mRNA_P-wetherbeei_contig5757.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5757.2.1
Unique NamemRNA_P-wetherbeei_contig5757.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5757.2.1 vs. uniprot
Match: A0A6H5JSG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG1_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 1.270e-52
Identity = 148/487 (30.39%), Postives = 231/487 (47.43%), Query Frame = 1 
Query:   46 GDYIETCGFGSPTSSDRAVTHMGDAVRGTGARINEQLELRLDLVHKRVFFIILLCTCYSGGSFAGADVLRLRLVGKRRHFGEASGQVLEREVARTVVTHEGIL-QPREGCLTVAK----PTALIIGDIRK------------GGKEERDAAAAGCGWVYRTGVLQGRFEAGAD--STLVMLAQTYLQRWVPGLVFQGEELVIRRVYDIVHHLTPAAMDTLQRRFVD-GRGSLDRDGFFRAMLAGLLQ-HPQLRPERQCVQLLCMLSDLWSQISAPDESEGGVGGHASSSSSHGTARRSGGSDGDRGTHIFERVKWEELTAFWVEAGMISTQVRLS------------------------------------------------KCWADEALQYRASPRFALQARRPTAVVTRPSFNRLVVLEERGSSVRIVDGASGALTQTLCPDTYQLGELDGRAP-ESFLTVMCVELMESRGWVAVASSDYSIGL 1296
            G Y+ET G+G P S+D ++ H  D+V+    +I+E ++  L +VHKR++   L+ T Y   +F+    ++LR++       ++    LERE+AR V + EG   + R G    ++    P  +++GDIR+            GG         G   +    VL    +   +  S ++ L Q YL+ W+P +   G+EL+IRRVYDIV  L    ++ ++  +V  G   + ++ F   ML  LL+ H  LR ERQ ++L  +LSDL+ QIS         G  A       T  RSG           + + WE+ T FWVEA  I+T  ++                                                 +CWADE LQ+     F L  R+PT +++ P  + +V LEERGS V I++G +G L  TLCP T Q     G  P ESFLTV+ VE ++++G V ++S+D++I +
Sbjct:   37 GSYVETVGYGCPISTDGSIVHKHDSVQPEAGKISEDVDFDLSMVHKRIYSACLVATTYGKNTFSALRSIQLRILAPSHLLSDS----LEREIARVVFSREGCFGRKRNGSSLPSRQSSMPNVVVLGDIRRLLSQAAAVGGDVGGGPPGVGGEPGAWNLRAPNVLASHVDTPQEEASKVIPLVQCYLRDWIPSIEVIGQELLIRRVYDIVSFLPVGDLEAMKADWVKAGTFGVTKELFLGIMLRVLLRAHVPLRDERQRLELTSLLSDLFDQISRTKRD----GAEAF------TGLRSG----------KDVLTWEQFTTFWVEAATINTHSQVGAAPCLCTDAINVPAIGLIEFFADTRLYGYKHRMAVDGVKGGSLDGRAVRCWADETLQWEMDSNFELAVRKPTKLISLPLMHLVVGLEERGSYVSILNGHTGRLHVTLCPSTLQTVTTGGLNPHESFLTVLDVECIDTKGIVVISSTDHAISV 499
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BLAST of mRNA_P-wetherbeei_contig5757.2.1 vs. uniprot
Match: D7FZM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM9_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.210e-24
Identity = 115/444 (25.90%), Postives = 188/444 (42.34%), Query Frame = 1 
Query:    1 EHIDIDFSMMLFNARGDYIETCGFGSPTSSDRAVTHMGDAVRGTGARINEQLELRLDLVHKRVFFIILLCTCYSGGSFAGADVLRLRLVGKRRHFGEASGQVLEREVARTVVTHEGILQPREGCLTV-----AKPTALIIGDIRKGGKEERDAAAAGCGWVYRTGVLQGRFEAGADSTLVMLAQTYLQRWVPGLVFQGEELV--IRRVYD--IVHHLTPAAMDTLQRRFVDGRGSLDRDGFFRAMLAGLLQHPQLR---PERQCVQLLCMLSDLWSQISAPDESEGGVGGHASSSSSHGTARRSGGSDGDRGTHIFERVKWEELTAFWVEAGMISTQVRLSKCWADEALQYRASPRFALQARRPTAVVTRPSFNRLVVLEERGSSVRIVDGASGALTQTLCPDTYQLGELDGRAPESFLTVMCVELMESRGWVAVASSDYSIGL 1296
