGKSYTVEPIRFRGSSPQITAMAANEIDMAAFSPLVLALAVNNARLDVKAVADIIQDGVGEYHSETFLVRADSGITKVEDMKGKRI 144          
BLAST of mRNA_P-wetherbeei_contig57632.1.1 vs. uniprot
Match: A0A512BKG4_9HYPH (Nitrate ABC transporter substrate-binding protein n=1 Tax=Microvirga aerophila TaxID=670291 RepID=A0A512BKG4_9HYPH)

HSP 1 Score: 147 bits (370), Expect = 1.820e-40
Identity = 71/123 (57.72%), Postives = 89/123 (72.36%), Query Frame = 1
Query:   52 AALSPAKAEPLNIRIAWSIMPTHLIPALYIKKDILKHYGKSYVVDPIQFRGSSPQLTALAAREIDIATLGPAPFALGILNAKLDLKIVADVFQDGVPGSSTMQFLVKSDAGIASAADLKGKRL 420
            A  S A AEP+NIRI WS MP H+IP LY K DILKHYGKSY V+PI FRGSSPQ+TA+AA EID+A        L + NA+ ++K+VAD+ QDGV    +  FLV+ D+GI + AD+KGKR+
Sbjct:   17 AFTSGAAAEPVNIRIGWSTMPGHMIPVLYSKPDILKHYGKSYTVEPILFRGSSPQITAMAAGEIDMAAFSALTIVLAVTNARQNVKVVADIIQDGVEDYHSETFLVRKDSGIKTIADMKGKRV 139          
BLAST of mRNA_P-wetherbeei_contig57632.1.1 vs. uniprot
Match: A0A4U6BHM4_9HYPH (ABC transporter substrate-binding protein n=1 Tax=Aquamicrobium sp. LC103 TaxID=1120658 RepID=A0A4U6BHM4_9HYPH)

HSP 1 Score: 146 bits (368), Expect = 3.700e-40
Identity = 73/128 (57.03%), Postives = 92/128 (71.88%), Query Frame = 1
Query:   34 ALLLGVAALSPAKAEPLNIRIAWSIMPTHLIPALYIKKDILKHYGKSYVVDPIQFRGSSPQLTALAAREIDIATLGPAPFALGILNAKLDLKIVADVFQDGVPGSSTMQFLVKSDAGIASAADLKGKR 417
            AL L + A   A AEP+NIRI WS MP HLIP LY K +ILKHYG SY V+PI+FRGSSPQ++A+AA EIDI   GP   AL + NA+ D+K+VADV QDGV    +  ++V++D+GI S  DL+ KR
Sbjct:   11 ALSLTITAPVMANAEPVNIRIGWSTMPGHLIPVLYSKPEILKHYGTSYTVEPIRFRGSSPQISAMAAGEIDIGAFGPLVLALVVNNARQDVKVVADVIQDGVEDYHSETYIVRADSGIDSVDDLRDKR 138          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57632.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5N7YF77_9HYPH9.890e-4861.24ABC transporter substrate-binding protein n=4 Tax=... [more]
UPI001BD116208.000e-4761.24ABC transporter substrate-binding protein n=1 Tax=... [more]
D7A149_STAND4.860e-4558.91NMT1/THI5 like domain protein n=4 Tax=Xanthobacter... [more]
A0A258E315_9HYPH5.520e-4455.47NMT1 domain-containing protein n=1 Tax=Rhizobiales... [more]
A0A5B0DVK5_9HYPH2.740e-4351.85ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A858X6P5_9HYPH4.690e-4255.81ABC transporter substrate-binding protein n=1 Tax=... [more]
UPI00131C0CEF1.200e-4155.65ABC transporter substrate-binding protein n=1 Tax=... [more]
UPI000B4A881D3.760e-4155.81ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A512BKG4_9HYPH1.820e-4057.72Nitrate ABC transporter substrate-binding protein ... [more]
A0A4U6BHM4_9HYPH3.700e-4057.03ABC transporter substrate-binding protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57632contigP-wetherbeei_contig57632:89..508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog639283.Snov_0223
Preferred nameMA20_38205
PFAMsNMT1,NMT1_2
Model size420
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02051,ko:K15553
KEGG TC3.A.1.16,3.A.1.17,3.A.1.17.2
KEGG Pathwayko00920,ko02010,map00920,map02010
KEGG ModuleM00188,M00436
Hectar predicted targeting categorysignal peptide
Exons1
Evalue7.97e-46
EggNOG OGsCOG0715@1|root,COG0715@2|Bacteria,1NUSF@1224|Proteobacteria,2TTKK@28211|Alphaproteobacteria
DescriptionABC transporter, phosphonate, periplasmic substrate-binding protein
Cds size420
COG categoryP
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186854.6855645-CDS-P-wetherbeei_contig57632:88..5081683186854.6855645-CDS-P-wetherbeei_contig57632:88..508Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57632 89..508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57632.1.1prot_P-wetherbeei_contig57632.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57632 89..508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57632.1.1

