mRNA_P-wetherbeei_contig5753.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5753.1.1
Unique NamemRNA_P-wetherbeei_contig5753.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5753.1.1 vs. uniprot
Match: D7FR50_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR50_ECTSI)

HSP 1 Score: 421 bits (1081), Expect = 5.080e-135
Identity = 210/306 (68.63%), Postives = 244/306 (79.74%), Query Frame = 1
Query:    1 MQVAWNTVNIKQLPKEEKRRIINEVRLLHGLDHKNLVQFHGSWVNREKEQVVFVTEILPGGSLMDFIRRVELIRWKVIKRWARQILKGLHYLHNEHNPPIIHRDLKCDNIFINGHSGDIRIGDLGLSTSNVRSDKTMSVLGTPEFMAPELYDESYNEKVDIYAFGMCMLEMITKERPYSECANAAQIYKKVTSQVLPAVLERVHNRRGREFIRICLQFDPDRRPSAAELREHPFLVDQNEEEDNEQVYLDPPEAVXXXXXXXXXXXXXPSMR-----DVALRDAATLPGTSHPAQKGAPTLGTIQE 903
            ++VAWNTVNIK LPK+EK+RI+NEVRLL  L+HKNLVQFHGSWVNRE+E+V+FVTEI+  GSLMDFIR+VE+IRW+V+KRWARQIL+G+HYLH++  PPIIHRDLKCDNIFING +GDIRIGDLGLSTSN RS+KTMSVLGTPEFMAPELY+E Y EKVDIYAFGMCMLEM+TKERPYSEC NAAQIY+KVTSQ+LP+ L+RV N R REFIR+CL  DPD RPSA +L   PFL D+NEEEDN  V L+P  A              P +      +V  +    LPG  HPAQ+G P L TI E
Sbjct:    3 IEVAWNTVNIKNLPKDEKKRIMNEVRLLQNLEHKNLVQFHGSWVNREREEVIFVTEIMQSGSLMDFIRKVEMIRWRVVKRWARQILRGMHYLHSQ-EPPIIHRDLKCDNIFINGAAGDIRIGDLGLSTSNTRSEKTMSVLGTPEFMAPELYEEFYTEKVDIYAFGMCMLEMVTKERPYSECVNAAQIYRKVTSQILPSALDRVQNIRAREFIRVCLSPDPDDRPSAMDLLNLPFLRDKNEEEDNTLVMLEPLAAEGAGGQIPASTAGVPLVAQGMDLNVPAKIDPLLPGVLHPAQRGTPGLDTIDE 307          
BLAST of mRNA_P-wetherbeei_contig5753.1.1 vs. uniprot
Match: A0A835Z3R9_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3R9_9STRA)

HSP 1 Score: 389 bits (998), Expect = 1.650e-130
Identity = 188/252 (74.60%), Postives = 217/252 (86.11%), Query Frame = 1
Query:    1 MQVAWNTVNIKQLPKEEKRRIINEVRLLHGLDHKNLVQFHGSWVNREKEQVVFVTEILPGGSLMDFIRRVELIRWKVIKRWARQILKGLHYLHNEHNPPIIHRDLKCDNIFINGHSGDIRIGDLGLSTSNVRSDKTMSVLGTPEFMAPELYDESYNEKVDIYAFGMCMLEMITKERPYSECANAAQIYKKVTSQVLPAVLERVHNRRGREFIRICLQFDPDRRPSAAELREHPFLVDQNEEEDNEQVYLDPP 756
            ++VAWNTVNI  LP+ EK+RI+NEVRLL  L+HKNLVQFHGSWVNREKEQV+FVTEI+  GSL DFI +VE+IRWKVIKRWARQIL+GL YLH   + P+IHRDLKCDNIFINGH+GDIRIGDLGLSTS+ R+DK MSVLGTPEFMAPELYDESYNEKVDIYAFGMCMLEM+TK+RPYSEC NAAQIYK+VT+ +LPA L RV  R   +F+R CL FDP RRPSAA L +HPFL ++ ++EDN +V L PP
Sbjct:  171 IEVAWNTVNITLLPRGEKKRIMNEVRLLQNLEHKNLVQFHGSWVNREKEQVIFVTEIVVNGSLKDFINKVEVIRWKVIKRWARQILRGLEYLHTR-DVPVIHRDLKCDNIFINGHTGDIRIGDLGLSTSSARTDKNMSVLGTPEFMAPELYDESYNEKVDIYAFGMCMLEMVTKDRPYSECTNAAQIYKRVTAGILPAALLRVQLRTAVDFVRECLDFDPRRRPSAAALLQHPFLAERADDEDNMEVQLGPP 421          
