mRNA_P-wetherbeei_contig57607.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57607.1.1
Unique NamemRNA_P-wetherbeei_contig57607.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57607.1.1 vs. uniprot
Match: A0A3S0FT40_9BRAD (Hydrophobe/amphiphile efflux-1 family RND transporter (Fragment) n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A3S0FT40_9BRAD)

HSP 1 Score: 246 bits (628), Expect = 4.730e-82
Identity = 130/137 (94.89%), Postives = 134/137 (97.81%), Query Frame = 1
Query:    1 PTLVLNGLKIDNNLYCQIGLILLIALSAKNAILIVEVGLELHGRDGKPVLESAIEAARARFRPILMTSFAFILGVVPLVLATGAGASARKSIGITVFSGMLASTCLAVLFVPAFFVVVQRFENWRAAKKAPKAQAVA 411
            P L+L+GLKIDNNLYCQIGLILLIALSAKNAILIVEVGLELHGRDGKPVLESAIEAARARFRPILMTSFAFILGVVPLVLATGAGASARKSIGITVFSGMLASTCLAVLFVPAFFVVVQRFENWRA+KKAPK + VA
Sbjct:    1 PMLILSGLKIDNNLYCQIGLILLIALSAKNAILIVEVGLELHGRDGKPVLESAIEAARARFRPILMTSFAFILGVVPLVLATGAGASARKSIGITVFSGMLASTCLAVLFVPAFFVVVQRFENWRASKKAPKVETVA 137          
BLAST of mRNA_P-wetherbeei_contig57607.1.1 vs. uniprot
Match: A0A023XND5_BRAJP (Efflux pump membrane transporter n=243 Tax=Proteobacteria TaxID=1224 RepID=A0A023XND5_BRAJP)

HSP 1 Score: 247 bits (630), Expect = 1.010e-73
Identity = 131/140 (93.57%), Postives = 135/140 (96.43%), Query Frame = 1
Query:    1 PTLVLNGLKIDNNLYCQIGLILLIALSAKNAILIVEVGLELHGRDGKPVLESAIEAARARFRPILMTSFAFILGVVPLVLATGAGASARKSIGITVFSGMLASTCLAVLFVPAFFVVVQRFENWRAAKKAPKAQAVAEVK 420
            P LVLN LKIDNNLYCQIGLILLIALSAKNAILIVEVGLELHGRDGKPVLESAIEAARARFRPILMTSFAFILGVVPLV+ATGAGASARKSIGITVFSGMLASTCLAVLFVPAFFVVVQRFENWR++KK PK + VAEVK
Sbjct:  912 PMLVLNALKIDNNLYCQIGLILLIALSAKNAILIVEVGLELHGRDGKPVLESAIEAARARFRPILMTSFAFILGVVPLVIATGAGASARKSIGITVFSGMLASTCLAVLFVPAFFVVVQRFENWRSSKKTPKPKPVAEVK 1051          
BLAST of mRNA_P-wetherbeei_contig57607.1.1 vs. uniprot
Match: A0A7C9VGQ3_9BRAD (Hydrophobe/amphiphile efflux-1 family RND transporter (Fragment) n=1 Tax=Candidatus Afipia apatlaquensis TaxID=2712852 RepID=A0A7C9VGQ3_9BRAD)

HSP 1 Score: 213 bits (543), Expect = 9.120e-69
Identity = 115/135 (85.19%), Postives = 121/135 (89.63%), Query Frame = 1
Query:    1 PTLVLNGLKIDNNLYCQIGLILLIALSAKNAILIVEVGLELHGRDGKPVLESAIEAARARFRPILMTSFAFILGVVPLVLATGAGASARKSIGITVFSGMLASTCLAVLFVPAFFVVVQRFENWRAAKKAPKAQA 405
            P  VL GL+I+NNLY QIGLILLIALSAKNAILIVEV LELH RD KP+LESA+EAARARFRPILMTSFAFILGV PLV ATGAGASARKSIGITVFSGMLASTCLAVLFVP FFVV+QR ENWRA +KA KA A
Sbjct:   21 PMAVLTGLRIENNLYTQIGLILLIALSAKNAILIVEVALELHVRDRKPLLESAVEAARARFRPILMTSFAFILGVAPLVFATGAGASARKSIGITVFSGMLASTCLAVLFVPTFFVVIQRLENWRAERKARKAAA 155          
BLAST of mRNA_P-wetherbeei_contig57607.1.1 vs. uniprot
Match: A0A401TWQ2_CHIPU (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A401TWQ2_CHIPU)

