mRNA_P-wetherbeei_contig57514.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57514.1.1
Unique NamemRNA_P-wetherbeei_contig57514.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57514.1.1 vs. uniprot
Match: A0A6N7H1I2_9HYPH (Pyruvate dehydrogenase (Acetyl-transferring) E1 component subunit alpha n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7H1I2_9HYPH)

HSP 1 Score: 308 bits (788), Expect = 2.930e-103
Identity = 147/165 (89.09%), Postives = 156/165 (94.55%), Query Frame = 1 
Query:    1 EGVAVGIATALGPSDYLYGTHRSHGHFLARGTDPKALMAELAGKDTGLCRGRGGSMHIVDAGRRLMTATGIVGGTIPLALGTALVAREEGNVVAVFFGDGASNTGSFHECLNMAALWKLPVVLVCENNGYAEFTPMSAHTVVSHVSIHGQPYGIPSQIIDGNDTL 495
            EGVAVG+ATA+G  DYLYGTHRSHGHFLARG DP  LMAELAGKDTG CRGRGGSMHIV+ GRRLM+ATGIVGGTIPLALGTALVAREEGNVVAV+FGDGASNTGSFHECLNMA+LWKLPVVLVCENNGYAEFTPMSAHTVVSHVS+HGQPY + SQI+DGNDTL
Sbjct:   55 EGVAVGVATAMGDDDYLYGTHRSHGHFLARGADPNGLMAELAGKDTGCCRGRGGSMHIVEVGRRLMSATGIVGGTIPLALGTALVAREEGNVVAVYFGDGASNTGSFHECLNMASLWKLPVVLVCENNGYAEFTPMSAHTVVSHVSVHGQPYDMASQIVDGNDTL 219
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BLAST of mRNA_P-wetherbeei_contig57514.1.1 vs. uniprot
Match: A0A1Q7QJM0_9CHLR (E1_dh domain-containing protein n=5 Tax=unclassified Chloroflexi TaxID=189774 RepID=A0A1Q7QJM0_9CHLR)

HSP 1 Score: 213 bits (543), Expect = 2.110e-66
Identity = 103/167 (61.68%), Postives = 130/167 (77.84%), Query Frame = 1 
Query:    1 EGVAVGIATALGPSDYLYGTHRSHGHFLARGTDPKALMAELAGKDTGLCRGRGGSMHIVDAGRRLMTATGIVGGTIPLALGTALVARE--EGNVVAVFFGDGASNTGSFHECLNMAALWKLPVVLVCENNGYAEFTPMSAHTVVSHVSIHGQPYGIPSQIIDGNDTL 495
            E VAVG+  AL  SD +Y +HR+HGHFLARG+DP  ++AE+ G+  GLC G+GGSMH+VD    L+ A+G+VGGTIPLALG+ALVAR+   G+V  VFFGDGA+ TG FHE LN+A+LW LPV+LVCENNGYAEFTP SAHT V+HV     PY I ++++DGND +
Sbjct:   31 EAVAVGVMDALRASDVVYSSHRAHGHFLARGSDPGRVLAEVMGRRDGLCGGKGGSMHLVDREHGLLGASGVVGGTIPLALGSALVARDAGRGDVAVVFFGDGAAQTGHFHESLNLASLWSLPVLLVCENNGYAEFTPRSAHTKVAHVVGLAAPYRIAARVVDGNDVI 197
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BLAST of mRNA_P-wetherbeei_contig57514.1.1 vs. uniprot
Match: A0A1F9KD43_9DELT (E1_dh domain-containing protein n=2 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A1F9KD43_9DELT)

HSP 1 Score: 213 bits (542), Expect = 4.780e-66
Identity = 101/167 (60.48%), Postives = 126/167 (75.45%), Query Frame = 1 
Query:    1 EGVAVGIATALGPSDYLYGTHRSHGHFLARGTDPKALMAELAGKDTGLCRGRGGSMHIVDAGRRLMTATGIVGGTIPLALGTALVARE--EGNVVAVFFGDGASNTGSFHECLNMAALWKLPVVLVCENNGYAEFTPMSAHTVVSHVSIHGQPYGIPSQIIDGNDTL 495
            EGVAVG+ + L   DY++G HR+H H +A+G D   LMAELAG+ TG CRG+GGSMH+V      +TATG+VGG IPLALG A V +E  +G V AV FGDGA   G+FHE LN+A+LWKLPV+ VCENNGYAEFTP+SAHT+VS ++ H + YGIP+  +DGND L
Sbjct:   46 EGVAVGVCSLLRRDDYIFGGHRAHAHVIAKGADLGRLMAELAGRSTGYCRGKGGSMHVVAMDVGFVTATGVVGGNIPLALGAAFVCKERGKGQVAAVVFGDGAGQVGAFHESLNIASLWKLPVIFVCENNGYAEFTPLSAHTLVSRLADHARTYGIPNTTVDGNDVL 212
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BLAST of mRNA_P-wetherbeei_contig57514.1.1 vs. uniprot
Match: A0A535BPH7_9DELT (Thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A535BPH7_9DELT)