BLAST of mRNA_P-wetherbeei_contig5753.1.1 vs. uniprot
Match: A0A835YJM9_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJM9_9STRA)

HSP 1 Score: 385 bits (988), Expect = 4.160e-129
Identity = 189/252 (75.00%), Postives = 216/252 (85.71%), Query Frame = 1
Query:    1 MQVAWNTVNIKQLPKEEKRRIINEVRLLHGLDHKNLVQFHGSWVNREKEQVVFVTEILPGGSLMDFIRRVELIRWKVIKRWARQILKGLHYLHNEHNPPIIHRDLKCDNIFINGHSGDIRIGDLGLSTSNVRSDKTMSVLGTPEFMAPELYDESYNEKVDIYAFGMCMLEMITKERPYSECANAAQIYKKVTSQVLPAVLERVHNRRGREFIRICLQFDPDRRPSAAELREHPFLVDQNEEEDNEQVYLDPP 756
            ++VAWN VNI  LP+EEK+RI+NEVRLL  L+HKNLVQFHGSWVNREKEQV+FVTEI+  GSL DFI +VE+IRWKVIKRWARQIL+GL YLH   + PIIHRDLKCDNIFINGH+GDIRIGDLGLSTS+ R+DK MSVLGTPEFMAPELYDE+YNEKVDIYAFGMCMLEMITKERPYSEC NAAQIYK+VT+ +LP+ L RV  R   +FIR CL FD   RPSAAEL +H FL ++N++EDN +V L PP
Sbjct:  114 IEVAWNAVNITLLPREEKKRIMNEVRLLQNLEHKNLVQFHGSWVNREKEQVIFVTEIVVNGSLKDFINKVEVIRWKVIKRWARQILRGLEYLHTR-DIPIIHRDLKCDNIFINGHTGDIRIGDLGLSTSSTRTDKNMSVLGTPEFMAPELYDEAYNEKVDIYAFGMCMLEMITKERPYSECTNAAQIYKRVTAGILPSALWRVQLRTAVDFIRECLDFDASLRPSAAELLQHRFLEERNDDEDNMEVKLGPP 364          
BLAST of mRNA_P-wetherbeei_contig5753.1.1 vs. uniprot
Match: A0A7S4A5B1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A5B1_9STRA)

HSP 1 Score: 320 bits (821), Expect = 1.720e-105
Identity = 157/258 (60.85%), Postives = 194/258 (75.19%), Query Frame = 1
Query:    1 MQVAWNTVNIKQLPKEEKRRIINEVRLLHGLDHKNLVQFHGSWVNREKEQVVFVTEILPGGSLMDFIRRVELIRWKVIKRWARQILKGLHYLHNEHNPPIIHRDLKCDNIFINGHSGDIRIGDLGLSTSNVRSD---KTMSVLGTPEFMAPELYDESYNEKVDIYAFGMCMLEMITKERPYSECANAAQIYKKVTSQVLPAVLERVHNRRGREFIRICLQFDPDRRPSAAELREHPFLVDQNEEEDNEQVYLDPPEAV 765
            ++VAWN VN+K +P  EK R+INEVRLL  LDH+N++ FHGSWVNR++ +V F+TEIL  GSL  FI+RV+++RWK+IKRW RQILK L YLH+  +P IIHRD+KCDNIFING SGD+R+GDLGLST+    D   K  SVLGTPEFMAPELYDE+Y+EKVD+YAFGMC LEMITK+ PY+EC NA QIYKKV + V P  L  V + R   F+R+C++ DP  RPSA+EL  HPFLV      + E   L PP  +
Sbjct:   65 IEVAWNVVNLKNMPAHEKARVINEVRLLDRLDHENIIDFHGSWVNRDRGEVCFITEILSSGSLKRFIQRVQVVRWKIIKRWMRQILKALAYLHSR-DPKIIHRDIKCDNIFINGASGDLRVGDLGLSTARAADDAASKGRSVLGTPEFMAPELYDEAYDEKVDVYAFGMCALEMITKQLPYAECRNATQIYKKVQADVPPDALALVPDERAAAFVRLCVRRDPAARPSASELLAHPFLVPDPAFGETEVKLLAPPRTL 321          
BLAST of mRNA_P-wetherbeei_contig5753.1.1 vs. uniprot
Match: A0A8J9TZH4_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TZH4_PHATR)

HSP 1 Score: 314 bits (804), Expect = 7.090e-104