            E++D+D S  LF+A+G Y+ET G G P S+D  + H  D+V+    +I E ++  L +VHKR++   L+ T Y   +F+    ++LR++       ++    LERE+AR V + EG    +    ++     + P  +++GDIR+   +    A    G     G   G +   A + L     T  Q  +P +     E +  I  +    ++  L    ++ L+  +V G G+    G  + +  G++    LR   P R   Q L  L+ L S +          G  A       T  RSG           + + WE+ T FWVEA  I+T  +  +CWADE LQ+     F L      A VT    N                                         ESFLTV+ VE ++++G V ++S+D++I +
Sbjct:   60 ENLDVDISAFLFDAKGSYVETVGCGCPASTDGGIVHKHDSVQPEAGKIWEDMDFDLSMVHKRIYSACLVATTYGKNTFSALRSIQLRILAPSHLLSDS----LEREIARVVFSREGCFGTKRNGRSLPSRQSSMPNVIVLGDIRRLLSQAAAVAGDVGGGPPGVGGEPGAWNLRAPNVLASHVDTP-QEVIPLVQCYLREWIPSIEVIGQELLISFLPVEDLEALKADWVKG-GTF---GVTKELFLGIMLRVLLRAHVPLRDERQRL-ELTSLLSDLFDQISRTKRDGAEAF------TGLRSG----------KDVLAWEQFTTFWVEAATINTHSQAVRCWADETLQWEVDSNFEL------ATVTTGGLN---------------------------------------PHESFLTVLDVECIDTKGIVVISSTDHAISV 432
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5757.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSG1_9PHAE1.270e-5230.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZM9_ECTSI1.210e-2425.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5757contigP-wetherbeei_contig5757:1289..3717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1296
Hectar predicted targeting categoryother localisation
Exons7
Cds size1272
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5757.2.1prot_P-wetherbeei_contig5757.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5757 1313..3717 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186853.6079533-UTR-P-wetherbeei_contig5757:1288..13121683186853.6079533-UTR-P-wetherbeei_contig5757:1288..1312Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5757 1289..1312 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186853.618349-CDS-P-wetherbeei_contig5757:1312..14741683186853.618349-CDS-P-wetherbeei_contig5757:1312..1474Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5757 1313..1474 +
1683186853.6285527-CDS-P-wetherbeei_contig5757:1599..17121683186853.6285527-CDS-P-wetherbeei_contig5757:1599..1712Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5757 1600..1712 +
1683186853.6388092-CDS-P-wetherbeei_contig5757:1877..23071683186853.6388092-CDS-P-wetherbeei_contig5757:1877..2307Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5757 1878..2307 +
1683186853.648778-CDS-P-wetherbeei_contig5757:2538..27881683186853.648778-CDS-P-wetherbeei_contig5757:2538..2788Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5757 2539..2788 +
1683186853.6585968-CDS-P-wetherbeei_contig5757:2986..30511683186853.6585968-CDS-P-wetherbeei_contig5757:2986..3051Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5757 2987..3051 +
1683186853.6683571-CDS-P-wetherbeei_contig5757:3214..33521683186853.6683571-CDS-P-wetherbeei_contig5757:3214..3352Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5757 3215..3352 +