HSP 1 Score: 212 bits (539), Expect = 1.360e-65
Identity = 101/167 (60.48%), Postives = 124/167 (74.25%), Query Frame = 1 
Query:    1 EGVAVGIATALGPSDYLYGTHRSHGHFLARGTDPKALMAELAGKDTGLCRGRGGSMHIVDAGRRLMTATGIVGGTIPLALGTALVARE--EGNVVAVFFGDGASNTGSFHECLNMAALWKLPVVLVCENNGYAEFTPMSAHTVVSHVSIHGQPYGIPSQIIDGNDTL 495
            E VAVG    L   DY++G+HRSHGH +A+G D   LMAE+AG+ TG C G+GGSMHIV      +TATG+VGGTIPLALG A  A+E  +G V  VFFGDGA   G+FHE LN+A+LW+LPV+ VCENNGYAEFTP+SAHT V  ++ H + YGIPS+ +DGND L
Sbjct:   48 EAVAVGTCAQLRQDDYVFGSHRSHGHAIAKGADINRLMAEIAGRATGYCAGKGGSMHIVAMDAGFVTATGVVGGTIPLALGAAFAAKERSKGQVAVVFFGDGAGQAGAFHESLNIASLWRLPVIFVCENNGYAEFTPLSAHTKVERLAEHAKTYGIPSRTVDGNDLL 214
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BLAST of mRNA_P-wetherbeei_contig57514.1.1 vs. uniprot
Match: A0A1F9LNB1_9DELT (E1_dh domain-containing protein n=2 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A1F9LNB1_9DELT)

HSP 1 Score: 210 bits (534), Expect = 7.280e-65
Identity = 100/167 (59.88%), Postives = 125/167 (74.85%), Query Frame = 1 
Query:    1 EGVAVGIATALGPSDYLYGTHRSHGHFLARGTDPKALMAELAGKDTGLCRGRGGSMHIVDAGRRLMTATGIVGGTIPLALGTALVAREEGN--VVAVFFGDGASNTGSFHECLNMAALWKLPVVLVCENNGYAEFTPMSAHTVVSHVSIHGQPYGIPSQIIDGNDTL 495
            E VAVG+ + L   DY++G HRSHGH +A+G +   LMAELAG+ TG C G+GGSMH+V      +TATG+VGGTIPLALG A V +E+G   V  VFFGDGA   G+FHE LN+A+LWKLPV+ VCENNGYAEFTP+SAHT+VS ++ H Q Y IP+  +DGN+ L
Sbjct:   46 EAVAVGVCSLLQADDYIFGGHRSHGHAIAKGAELGRLMAELAGRSTGYCGGKGGSMHLVAMESGFVTATGVVGGTIPLALGAAFVCKEKGRGQVAVVFFGDGAGQAGAFHESLNIASLWKLPVIFVCENNGYAEFTPLSAHTLVSRLANHAQTYSIPNVTVDGNEIL 212
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BLAST of mRNA_P-wetherbeei_contig57514.1.1 vs. uniprot
Match: A0A7C3NP06_9DELT (Thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C3NP06_9DELT)

HSP 1 Score: 209 bits (532), Expect = 1.640e-64
Identity = 101/165 (61.21%), Postives = 121/165 (73.33%), Query Frame = 1 
Query:    1 EGVAVGIATALGPSDYLYGTHRSHGHFLARGTDPKALMAELAGKDTGLCRGRGGSMHIVDAGRRLMTATGIVGGTIPLALGTALVARE--EGNVVAVFFGDGASNTGSFHECLNMAALWKLPVVLVCENNGYAEFTPMSAHTVVSHVSIHGQPYGIPSQIIDGND 489
            E VAVG    L   D +YGTHRSHGH +A+G D   LMAE+AG+ TG C G+GGSMHIV      MTATG+VGGTIPLALG A   +E  +G V  VFFGDGA+ TG FHE LN+A+LW+LPV+ +CENNGYAEFTP+SAHT +  ++ H + YGIPS  IDGND
Sbjct:   48 EAVAVGALALLAHDDLVYGTHRSHGHAIAKGADLDKLMAEIAGRATGYCGGKGGSMHIVARECGFMTATGVVGGTIPLALGAAFACKERKQGRVAVVFFGDGAAQTGPFHESLNIASLWRLPVIFICENNGYAEFTPLSAHTRIERLAQHAKTYGIPSSTIDGND 212
[Close]
BLAST of mRNA_P-wetherbeei_contig57514.1.1 vs. uniprot
Match: A0A6I1R3A1_9DELT (Pyruvate dehydrogenase (Acetyl-transferring) E1 component subunit alpha n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A6I1R3A1_9DELT)