Identity = 154/248 (62.10%), Postives = 198/248 (79.84%), Query Frame = 1
Query:    1 MQVAWNTVNIKQLPKEEKRRIINEVRLLHGLDHKNLVQFHGSWVNREKEQVVFVTEILPGGSLMDFIRRVELIRWKVIKRWARQILKGLHYLHNEHNPPIIHRDLKCDNIFINGHSGDIRIGDLGLSTSNVRSDKTMSVLGTPEFMAPELYDE-SYNEKVDIYAFGMCMLEMITKERPYSECANAAQIYKKVTSQVLPAVLERVHNRRGREFIRICLQFDPDR----RPSAAELREHPFLVDQNEEED 729
            ++VAWN VN+  +PK E+ RI+NEVRLL  L H N++ FHGSWVNRE+++V FVTEIL  G+L  FI +V++IRWK+ KRWA QIL GL YLH++ NPP+IHRDLKCDNIFING SGD+RIGDLGLST + R+ + +SVLGTPEFMAP++Y+E SY+EKVDIYAFGMCMLE++T+E PYSEC N AQIYK+V+S   P VL R+ +R  REF+R+CL    +     RPSA++L +HPFLV +N ++D
Sbjct:   48 IEVAWNVVNLSGVPKSERNRIVNEVRLLERLHHHNIISFHGSWVNRERQEVNFVTEILSSGTLKSFISKVQVIRWKIAKRWALQILNGLDYLHSQ-NPPVIHRDLKCDNIFINGTSGDLRIGDLGLSTVH-RTGRVLSVLGTPEFMAPDMYEEHSYDEKVDIYAFGMCMLEILTQEIPYSECNNPAQIYKRVSSGEPPEVLSRLQSRHAREFVRLCLGRKDEAGKFVRPSASDLIKHPFLVKRNTDDD 293          
BLAST of mRNA_P-wetherbeei_contig5753.1.1 vs. uniprot
Match: F0Y9K5_AURAN (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9K5_AURAN)

HSP 1 Score: 308 bits (790), Expect = 1.670e-102
Identity = 146/236 (61.86%), Postives = 184/236 (77.97%), Query Frame = 1
Query:    1 MQVAWNTVNIKQLPKEEKRRIINEVRLLHGLDHKNLVQFHGSWVNREKEQVVFVTEILPGGSLMDFIRRVELIRWKVIKRWARQILKGLHYLHNEHNPPIIHRDLKCDNIFINGHSGDIRIGDLGLSTSN-VRSDKTMSVLGTPEFMAPELYDESYNEKVDIYAFGMCMLEMITKERPYSECANAAQIYKKVTSQVLPAVLERVHNRRGREFIRICLQFDPDRRPSAAELREHPFL 705
            ++VAWN VN+K +P  EK R+INEVRLL  L+H+N++ FHGSWVNRE+ +V F+TEIL  GSL  FI +V+++RWK+IKRW RQILK L YLH++  PPIIHRD+KC+NIFING +GD+RIGDLGLST+  V   K  SVLGTPEFMAPELYDE Y+EKVD++AFGMC+LEMITK+ PYSEC NA QIY+KV   V P  L  + + +  +F++ C+Q DP  R  AAEL +H FL
Sbjct:    9 IEVAWNVVNLKTMPPNEKARVINEVRLLDRLEHENIIDFHGSWVNRERGEVCFITEILSSGSLKKFINKVQVVRWKIIKRWVRQILKALAYLHSQ-TPPIIHRDIKCENIFINGSTGDLRIGDLGLSTAKKVNEGKGQSVLGTPEFMAPELYDEEYDEKVDVFAFGMCVLEMITKQLPYSECTNATQIYRKVCGNVPPDALRLIPDDKALDFVKGCIQKDPAERLGAAELLKHDFL 243          
BLAST of mRNA_P-wetherbeei_contig5753.1.1 vs. uniprot
Match: W7THI3_9STRA (Non-specific serine/threonine protein kinase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7THI3_9STRA)

HSP 1 Score: 333 bits (855), Expect = 5.330e-102
Identity = 163/233 (69.96%), Postives = 190/233 (81.55%), Query Frame = 1
Query:    7 VAWNTVNIKQLPKEEKRRIINEVRLLHGLDHKNLVQFHGSWVNREKEQVVFVTEILPGGSLMDFIRRVELIRWKVIKRWARQILKGLHYLHNEHNPPIIHRDLKCDNIFINGHSGDIRIGDLGLSTSNVRSDKTMSVLGTPEFMAPELYDESYNEKVDIYAFGMCMLEMITKERPYSECANAAQIYKKVTSQVLPAVLERVHNRRGREFIRICLQFDPDRRPSAAELREHPFL 705
