mRNA_P-wetherbeei_contig5755.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5755.1.1
Unique NamemRNA_P-wetherbeei_contig5755.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5755.1.1 vs. uniprot
Match: A0A6H5K0V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V7_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 5.870e-9
Identity = 45/150 (30.00%), Postives = 71/150 (47.33%), Query Frame = 1 
Query:    1 VISLDAKDAFNSRYWAVLLPAVAAVLERAGAYALSAYGRSDGLLPVLFYRLESGEVRVIWSASGCQQGDPLGPVFFAIAILAAMHAFRATVAASGASLVGYLDDLAVLGMPGDSQLSRSRVAPVQQPKVDLEAVGLVLNMQKSTALSAPG 450
            V+  D  DAFN+    V++   A  +     Y    Y   D +     Y ++SGE R I   SG QQGD +GP  F   ++  +   RA     G  L  Y+DD+++      + ++   +  +     +LEAVG+++N  KS+AL  PG
Sbjct:  131 VVQTDCSDAFNTGKRTVIMAQAAKSVPDVLGYIARCY---DEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAMYDHLGVCLKAYMDDISL----HFNNITAENIQLIPDLVDELEAVGIIVNRGKSSALPPPG 273
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BLAST of mRNA_P-wetherbeei_contig5755.1.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.200e-8
Identity = 47/151 (31.13%), Postives = 75/151 (49.67%), Query Frame = 1 
Query:    1 VISLDAKDAFNS-RYWAVLLPAVAAVLERAGAYALSAYGRSDGLLPVLFYRLESGEVRVIWSASGCQQGDPLGPVFFAIAILAAMHAFRATVAASGASLVGYLDDLAVLGMPGDSQLSRSRVAPVQQPKVDLEAVGLVLNMQKSTALSAPG 450
            V+  D  +AFN+ +  A++  A  +V +  G Y    Y   D +     Y ++SGE R I   SG QQGD +GP  F   ++  +   RA     G SL  Y+DD+++        ++   +  +     +LEAVG+++N  KS+AL  PG
Sbjct:  146 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVG-YIARCY---DEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVSKVRAKYDHLGVSLKAYVDDISL----HFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPG 288
[Close]
BLAST of mRNA_P-wetherbeei_contig5755.1.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.560e-8
Identity = 47/151 (31.13%), Postives = 73/151 (48.34%), Query Frame = 1 
Query:    1 VISLDAKDAFNS-RYWAVLLPAVAAVLERAGAYALSAYGRSDGLLPVLFYRLESGEVRVIWSASGCQQGDPLGPVFFAIAILAAMHAFRATVAASGASLVGYLDDLAVLGMPGDSQLSRSRVAPVQQPKVDLEAVGLVLNMQKSTALSAPG 450
            V+  D  +AFN+ +  A++  A  +V +  G Y    Y   D +     Y ++SGE R I   SG QQGD +GP  F   ++  +   RA     G  L  Y+DD+  L       ++   +  +     +LEAVG+++N  KS+AL  PG
Sbjct:  138 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVG-YIARCY---DEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNLGVRLKAYMDDIISLHF---KNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPG 281
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BLAST of mRNA_P-wetherbeei_contig5755.1.1 vs. uniprot
Match: A0A6H5KDD0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD0_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.680e-8
Identity = 44/150 (29.33%), Postives = 69/150 (46.00%), Query Frame = 1 
Query:    1 VISLDAKDAFNSRYWAVLLPAVAAVLERAGAYALSAYGRSDGLLPVLFYRLESGEVRVIWSASGCQQGDPLGPVFFAIAILAAMHAFRATVAASGASLVGYLDDLAVLGMPGDSQLSRSRVAPVQQPKVDLEAVGLVLNMQKSTALSAPG 450
            V+  D  +AFN+     ++   A  +     Y    Y   D +     Y ++SGE R I   SG QQGD +GP  F   +   +   RA     G SL  Y+DD+++        ++   +  +     +LEAVG+++N  KS+AL  PG
Sbjct:   95 VVQTDCSNAFNTGKRTAIMAKAAKSVPNLVGYIARCY---DEISAKSIYAMDSGERRTIECKSGVQQGDGMGPPLFFFILFPIVLKLRAKYDHLGVSLKAYMDDISL----HFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPG 237
[Close]
BLAST of mRNA_P-wetherbeei_contig5755.1.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.970e-8
Identity = 47/151 (31.13%), Postives = 75/151 (49.67%), Query Frame = 1 
Query:    1 VISLDAKDAFNS-RYWAVLLPAVAAVLERAGAYALSAYGRSDGLLPVLFYRLESGEVRVIWSASGCQQGDPLGPVFFAIAILAAMHAFRATVAASGASLVGYLDDLAVLGMPGDSQLSRSRVAPVQQPKVDLEAVGLVLNMQKSTALSAPG 450
            V+  D  +AFN+ +  A++  A  +V +  G Y    Y   D +     Y ++SGE R I   SG QQGD +GP  F   ++  +   RA     G SL  Y+DD+++        ++   +  +     +LEAVG+++N  KS+AL  PG