1683186853.6823838-CDS-P-wetherbeei_contig5757:3603..37171683186853.6823838-CDS-P-wetherbeei_contig5757:3603..3717Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5757 3604..3717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5757.2.1

>prot_P-wetherbeei_contig5757.2.1 ID=prot_P-wetherbeei_contig5757.2.1|Name=mRNA_P-wetherbeei_contig5757.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=424bp
MMLFNARGDYIETCGFGSPTSSDRAVTHMGDAVRGTGARINEQLELRLDL
VHKRVFFIILLCTCYSGGSFAGADVLRLRLVGKRRHFGEASGQVLEREVA
RTVVTHEGILQPREGCLTVAKPTALIIGDIRKGGKEERDAAAAGCGWVYR
TGVLQGRFEAGADSTLVMLAQTYLQRWVPGLVFQGEELVIRRVYDIVHHL
TPAAMDTLQRRFVDGRGSLDRDGFFRAMLAGLLQHPQLRPERQCVQLLCM
LSDLWSQISAPDESEGGVGGHASSSSSHGTARRSGGSDGDRGTHIFERVK
WEELTAFWVEAGMISTQVRLSKCWADEALQYRASPRFALQARRPTAVVTR
PSFNRLVVLEERGSSVRIVDGASGALTQTLCPDTYQLGELDGRAPESFLT
VMCVELMESRGWVAVASSDYSIGL
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mRNA from alignment at P-wetherbeei_contig5757:1289..3717+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5757.2.1 ID=mRNA_P-wetherbeei_contig5757.2.1|Name=mRNA_P-wetherbeei_contig5757.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2429bp|location=Sequence derived from alignment at P-wetherbeei_contig5757:1289..3717+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCACATCGACATCGATTTTAGCATGATGCTTTTCAATGCCCGCGGAGA
TTACATTGAGACTTGTGGCTTCGGCAGCCCTACGTCATCCGATCGGGCGG
TGACTCATATGGGCGATGCAGTAAGGGGAACCGGAGCACGGATAAACGAG
CAACTTGAGCTTCGACTCGACCTCGTCCATAAGAGGGTGTGTGCTCCTGT
GGAAGGCTTTTAAAGCGCAGTCGTCACTCAGCATAGCCTAAGAAGCGGTT
CGCGAAATGCTTGTTAGAGGCCGACAGCTTCGCCCGTTTCTGTCCCCTGA
GATTCCTGCAGGTTTTTTTCATCATCCTCCTCTGTACATGCTACAGCGGG
GGCAGCTTTGCCGGGGCCGATGTCTTGCGCCTCCGCCTCGTGGGCAAGCG
ACGACACTTCGGAGAGGCAAGCGGGTATATCTCAAGAGAGGGATGAAGTC
AATTTGGCGGTCTAGCTCTCCCGCGTCTTTGAACGAACCATATGCAGCCT
ACTGATTGCGGCTGACTGGTTCAATAGCGGCTTAAACAATCATTCAACTT
TCTTTTCTTTCCAAAAAACGGTCCCGTTGGAACCGGGAGGCAGGTGTTAG
AACGGGAGGTTGCACGGACCGTAGTGACGCACGAGGGCATACTTCAGCCG
AGAGAAGGATGCCTCACCGTGGCCAAGCCGACTGCGCTTATCATCGGCGA
CATTCGGAAGGGCGGAAAAGAGGAGCGGGATGCAGCTGCTGCGGGCTGCG
GATGGGTGTACCGTACCGGCGTGCTCCAAGGGCGTTTTGAAGCGGGGGCT
GACAGCACGCTGGTGATGCTCGCGCAGACATACCTGCAGCGCTGGGTCCC
CGGCTTGGTGTTTCAAGGGGAAGAGCTTGTGATCCGGCGAGTGTACGACA
TCGTGCATCACCTCACCCCGGCGGCGATGGACACTCTCCAGCGGCGATTC
GTCGACGGCCGCGGCAGCCTCGACCGAGACGGCTTCTTCCGGGCCATGCT
CGCCGGACTCCTCCAGCACGTGTGTTGTGAGGCGTCACTTTCGGCTTGCC
TTTTCCCTTTGCTTTGCTTGGTGTCTCTCGCTACCTCAACCCCGACCCGA
CCCTTCCGGTATTACCACGTGCTTTGAAAGGCATCGTTTTCCGCTTGGTC
CCCCCTTTTCTTTGCTAGTGTCTCTCGCTGCCTCAAACGCGACCCGCTAC
GACCGGTTTTGCCCTGCCTGCCGCTCTCTTCTTCGGCTTATTTCATGCAG
CCACAGTTGCGGCCCGAGCGACAATGCGTCCAGCTCCTCTGCATGCTCTC
GGACCTTTGGTCCCAGATCAGCGCCCCGGATGAGAGCGAGGGAGGGGTTG
GAGGCCACGCCAGCAGCAGTAGCAGCCACGGCACCGCACGCCGCAGCGGA