            VAWNT+++  LPK+EK RI++EVRLL  LDH N++ F GSWVNRE+E+VVF+TEIL  GSL DFI++V++IRWK+IKRW RQIL+GL YLH+ H PPIIHRDLKCDNIFING SGD+RIGDLGLST        +SVLGTPEFMAPELYDE Y+EKVD+YAFGMC+LEM+TKE PYSECANAAQIYKKV  QV P VL RV N R R+FIR CL  DP +RPS  +L E  FL
Sbjct:  147 VAWNTISLAGLPKQEKIRIMHEVRLLEQLDHGNIISFFGSWVNREREEVVFITEILSSGSLKDFIKKVQVIRWKIIKRWCRQILRGLLYLHS-HVPPIIHRDLKCDNIFINGSSGDLRIGDLGLSTYITGRTAPLSVLGTPEFMAPELYDEKYDEKVDVYAFGMCVLEMVTKETPYSECANAAQIYKKVIGQVAPKVLFRVCNLRARDFIRSCLASDPSQRPSVQDLLESNFL 378          
BLAST of mRNA_P-wetherbeei_contig5753.1.1 vs. uniprot
Match: B8C7K0_THAPS (Mitogen activated protein kinase-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C7K0_THAPS)

HSP 1 Score: 308 bits (790), Expect = 6.960e-102
Identity = 150/238 (63.03%), Postives = 182/238 (76.47%), Query Frame = 1
Query:    1 MQVAWNTVNIKQLPKEEKRRIINEVRLLHGLDHKNLVQFHGSWVNREKEQVVFVTEILPGGSLMDFIRRVELIRWKVIKRWARQILKGLHYLHNEHNPPIIHRDLKCDNIFINGHSGDIRIGDLGLSTSNVRSDKTMSVLGTPEFMAPELYDESYNEKVDIYAFGMCMLEMITKERPYSECANAAQIYKKVTSQVLPAVLERVHNRRGREFIRICLQF--DPDRRPSAAELREHPFLV 708
            ++VAWN V +  +PK E+ RI+NEVRLL  L H N++ FHGSWVNRE E+V+FVTEIL  G+L  F+++V+LIRWK+ KRWA QILKGL YLH++ +PPIIHRDLKCDNIFING SGD+RIGD GLST+  + ++   VLGTPEFMAPELYDE+YNEKVD+YAFGM +LE+IT + PY EC N AQIYKKVT  + PA L RV +   R FI +CL    D   RPSA EL  H FLV
Sbjct:   40 IEVAWNVVKLGGVPKAERIRIVNEVRLLERLHHPNIISFHGSWVNRETERVIFVTEILSSGTLKSFVQKVQLIRWKIFKRWAIQILKGLEYLHSQ-DPPIIHRDLKCDNIFINGTSGDLRIGDFGLSTAISKKNQVSCVLGTPEFMAPELYDENYNEKVDVYAFGMLLLEIITNQVPYHECTNPAQIYKKVTQGIPPASLRRVKSENARNFILLCLGIGKDASERPSATELLNHQFLV 276          
BLAST of mRNA_P-wetherbeei_contig5753.1.1 vs. uniprot
Match: A0A7S4SMA1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SMA1_9STRA)

HSP 1 Score: 322 bits (826), Expect = 1.330e-100
Identity = 166/292 (56.85%), Postives = 215/292 (73.63%), Query Frame = 1
Query:    1 MQVAWNTVNIKQLPKEEKRRIINEVRLLHGLDHKNLVQFHGSWVNREKEQVVFVTEILPGGSLMDFIRRVELIRWKVIKRWARQILKGLHYLHNEHNPPIIHRDLKCDNIFINGHSGDIRIGDLGLSTSNVRSDKTMSVLGTPEFMAPELYDESYNEKVDIYAFGMCMLEMITKERPYSECANAAQIYKKVTSQVLPAVLERVHNRRGREFIRICLQFDPDRRPSAAELREHPFLVDQNEEEDNEQVYLDPP-EAVXXXXXXXXXXXXXPSMRDVALRDAATLPGTSHPAQK 873
            ++VAWN V +  +PK E+ RI+NEV+LL  L HKN++ FHGSWVNREKEQVVFVTEIL  G+L  F+ +V++IRW++ KRWA QIL GL Y+H+  +PPIIHRDLKCDNIFING SGD+RIGDLGLST  + ++KT+SVLGTPEFMAPELYDE Y+EK+D+YAFGMC+LE+ TKE PY EC+N AQIYKKVT+ ++P  L RV ++  REFI +CL  D D RPS +EL  HPFL ++++  D+ +V +D P +A               S  D + RDA  + G + PA +