>prot_P-wetherbeei_contig57632.1.1 ID=prot_P-wetherbeei_contig57632.1.1|Name=mRNA_P-wetherbeei_contig57632.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=140bp
MSWRNKMIGCWALLLGVAALSPAKAEPLNIRIAWSIMPTHLIPALYIKKD
ILKHYGKSYVVDPIQFRGSSPQLTALAAREIDIATLGPAPFALGILNAKL
DLKIVADVFQDGVPGSSTMQFLVKSDAGIASAADLKGKRL
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mRNA from alignment at P-wetherbeei_contig57632:89..508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57632.1.1 ID=mRNA_P-wetherbeei_contig57632.1.1|Name=mRNA_P-wetherbeei_contig57632.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig57632:89..508+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCTGGCGCAACAAAATGATCGGATGCTGGGCGCTGCTGCTGGGCGT CGCGGCACTGTCTCCGGCAAAGGCCGAGCCACTCAACATCCGCATCGCCT GGTCGATCATGCCGACGCACCTCATTCCGGCGCTCTACATCAAGAAAGAT ATCCTGAAGCACTACGGAAAGTCCTATGTGGTCGATCCGATCCAGTTTCG CGGCAGCTCGCCACAATTGACCGCTCTGGCTGCGCGCGAGATCGACATCG CGACGCTCGGCCCCGCGCCTTTCGCGCTCGGCATCCTGAATGCTAAACTC GACCTGAAGATCGTTGCCGACGTGTTTCAGGATGGCGTTCCCGGGTCTTC GACCATGCAGTTCCTGGTCAAGAGCGATGCCGGCATCGCCTCGGCAGCCG ATCTCAAGGGCAAGCGCCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57632:89..508+

>mRNA_P-wetherbeei_contig57632.1.1 ID=mRNA_P-wetherbeei_contig57632.1.1|Name=mRNA_P-wetherbeei_contig57632.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig57632:89..508+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCTGGCGCAACAAAATGATCGGATGCTGGGCGCTGCTGCTGGGCGT
CGCGGCACTGTCTCCGGCAAAGGCCGAGCCACTCAACATCCGCATCGCCT
GGTCGATCATGCCGACGCACCTCATTCCGGCGCTCTACATCAAGAAAGAT
ATCCTGAAGCACTACGGAAAGTCCTATGTGGTCGATCCGATCCAGTTTCG
CGGCAGCTCGCCACAATTGACCGCTCTGGCTGCGCGCGAGATCGACATCG
CGACGCTCGGCCCCGCGCCTTTCGCGCTCGGCATCCTGAATGCTAAACTC
GACCTGAAGATCGTTGCCGACGTGTTTCAGGATGGCGTTCCCGGGTCTTC
GACCATGCAGTTCCTGGTCAAGAGCGATGCCGGCATCGCCTCGGCAGCCG
ATCTCAAGGGCAAGCGCCTG
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