Sbjct:  533 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVG-YIARCY---DEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISL----HFKNITAEFIQVIPDLVNELEAVGIIVNRGKSSALPPPG 675
[Close]
BLAST of mRNA_P-wetherbeei_contig5755.1.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 3.970e-8
Identity = 46/151 (30.46%), Postives = 74/151 (49.01%), Query Frame = 1 
Query:    1 VISLDAKDAFNS-RYWAVLLPAVAAVLERAGAYALSAYGRSDGLLPVLFYRLESGEVRVIWSASGCQQGDPLGPVFFAIAILAAMHAFRATVAASGASLVGYLDDLAVLGMPGDSQLSRSRVAPVQQPKVDLEAVGLVLNMQKSTALSAPG 450
            V+  D  +AFN+ +  A++  A  +V +  G Y    Y   D +     Y ++SGE R I   SG QQGD +GP  F   ++  +   RA     G  L  Y+DD+++        ++   +  +     +LEAVG+++N  KS+AL  PG
Sbjct:   54 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVG-YIARCY---DEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL----HFKNITAENIQVIPDVVDELEAVGIIVNRGKSSALPPPG 196
[Close]
BLAST of mRNA_P-wetherbeei_contig5755.1.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 5.560e-8
Identity = 46/151 (30.46%), Postives = 74/151 (49.01%), Query Frame = 1 
Query:    1 VISLDAKDAFNS-RYWAVLLPAVAAVLERAGAYALSAYGRSDGLLPVLFYRLESGEVRVIWSASGCQQGDPLGPVFFAIAILAAMHAFRATVAASGASLVGYLDDLAVLGMPGDSQLSRSRVAPVQQPKVDLEAVGLVLNMQKSTALSAPG 450
            V+  D  +AFN+ +  A++  A  +V +  G Y    Y   D +     Y ++SGE R I   SG QQGD +GP  F   ++  +   RA     G  L  Y+DD+++        ++   +  +     +LEAVG+++N  KS+AL  PG
Sbjct:  528 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVG-YIARCY---DEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL----HFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALHPPG 670
[Close]
BLAST of mRNA_P-wetherbeei_contig5755.1.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 5.750e-8
Identity = 46/151 (30.46%), Postives = 74/151 (49.01%), Query Frame = 1 
Query:    1 VISLDAKDAFNS-RYWAVLLPAVAAVLERAGAYALSAYGRSDGLLPVLFYRLESGEVRVIWSASGCQQGDPLGPVFFAIAILAAMHAFRATVAASGASLVGYLDDLAVLGMPGDSQLSRSRVAPVQQPKVDLEAVGLVLNMQKSTALSAPG 450
            V+  D  +AFN+ +  A++  A  +V +  G Y    Y   D +     Y ++SGE R I   SG QQGD +GP  F   ++  +   RA     G  L  Y+DD+++        ++   +  +     +LEAVG+++N  KS+AL  PG
Sbjct:  507 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVG-YIARCY---DEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL----HFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPG 649
[Close]
BLAST of mRNA_P-wetherbeei_contig5755.1.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.540e-7
Identity = 46/151 (30.46%), Postives = 73/151 (48.34%), Query Frame = 1 
Query:    1 VISLDAKDAFNS-RYWAVLLPAVAAVLERAGAYALSAYGRSDGLLPVLFYRLESGEVRVIWSASGCQQGDPLGPVFFAIAILAAMHAFRATVAASGASLVGYLDDLAVLGMPGDSQLSRSRVAPVQQPKVDLEAVGLVLNMQKSTALSAPG 450
            V+  D  +AFN+ +  A++  A  +V +  G Y    Y   D +     Y ++SGE R I   SG QQGD +GP  F   ++  +   RA     G  L  Y+DD+++        ++   +        +LEAVG+++N  KS+AL  PG
Sbjct:  506 VVQTDCSNAFNTGKRTAIMAQASKSVPDLVG-YIARCY---DEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL----HFKDITAENIQVTPDLVDELEAVGIIVNRGKSSALPPPG 648
[Close]
BLAST of mRNA_P-wetherbeei_contig5755.1.1 vs. uniprot
Match: A0A6H5KT19_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT19_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.690e-7
Identity = 45/151 (29.80%), Postives = 72/151 (47.68%), Query Frame = 1 
Query:    1 VISLDAKDAFNS-RYWAVLLPAVAAVLERAGAYALSAYGRSDGLLPVLFYRLESGEVRVIWSASGCQQGDPLGPVFFAIAILAAMHAFRATVAASGASLVGYLDDLAVLGMPGDSQLSRSRVAPVQQPKVDLEAVGLVLNMQKSTALSAPG 450
            V+  D  +  N+ +  A++  A  +V +  G  A     R   L     Y ++SGE R I   SG QQGD +GP  F   ++  +   RA     G SL  Y+DD+++        ++   +  +     +LEAVG+++N  KS+AL  PG