Sbjct:  334 IEVAWNVVKLTGVPKTERSRIVNEVQLLQRLSHKNIISFHGSWVNREKEQVVFVTEILSSGTLKSFVDKVQVIRWRIAKRWATQILNGLDYMHSL-DPPIIHRDLKCDNIFINGTSGDLRIGDLGLSTV-ISTNKTLSVLGTPEFMAPELYDEVYDEKIDVYAFGMCLLEIFTKEIPYRECSNPAQIYKKVTNGIMPESLSRVRSQEAREFIMLCLG-DKDCRPSTSELLLHPFLAEKSD--DDAEVEVDSPIQATAINEISDGDLSSGGSSADKS-RDAMGIGGATRPANE 619          
BLAST of mRNA_P-wetherbeei_contig5753.1.1 vs. uniprot
Match: A0A421FJA9_9STRA (Protein kinase domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A421FJA9_9STRA)

HSP 1 Score: 303 bits (776), Expect = 1.040e-98
Identity = 149/246 (60.57%), Postives = 189/246 (76.83%), Query Frame = 1
Query:    1 MQVAWNTVNIKQLPKEEKRRIINEVRLLHGLDHKNLVQFHGSWVNREKEQVVFVTEILPGGSLMDFIRRVELIRWKVIKRWARQILKGLHYLHNEHNPPIIHRDLKCDNIFINGHSGDIRIGDLGLSTSNV--RSDKTMSVLGTPEFMAPELYDESYNEKVDIYAFGMCMLEMITKERPYSECANAAQIYKKVTSQVLPAVLERVHNRRGREFIRICLQFDPDRRPSAAE-LREHPFLVDQNEEED 729
            + VAWN ++I  LP  EK RII EV+LL  L+HKN++ F+GSW ++EK QVVF+TEI+  G+L  +I+RV+ I+WK+IKRW  QIL+GLHYLHN+ +PP+IHRDLKCDNIF+NG++GD+RIGDLGLST     +  K  SVLGTPEFMAPELYDESY+EKVDIYAFGMC+LEM+TKE PYSEC N AQIYKKVT+ + P  L+RV ++  R+FI +CL          AE L  HPFL  Q+++ D
Sbjct:   50 IDVAWNAIDIGLLPTTEKTRIIQEVQLLQKLEHKNIINFYGSWFSKEKNQVVFITEIMTSGTLKSYIKRVQFIKWKIIKRWCIQILEGLHYLHNQ-SPPVIHRDLKCDNIFVNGNTGDLRIGDLGLSTQLAVDKRAKAQSVLGTPEFMAPELYDESYDEKVDIYAFGMCVLEMVTKEVPYSECINPAQIYKKVTAGIRPKGLQRVVSQAARDFIELCLSRGNGLVDVTAEYLLNHPFLKAQDDDND 294          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5753.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR50_ECTSI5.080e-13568.63Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A835Z3R9_9STRA1.650e-13074.60Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835YJM9_9STRA4.160e-12975.00Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S4A5B1_9STRA1.720e-10560.85Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A8J9TZH4_PHATR7.090e-10462.10Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
F0Y9K5_AURAN1.670e-10261.86Protein kinase domain-containing protein (Fragment... [more]
W7THI3_9STRA5.330e-10269.96Non-specific serine/threonine protein kinase n=2 T... [more]
B8C7K0_THAPS6.960e-10263.03Mitogen activated protein kinase-like protein (Fra... [more]
A0A7S4SMA1_9STRA1.330e-10056.85Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A421FJA9_9STRA1.040e-9860.57Protein kinase domain-containing protein n=3 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5753contigP-wetherbeei_contig5753:51..2988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2850.Phatr11403