HSP 1 Score: 209 bits (533), Expect = 9.200e-67
Identity = 113/133 (84.96%), Postives = 120/133 (90.23%), Query Frame = 1
Query:    1 PTLVLNGLKIDNNLYCQIGLILLIALSAKNAILIVEVGLELHGRDGKPVLESAIEAARARFRPILMTSFAFILGVVPLVLATGAGASARKSIGITVFSGMLASTCLAVLFVPAFFVVVQRFENWRAAKKAPKA 399
            P LVL  L+I+NNLY QIG ILLIALSAKNAILIVEV LE H RDGKPVLESAI+AARARFRPILMTSFAFILGV+PLV+ATGAGA+ARKSIGITVFSGM+ASTCLAVLFVPAFFVVVQ FENWR AKK   A
Sbjct:   51 PMLVLTALRIENNLYTQIGTILLIALSAKNAILIVEVALEHHIRDGKPVLESAIDAARARFRPILMTSFAFILGVLPLVIATGAGANARKSIGITVFSGMIASTCLAVLFVPAFFVVVQNFENWRKAKKGKAA 183          
BLAST of mRNA_P-wetherbeei_contig57607.1.1 vs. uniprot
Match: H0U0D0_9BRAD (Efflux pump membrane transporter n=1 Tax=Bradyrhizobium sp. STM 3843 TaxID=551947 RepID=H0U0D0_9BRAD)

HSP 1 Score: 227 bits (578), Expect = 1.830e-66
Identity = 126/138 (91.30%), Postives = 128/138 (92.75%), Query Frame = 1
Query:    1 PTLVLNGLKIDNNLYCQIGLILLIALSAKNAILIVEVGLELHGRDGKPVLESAIEAARARFRPILMTSFAFILGVVPLVLATGAGASARKSIGITVFSGMLASTCLAVLFVPAFFVVVQRFENWRAA-KKAPKAQAVA 411
            P  VL+ LKIDNNLY QIGLILLIALSAKNAILIVEVGLELHGRDGKP+LESAIEAARARFRPILMTSFAFILGVVPLVLATGAGASARKSIGITVFSGMLASTCLAVLFVPAFFVVVQRFENW AA KK P A A A
Sbjct:  911 PMAVLSALKIDNNLYVQIGLILLIALSAKNAILIVEVGLELHGRDGKPLLESAIEAARARFRPILMTSFAFILGVVPLVLATGAGASARKSIGITVFSGMLASTCLAVLFVPAFFVVVQRFENWLAARKKKPGAAAAA 1048          
BLAST of mRNA_P-wetherbeei_contig57607.1.1 vs. uniprot
Match: H0SMZ2_BRAS3 (Efflux pump membrane transporter n=5 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=H0SMZ2_BRAS3)

HSP 1 Score: 226 bits (577), Expect = 2.480e-66
Identity = 121/130 (93.08%), Postives = 125/130 (96.15%), Query Frame = 1
Query:    1 PTLVLNGLKIDNNLYCQIGLILLIALSAKNAILIVEVGLELHGRDGKPVLESAIEAARARFRPILMTSFAFILGVVPLVLATGAGASARKSIGITVFSGMLASTCLAVLFVPAFFVVVQRFENWRAAKKA 390
            P  VL  LKIDNNLY QIGLILLIALSAKNAILIVEVGLELHGRDGKP++ESAIEAAR+RFRPILMTSFAFILGVVPLVLATGAGASARKSIGITVFSGMLASTCLAVLFVPAFFVVVQRFENWRAA+KA
Sbjct:  911 PMAVLTALKIDNNLYVQIGLILLIALSAKNAILIVEVGLELHGRDGKPLIESAIEAARSRFRPILMTSFAFILGVVPLVLATGAGASARKSIGITVFSGMLASTCLAVLFVPAFFVVVQRFENWRAARKA 1040          
BLAST of mRNA_P-wetherbeei_contig57607.1.1 vs. uniprot
Match: A0A533ILZ7_9BRAD (Hydrophobe/amphiphile efflux-1 family RND transporter (Fragment) n=1 Tax=Bradyrhizobium icense TaxID=1274631 RepID=A0A533ILZ7_9BRAD)

HSP 1 Score: 208 bits (529), Expect = 5.660e-65
Identity = 109/132 (82.58%), Postives = 119/132 (90.15%), Query Frame = 1
Query:    1 PTLVLNGLKIDNNLYCQIGLILLIALSAKNAILIVEVGLELHGRDGKPVLESAIEAARARFRPILMTSFAFILGVVPLVLATGAGASARKSIGITVFSGMLASTCLAVLFVPAFFVVVQRFENWRAAKKAPK 396
            P  VL  L+I+NNLY QIG+ILLIALSAKNAILIVEV LELH RDGKP+LESA+ AARARFRPILMTSFAFILGV+PLVLATGAGA+ARKSIGITVFSGM+ASTCLAVLFVP FFVV+QRFENWRA +   K
Sbjct:  138 PMAVLTALRIENNLYTQIGIILLIALSAKNAILIVEVALELHVRDGKPLLESAVNAARARFRPILMTSFAFILGVLPLVLATGAGANARKSIGITVFSGMIASTCLAVLFVPTFFVVIQRFENWRAERSGKK 269          
BLAST of mRNA_P-wetherbeei_contig57607.1.1 vs. uniprot
Match: UPI0005539DF0 (efflux RND transporter permease subunit n=1 Tax=Bradyrhizobium sp. STM 3809 TaxID=551936 RepID=UPI0005539DF0)