GGCAGCGACGGCGATCGTGGAACTCACATCTTTGAACGCGTGAAATGGGA
AGAGCTAACGGCCTTTTGGGTTGAGGCTGGCATGATCAGCACACAGGTCC
GTGGCTGTCTCTAGCACCTCTTTTTTTACTTGCTGTCCCATCTTTTTTCA
TGCTGTCCCATCTTTTTTTACTTGCGCCTGCAATGATGGAGTTCTATTCT
ATCGCATCGCCCATTTCCTGGCTTTGACTTGTGACTGCATTTGCGCGGCG
ACGGTGACGGCGGCGGCAATGACGGCGGCGGCGGCGGCGGACAGGGAGGA
CTGTCGAAATGTTGGGCCGACGAGGCACTGCAGTACCGGGCATCGCCGCG
CTTTGCCCTGCAGGTGATCTAGCTTGCAGCATGCGCCGCTACTGATTCTC
TTTCACTCTTTGAAGACATTATAGGCGCTTGTGGGTGTATTTCGCATATT
GATTTTAAAACCGTCACTATGCATCCTTTCCCCGCTGCTTGCACCATACC
CCGGTTGCAAACGTTGGCCTGAGCAGGCACGGAGGCCGACGGCGGTTGTA
ACCCGCCCGAGCTTCAACCGGCTGGTGGTGCTCGAGGAGCGCGGCAGCTC
GGTCCGGATCGTGGATGGCGCCAGTGGAGCCCTCACTCAGACTCTCTGCC
CAGACACCTACCAGGTGCGTCAACGGGGGCACTGGACTTCATTTCACATC
CTACCAGAAGATGGAGGGGTAGATAGCTTGCAGCAGCTGATGCCGATTGT
GAGTGCTCCTTCTGCAGATAACACCGTGGTCGGCGCCATTTACGTTAAGA
TCACTGCTGTAACAGCGGCCGCCGCTGCGCCGCCTGCTGCCTACGCCGTT
GTGGCTCTGACCAAACTCAACTACCGCACATGCTGCGCCAGGCAGTAAGC
GGGGGAGTCTATCAGCTCGGTGAGCTGGATGGGCGGGCTCCGGAAAGTTT
TCTGACGGTGATGTGTGTGGAGCTCATGGAGAGCCGCGGCTGGGTCGCCG
TGGCATCGAGCGACTACTCCATCGGGTTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5757:1289..3717+

>mRNA_P-wetherbeei_contig5757.2.1 ID=mRNA_P-wetherbeei_contig5757.2.1|Name=mRNA_P-wetherbeei_contig5757.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1272bp|location=Sequence derived from alignment at P-wetherbeei_contig5757:1289..3717+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGCTTTTCAATGCCCGCGGAGATTACATTGAGACTTGTGGCTTCGG
CAGCCCTACGTCATCCGATCGGGCGGTGACTCATATGGGCGATGCAGTAA
GGGGAACCGGAGCACGGATAAACGAGCAACTTGAGCTTCGACTCGACCTC
GTCCATAAGAGGGTTTTTTTCATCATCCTCCTCTGTACATGCTACAGCGG
GGGCAGCTTTGCCGGGGCCGATGTCTTGCGCCTCCGCCTCGTGGGCAAGC
GACGACACTTCGGAGAGGCAAGCGGGCAGGTGTTAGAACGGGAGGTTGCA
CGGACCGTAGTGACGCACGAGGGCATACTTCAGCCGAGAGAAGGATGCCT
CACCGTGGCCAAGCCGACTGCGCTTATCATCGGCGACATTCGGAAGGGCG
GAAAAGAGGAGCGGGATGCAGCTGCTGCGGGCTGCGGATGGGTGTACCGT
ACCGGCGTGCTCCAAGGGCGTTTTGAAGCGGGGGCTGACAGCACGCTGGT
GATGCTCGCGCAGACATACCTGCAGCGCTGGGTCCCCGGCTTGGTGTTTC
AAGGGGAAGAGCTTGTGATCCGGCGAGTGTACGACATCGTGCATCACCTC
ACCCCGGCGGCGATGGACACTCTCCAGCGGCGATTCGTCGACGGCCGCGG
CAGCCTCGACCGAGACGGCTTCTTCCGGGCCATGCTCGCCGGACTCCTCC
AGCACCCACAGTTGCGGCCCGAGCGACAATGCGTCCAGCTCCTCTGCATG
CTCTCGGACCTTTGGTCCCAGATCAGCGCCCCGGATGAGAGCGAGGGAGG
GGTTGGAGGCCACGCCAGCAGCAGTAGCAGCCACGGCACCGCACGCCGCA
GCGGAGGCAGCGACGGCGATCGTGGAACTCACATCTTTGAACGCGTGAAA
TGGGAAGAGCTAACGGCCTTTTGGGTTGAGGCTGGCATGATCAGCACACA
GGTCCGACTGTCGAAATGTTGGGCCGACGAGGCACTGCAGTACCGGGCAT
CGCCGCGCTTTGCCCTGCAGGCACGGAGGCCGACGGCGGTTGTAACCCGC
CCGAGCTTCAACCGGCTGGTGGTGCTCGAGGAGCGCGGCAGCTCGGTCCG
GATCGTGGATGGCGCCAGTGGAGCCCTCACTCAGACTCTCTGCCCAGACA
CCTACCAGCTCGGTGAGCTGGATGGGCGGGCTCCGGAAAGTTTTCTGACG
GTGATGTGTGTGGAGCTCATGGAGAGCCGCGGCTGGGTCGCCGTGGCATC
GAGCGACTACTCCATCGGGTTG
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