PFAMsPkinase
Model size903
Max annot lvl2836|Bacillariophyta
KEGG koko:K08867
Hectar predicted targeting categoryother localisation
Exons7
Evalue1.16e-104
EggNOG OGsKOG0584@1|root,KOG0584@2759|Eukaryota,2XA6V@2836|Bacillariophyta
EC2.7.11.1
DescriptionProtein tyrosine kinase
Cds size903
COG categoryS
BRITEko00000,ko01000,ko01001,ko01009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5753.1.1prot_P-wetherbeei_contig5753.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5753 51..2988 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186853.1119506-CDS-P-wetherbeei_contig5753:50..2151683186853.1119506-CDS-P-wetherbeei_contig5753:50..215Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5753 51..215 -
1683186853.1236777-CDS-P-wetherbeei_contig5753:556..7121683186853.1236777-CDS-P-wetherbeei_contig5753:556..712Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5753 557..712 -
1683186853.1317902-CDS-P-wetherbeei_contig5753:1045..11531683186853.1317902-CDS-P-wetherbeei_contig5753:1045..1153Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5753 1046..1153 -
1683186853.1396966-CDS-P-wetherbeei_contig5753:1369..15251683186853.1396966-CDS-P-wetherbeei_contig5753:1369..1525Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5753 1370..1525 -
1683186853.147842-CDS-P-wetherbeei_contig5753:1868..20361683186853.147842-CDS-P-wetherbeei_contig5753:1868..2036Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5753 1869..2036 -
1683186853.1560395-CDS-P-wetherbeei_contig5753:2283..23611683186853.1560395-CDS-P-wetherbeei_contig5753:2283..2361Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5753 2284..2361 -
1683186853.1652946-CDS-P-wetherbeei_contig5753:2916..29881683186853.1652946-CDS-P-wetherbeei_contig5753:2916..2988Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5753 2917..2988 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5753.1.1

>prot_P-wetherbeei_contig5753.1.1 ID=prot_P-wetherbeei_contig5753.1.1|Name=mRNA_P-wetherbeei_contig5753.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=301bp
MQVAWNTVNIKQLPKEEKRRIINEVRLLHGLDHKNLVQFHGSWVNREKEQ
VVFVTEILPGGSLMDFIRRVELIRWKVIKRWARQILKGLHYLHNEHNPPI
IHRDLKCDNIFINGHSGDIRIGDLGLSTSNVRSDKTMSVLGTPEFMAPEL
YDESYNEKVDIYAFGMCMLEMITKERPYSECANAAQIYKKVTSQVLPAVL