Sbjct:  184 VVQTDCSNGLNTGKRTAIMAQAAKSVPDLVGCIA-----RCYELPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISL----HFKNITAESIQVIPDLVDELEAVGIIVNRGKSSALPPPG 325
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5755.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5K0V7_9PHAE5.870e-930.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLG6_9PHAE1.200e-831.13Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LL14_9PHAE1.560e-831.13Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KDD0_9PHAE2.680e-829.33Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KJC0_9PHAE2.970e-831.13Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KYJ9_9PHAE3.970e-830.46Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JI32_9PHAE5.560e-830.46Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE5.750e-830.46Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKQ2_9PHAE2.540e-730.46Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KT19_9PHAE2.690e-729.80Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5755contigP-wetherbeei_contig5755:180..650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15702057
PFAMsRVT_1,zf-RVT
Model size471
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.21e-06
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota
DescriptionRibonuclease H protein
Cds size471
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186853.3958116-CDS-P-wetherbeei_contig5755:179..6501683186853.3958116-CDS-P-wetherbeei_contig5755:179..650Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5755 180..650 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5755.1.1prot_P-wetherbeei_contig5755.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5755 180..650 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5755.1.1

>prot_P-wetherbeei_contig5755.1.1 ID=prot_P-wetherbeei_contig5755.1.1|Name=mRNA_P-wetherbeei_contig5755.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
VISLDAKDAFNSRYWAVLLPAVAAVLERAGAYALSAYGRSDGLLPVLFYR
LESGEVRVIWSASGCQQGDPLGPVFFAIAILAAMHAFRATVAASGASLVG
YLDDLAVLGMPGDSQLSRSRVAPVQQPKVDLEAVGLVLNMQKSTALSAPG
VGAADLS
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mRNA from alignment at P-wetherbeei_contig5755:180..650-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5755.1.1 ID=mRNA_P-wetherbeei_contig5755.1.1|Name=mRNA_P-wetherbeei_contig5755.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig5755:180..650- (Phaeothamnion wetherbeei SAG_119_79)
GTCATCTCGCTCGACGCAAAAGATGCCTTCAACTCGCGTTACTGGGCCGT
GCTCCTCCCGGCGGTTGCTGCCGTGCTGGAGCGCGCCGGGGCTTACGCCC
TCAGCGCGTACGGCCGGTCGGACGGCCTGCTACCAGTGCTGTTCTACCGC
TTGGAGTCTGGGGAAGTTCGGGTCATTTGGTCCGCCAGCGGCTGCCAGCA
GGGCGACCCGCTCGGCCCGGTCTTCTTCGCTATCGCGATCCTCGCGGCGA
TGCATGCCTTCCGGGCCACTGTCGCGGCCAGCGGAGCCTCTCTAGTCGGC
TATCTCGATGACCTGGCGGTGCTCGGCATGCCGGGCGACTCGCAGCTTTC
GCGTTCCCGTGTCGCCCCGGTCCAGCAGCCGAAGGTGGATCTGGAGGCGG
TTGGACTGGTGTTGAACATGCAGAAGTCGACGGCACTGAGTGCTCCGGGC
GTTGGTGCCGCCGATCTCTCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5755:180..650-

>mRNA_P-wetherbeei_contig5755.1.1 ID=mRNA_P-wetherbeei_contig5755.1.1|Name=mRNA_P-wetherbeei_contig5755.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig5755:180..650- (Phaeothamnion wetherbeei SAG_119_79)
GTCATCTCGCTCGACGCAAAAGATGCCTTCAACTCGCGTTACTGGGCCGT
GCTCCTCCCGGCGGTTGCTGCCGTGCTGGAGCGCGCCGGGGCTTACGCCC
TCAGCGCGTACGGCCGGTCGGACGGCCTGCTACCAGTGCTGTTCTACCGC
TTGGAGTCTGGGGAAGTTCGGGTCATTTGGTCCGCCAGCGGCTGCCAGCA
GGGCGACCCGCTCGGCCCGGTCTTCTTCGCTATCGCGATCCTCGCGGCGA
TGCATGCCTTCCGGGCCACTGTCGCGGCCAGCGGAGCCTCTCTAGTCGGC
TATCTCGATGACCTGGCGGTGCTCGGCATGCCGGGCGACTCGCAGCTTTC
GCGTTCCCGTGTCGCCCCGGTCCAGCAGCCGAAGGTGGATCTGGAGGCGG
TTGGACTGGTGTTGAACATGCAGAAGTCGACGGCACTGAGTGCTCCGGGC
GTTGGTGCCGCCGATCTCTCT
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