HSP 1 Score: 200 bits (508), Expect = 4.950e-64
Identity = 107/111 (96.40%), Postives = 111/111 (100.00%), Query Frame = 1
Query:   58 LILLIALSAKNAILIVEVGLELHGRDGKPVLESAIEAARARFRPILMTSFAFILGVVPLVLATGAGASARKSIGITVFSGMLASTCLAVLFVPAFFVVVQRFENWRAAKKA 390
            LILLIALSAKNAILIVEVGLELHGRDGKP++ESAIEAAR+RFRPILMTSFAFILGVVPLVLATGAGASARKSIGITVFSGMLASTCLAVLFVPAFFVVVQRFENWRAA+KA
Sbjct:    1 LILLIALSAKNAILIVEVGLELHGRDGKPLIESAIEAARSRFRPILMTSFAFILGVVPLVLATGAGASARKSIGITVFSGMLASTCLAVLFVPAFFVVVQRFENWRAARKA 111          
BLAST of mRNA_P-wetherbeei_contig57607.1.1 vs. uniprot
Match: M5F997_9HYPH (Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family n=1 Tax=Mesorhizobium metallidurans STM 2683 TaxID=1297569 RepID=M5F997_9HYPH)

HSP 1 Score: 202 bits (515), Expect = 1.150e-63
Identity = 109/132 (82.58%), Postives = 119/132 (90.15%), Query Frame = 1
Query:    1 PTLVLNGLKIDNNLYCQIGLILLIALSAKNAILIVEVGLELHGRDGKPVLESAIEAARARFRPILMTSFAFILGVVPLVLATGAGASARKSIGITVFSGMLASTCLAVLFVPAFFVVVQRFENWRAAKKAPK 396
            P LVLNGL IDNNLY QIGLILLIALSAKNAILIVEV  EL    GKP+++SAIEAARARFRPILMTSFAFILGV PLV+ATGAGASARKSIGITVFSGM+ASTCLAVLFVP+FFV++QRFE WRAA+K  +
Sbjct:   84 PVLVLNGLGIDNNLYVQIGLILLIALSAKNAILIVEVARELRAA-GKPIIDSAIEAARARFRPILMTSFAFILGVAPLVVATGAGASARKSIGITVFSGMIASTCLAVLFVPSFFVILQRFEEWRAARKTKR 214          
BLAST of mRNA_P-wetherbeei_contig57607.1.1 vs. uniprot
Match: UPI00131BD7E6 (multidrug efflux RND transporter permease subunit n=1 Tax=Bradyrhizobium sp. S69 TaxID=1641856 RepID=UPI00131BD7E6)