ERVHNRRGREFIRICLQFDPDRRPSAAELREHPFLVDQNEEEDNEQVYLD
PPEAVEAGGGGGGGGGGGPSMRDVALRDAATLPGTSHPAQKGAPTLGTIQ
E
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mRNA from alignment at P-wetherbeei_contig5753:51..2988-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5753.1.1 ID=mRNA_P-wetherbeei_contig5753.1.1|Name=mRNA_P-wetherbeei_contig5753.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2938bp|location=Sequence derived from alignment at P-wetherbeei_contig5753:51..2988- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGTGGCGTGGAATACGGTGAATATAAAGCAGCTGCCGAAGGAGGA GAAGCGCCGTATCATCAACGAGGTGTGTGCATGGCGGTTTTCTTCTTTCG TCAGGACGGTGGGGGAGGCAGTCGTGTGATTTCTGCCTTCTATTGCTGGG AAACTTTCTGTTTTCCCTATCTTACGGCTAGGATAGCGGCGTCGGGATTT CAGGCCTTTCCTTGGCAATTTTGATTGGCTCTAGGGTATGTCTTGTACAG TCCTTTTTGTCATCTATGCTCCTTTTGAATTTTGACATTTGTGCAATTTC ACTTGAATATCTCATTGCAAGTGACAGTTGCAAAGTTGTAGGCCACTGGC GCTTGCGCTTTGGAGACATTGCCTGGTCTGGATCTTGAGCGTTGGACGCC ACACACTTCCTTCGCCTCGATTTATGTTTCTTGAACCGGAAACCGCCGTT CAGTGTTTCCGAACTACGGGATCTTATTGTTGCCTCAGTCTTCCCCCCGC GACCACCGCGTTGCTGGCTCCTCTTTACCAATGGAGAAAGCGCTCCTCTG TTTTCTGCCCGTTCTTGCTGGGCGGCTGGGTCGTGTCAATGCGTCGCTGT TTTCCTTCTGCTTCGGCTGCTCGGCAGGTGCGGCTGCTGCACGGGCTCGA CCACAAAAACCTCGTTCAGTTTCACGGGTCCTGGGTCAACCGCGAGAAGG AACAGGTGCGGTGCAAGTGGCCGAATGGACGGTAGAATGGATCACGGTAG GACAGCCGGTCGGTAGCTGTATTTTCCTTCTTGTTTCGGCCTTCGTCCTT CAAGCGGCTTATAGCGTGAGGCATCGCAAATTCGATGTACATCACGAATC GCCCACGGCATCATCGAACTTACGATTTTGCCGATCTTTCGTCATGAACC ATTGCCGGTCTTTCTGGACTCCAAATCTGCTGTCTCGTCTGCCGGCCCAC AGGTGGTGTTCGTGACGGAGATCCTTCCCGGCGGTTCGCTGATGGACTTC ATCCGGCGTGTGGAGCTGATTCGCTGGAAGGTTATCAAGCGGTGGGCGCG GCAGATCCTGAAGGGGCTCCACTACCTCCACAACGAGCACAACCCGCCCA TCATTCACCGTGACCTCAAGGTACGTCCCTTCTTTGTGTCTGTGCTGCGA TTTCGCATGCTGCGGTCCATTCTTGCAATCTGCGGTGCATTTCCGGTTGA CGCGAAGAGCGTGGTTGTTGCATGTGTCGATTCCGTGGCAGCCTGCAGAA CGTCCAAATCACCCCATGCATGCCAACCGGTCCGTGACCGACCTGCGCCA GCTTGAAACTGGTCTGCATGTTTCCCTATTTGAACGGAACTGATGTTTCT GAAAATAGTGTTTCTGAATAGCTAACGTTTTCCAAGCGCCAACGAATGAA CTAACCGCCAACCAACCCAACCAAACCGCAACCGCGAACGGGATCGCCGA ACGAACACTGCAGTGCGACAACATCTTCATCAACGGGCACAGCGGGGACA TCCGCATTGGCGACCTCGGGCTGTCGACGTCCAACGTGCGGTCCGACAAG ACCATGAGCGTCCTCGGCACGCCCGAGTTCATGGCCCCCGAGCTCTACGA CGAATCTTACAACGAAAAGGTCAGAGAAGGATCTATCTTTCTTTCCTTGG AAGCCCTTTGTGCTGGATTTCATCGGCGTTTCCTCGCTTGGACTTGTTCG AAAGGTGCCGCTTGTTTTTGGACCGCAGAACCTTGACAATCGGCCACGGA ACTCTCTGTAACGCGTTCATTTTTATAACCGTTCTGGTAACCGTCCTTGT AAACGGTCGTCGAAACCGCTTTGCCGTCGCCCCAGGTGGACATCTACGCG TTTGGGATGTGCATGCTGGAGATGATCACGAAGGAGCGCCCCTACAGTGA GTGCGCCAATGCCGCCCAGATCTACAAAAAGGTCACCAGCCAGGTGCGGT CGGACAGAGAGGCAGGATGCACGACGGATCGAAACCTTGCTCACCAGTCG CACTGTTTTGAAGAGGAAGCAGCTTTGGCGTGCGATTGTGTGTGTCCCTC GTTCTCATGCCGCCTTCCCACACTTGGCCTGCAGCATCCTCCTTTCCTGT GGAGCTTCTCAGTTTCCCCCTCCCGGTTCCCTTCGGTGTGGAACCTTATA CCCGCCGGGCCCGACACCGACCACTCTTTTTCTTCCTTCTTGCCGGTTTC CAACCGCCCTTCTGCGCTGCGGCTCTGCCTGTCTCCGCCCCCGCCTTGCT GCCTTTATTTATGCCCACCTTCGCAGGTGCTGCCGGCTGTGCTTGAGCGG GTGCACAACCGGCGCGGCCGCGAGTTCATCCGCATCTGCCTGCAGTTCGA CCCCGACCGCCGCCCGTCCGCCGCTGAGCTGCGCGAGCACCCCTTCCTCG TCGACCAGAACGAGGAAGAGGACAATGAGCAGGTCGGCTCCAGCCGCTTT ATCCAGTCGATTTGGGCAGTGATGTCGATTGGGGCGGTTTGACTGGGTTC GTTCGTCGCGTTGCTTTTGGTTCTGTTGTCGTCGACTCTTGTTGGTTGGC TTCGCTTGTCGTCGGTTTCGTTGTGCGGTACTGGTTGCGGTGGGACGCGT GCCTGTTCGGGAAGGGAAGCGGCGACAGAGGGAGGGAGCATTGCGAGACG ATCGAAAACCCGGCGCTCCCTTTTCCCTTTCCTTGGATCCATTGGTTATC TGTTTCCCGCCTCTTTTCCGCGATTCGTCCATCAATCTCTTCTTCTCTTT CGCCGCTCTTCCCGCTTGCGCAGGTGTACCTCGACCCACCGGAAGCTGTC GAAGCTGGCGGCGGTGGCGGCGGCGGCGGTGGCGGCGGCCCGTCCATGCG AGACGTGGCGCTCCGCGACGCAGCCACGCTGCCCGGCACGTCCCACCCGG CGCAGAAAGGTGCGCCGACGCTCGGGACCATCCAGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5753:51..2988-

>mRNA_P-wetherbeei_contig5753.1.1 ID=mRNA_P-wetherbeei_contig5753.1.1|Name=mRNA_P-wetherbeei_contig5753.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=903bp|location=Sequence derived from alignment at P-wetherbeei_contig5753:51..2988- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGTGGCGTGGAATACGGTGAATATAAAGCAGCTGCCGAAGGAGGA
GAAGCGCCGTATCATCAACGAGGTGCGGCTGCTGCACGGGCTCGACCACA
AAAACCTCGTTCAGTTTCACGGGTCCTGGGTCAACCGCGAGAAGGAACAG
GTGGTGTTCGTGACGGAGATCCTTCCCGGCGGTTCGCTGATGGACTTCAT
CCGGCGTGTGGAGCTGATTCGCTGGAAGGTTATCAAGCGGTGGGCGCGGC
AGATCCTGAAGGGGCTCCACTACCTCCACAACGAGCACAACCCGCCCATC
ATTCACCGTGACCTCAAGTGCGACAACATCTTCATCAACGGGCACAGCGG
GGACATCCGCATTGGCGACCTCGGGCTGTCGACGTCCAACGTGCGGTCCG
ACAAGACCATGAGCGTCCTCGGCACGCCCGAGTTCATGGCCCCCGAGCTC
TACGACGAATCTTACAACGAAAAGGTGGACATCTACGCGTTTGGGATGTG
CATGCTGGAGATGATCACGAAGGAGCGCCCCTACAGTGAGTGCGCCAATG
CCGCCCAGATCTACAAAAAGGTCACCAGCCAGGTGCTGCCGGCTGTGCTT
GAGCGGGTGCACAACCGGCGCGGCCGCGAGTTCATCCGCATCTGCCTGCA
GTTCGACCCCGACCGCCGCCCGTCCGCCGCTGAGCTGCGCGAGCACCCCT
TCCTCGTCGACCAGAACGAGGAAGAGGACAATGAGCAGGTGTACCTCGAC
CCACCGGAAGCTGTCGAAGCTGGCGGCGGTGGCGGCGGCGGCGGTGGCGG
CGGCCCGTCCATGCGAGACGTGGCGCTCCGCGACGCAGCCACGCTGCCCG
GCACGTCCCACCCGGCGCAGAAAGGTGCGCCGACGCTCGGGACCATCCAG
GAG
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