HSP 1 Score: 216 bits (551), Expect = 9.800e-63
Identity = 114/135 (84.44%), Postives = 124/135 (91.85%), Query Frame = 1
Query:    1 PTLVLNGLKIDNNLYCQIGLILLIALSAKNAILIVEVGLELHGRDGKPVLESAIEAARARFRPILMTSFAFILGVVPLVLATGAGASARKSIGITVFSGMLASTCLAVLFVPAFFVVVQRFENWRAAKKAPKAQA 405
            P LVL+ L+IDNNLY QIG+ILLIALSAKNAILIVEV LELHGR+GKP+LESA+EAARARFRPILMTSFAFILGVVPLVLATGAGA+ARKSIGITVFSGMLASTCLAVLFVP FFVV+QRFENW  A+K    +A
Sbjct:  911 PMLVLSALRIDNNLYTQIGIILLIALSAKNAILIVEVALELHGREGKPLLESAVEAARARFRPILMTSFAFILGVVPLVLATGAGANARKSIGITVFSGMLASTCLAVLFVPTFFVVIQRFENWLTARKQAPVKA 1045          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57607.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3S0FT40_9BRAD4.730e-8294.89Hydrophobe/amphiphile efflux-1 family RND transpor... [more]
A0A023XND5_BRAJP1.010e-7393.57Efflux pump membrane transporter n=243 Tax=Proteob... [more]
A0A7C9VGQ3_9BRAD9.120e-6985.19Hydrophobe/amphiphile efflux-1 family RND transpor... [more]
A0A401TWQ2_CHIPU9.200e-6784.96Uncharacterized protein n=2 Tax=cellular organisms... [more]
H0U0D0_9BRAD1.830e-6691.30Efflux pump membrane transporter n=1 Tax=Bradyrhiz... [more]
H0SMZ2_BRAS32.480e-6693.08Efflux pump membrane transporter n=5 Tax=unclassif... [more]
A0A533ILZ7_9BRAD5.660e-6582.58Hydrophobe/amphiphile efflux-1 family RND transpor... [more]
UPI0005539DF04.950e-6496.40efflux RND transporter permease subunit n=1 Tax=Br... [more]
M5F997_9HYPH1.150e-6382.58Transporter, hydrophobe/amphiphile efflux-1 (HAE1)... [more]
UPI00131BD7E69.800e-6384.44multidrug efflux RND transporter permease subunit ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57607contigP-wetherbeei_contig57607:52..477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog335659.S23_15890
Preferred nameMA20_01135
PFAMsACR_tran
Model size426
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03296
KEGG TC2.A.6.2
Hectar predicted targeting categoryother localisation
Exons1
Evalue1e-79
EggNOG OGsCOG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3JRGX@41294|Bradyrhizobiaceae
DescriptionAcrB/AcrD/AcrF family
Cds size426
COG categoryV
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186854.373251-CDS-P-wetherbeei_contig57607:51..4771683186854.373251-CDS-P-wetherbeei_contig57607:51..477Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57607 52..477 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57607.1.1prot_P-wetherbeei_contig57607.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57607 52..477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57607.1.1

>prot_P-wetherbeei_contig57607.1.1 ID=prot_P-wetherbeei_contig57607.1.1|Name=mRNA_P-wetherbeei_contig57607.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
PTLVLNGLKIDNNLYCQIGLILLIALSAKNAILIVEVGLELHGRDGKPVL
ESAIEAARARFRPILMTSFAFILGVVPLVLATGAGASARKSIGITVFSGM
LASTCLAVLFVPAFFVVVQRFENWRAAKKAPKAQAVAEVKP*
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mRNA from alignment at P-wetherbeei_contig57607:52..477+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57607.1.1 ID=mRNA_P-wetherbeei_contig57607.1.1|Name=mRNA_P-wetherbeei_contig57607.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig57607:52..477+ (Phaeothamnion wetherbeei SAG_119_79)
CCGACGCTGGTCCTCAACGGCCTGAAGATCGACAACAACCTCTATTGCCA GATCGGCCTGATCCTGCTGATCGCGCTGTCGGCCAAGAACGCGATCCTGA TCGTGGAGGTCGGGCTCGAGCTGCACGGCCGCGACGGCAAGCCGGTGCTG GAATCCGCGATCGAGGCGGCGCGCGCCCGCTTCCGACCGATCCTGATGAC CTCGTTCGCCTTCATCCTCGGCGTGGTGCCGCTGGTGCTCGCGACCGGCG CCGGCGCCAGCGCCCGCAAGTCGATCGGCATCACGGTATTCTCGGGCATG CTGGCCTCGACCTGCCTCGCGGTGCTGTTCGTGCCGGCCTTCTTCGTGGT GGTGCAGCGGTTCGAGAACTGGCGGGCCGCGAAGAAGGCGCCGAAGGCGC AGGCCGTGGCGGAGGTGAAGCCGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57607:52..477+

>mRNA_P-wetherbeei_contig57607.1.1 ID=mRNA_P-wetherbeei_contig57607.1.1|Name=mRNA_P-wetherbeei_contig57607.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig57607:52..477+ (Phaeothamnion wetherbeei SAG_119_79)
CCGACGCTGGTCCTCAACGGCCTGAAGATCGACAACAACCTCTATTGCCA
GATCGGCCTGATCCTGCTGATCGCGCTGTCGGCCAAGAACGCGATCCTGA
TCGTGGAGGTCGGGCTCGAGCTGCACGGCCGCGACGGCAAGCCGGTGCTG
GAATCCGCGATCGAGGCGGCGCGCGCCCGCTTCCGACCGATCCTGATGAC
CTCGTTCGCCTTCATCCTCGGCGTGGTGCCGCTGGTGCTCGCGACCGGCG
CCGGCGCCAGCGCCCGCAAGTCGATCGGCATCACGGTATTCTCGGGCATG
CTGGCCTCGACCTGCCTCGCGGTGCTGTTCGTGCCGGCCTTCTTCGTGGT
GGTGCAGCGGTTCGAGAACTGGCGGGCCGCGAAGAAGGCGCCGAAGGCGC
AGGCCGTGGCGGAGGTGAAGCCGTAG
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