HSP 1 Score: 208 bits (529), Expect = 4.780e-64
Identity = 101/167 (60.48%), Postives = 121/167 (72.46%), Query Frame = 1 
Query:    1 EGVAVGIATALGPSDYLYGTHRSHGHFLARGTDPKALMAELAGKDTGLCRGRGGSMHIVDAGRRLMTATGIVGGTIPLALGTALVARE--EGNVVAVFFGDGASNTGSFHECLNMAALWKLPVVLVCENNGYAEFTPMSAHTVVSHVSIHGQPYGIPSQIIDGNDTL 495
            E VAVG  + L P DY++G HRSHGH LA+G D   LMAE+AG+ TG C G+GGSMHIV      +TATG+VGGTIPLALG A  A+E  +G V  VFFGDGA   G FHE LN+A+LW+LPV+ VCENNGYAEFTP+SAHT V  ++ H + Y I S  +DGND L
Sbjct:   48 EAVAVGTCSLLRPDDYVFGGHRSHGHALAKGADVNRLMAEIAGRATGYCGGKGGSMHIVALEAGFVTATGVVGGTIPLALGAAFAAKEKKQGQVAVVFFGDGAGQAGPFHESLNIASLWRLPVIFVCENNGYAEFTPLSAHTKVERLAQHAKTYDISSSTVDGNDLL 214
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BLAST of mRNA_P-wetherbeei_contig57514.1.1 vs. uniprot
Match: A0A1Y0BQ58_9BACT (L803 n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A1Y0BQ58_9BACT)

HSP 1 Score: 207 bits (526), Expect = 1.240e-63
Identity = 98/165 (59.39%), Postives = 122/165 (73.94%), Query Frame = 1 
Query:    1 EGVAVGIATALGPSDYLYGTHRSHGHFLARGTDPKALMAELAGKDTGLCRGRGGSMHIVDAGRRLMTATGIVGGTIPLALGTALVARE--EGNVVAVFFGDGASNTGSFHECLNMAALWKLPVVLVCENNGYAEFTPMSAHTVVSHVSIHGQPYGIPSQIIDGND 489
            E VAVG+ + L   D++YG HRSHGH +A+G D   LMAE+AG+ TG C G+GGSMHIV      +TATG+VGGTIPLALG A  A+E  +G V  VFFGDGA   G FHE LN+A+LW+LPV+ VCENNGYAEFTP+SAHT +  ++ H + YGIP+  +DGND
Sbjct:   46 EAVAVGVCSLLRTDDFVYGGHRSHGHAIAKGADINRLMAEIAGRATGYCGGKGGSMHIVAKECGFITATGVVGGTIPLALGAAFAAKERKKGQVAVVFFGDGAGQAGPFHESLNIASLWRLPVIFVCENNGYAEFTPLSAHTKIERLAQHAKTYGIPASTVDGND 210
[Close]
BLAST of mRNA_P-wetherbeei_contig57514.1.1 vs. uniprot
Match: A0A6L7NCA7_9ACTN (Thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L7NCA7_9ACTN)

HSP 1 Score: 204 bits (520), Expect = 9.180e-63
Identity = 101/167 (60.48%), Postives = 120/167 (71.86%), Query Frame = 1 
Query:    1 EGVAVGIATALGPSDYLYGTHRSHGHFLARGTDPKALMAELAGKDTGLCRGRGGSMHIVDAGRRLMTATGIVGGTIPLALGTAL--VAREEGNVVAVFFGDGASNTGSFHECLNMAALWKLPVVLVCENNGYAEFTPMSAHTVVSHVSIHGQPYGIPSQIIDGNDTL 495
            EG AVG   ALG SDY++GTHRSH H +A+G D + LMAE+AG+ TG C+G+GGSMHI       +TATG+V G IPLALG AL  V R E  V   FFGDGA  +G FHE LNMAALWKLPVVLVCENNGY EF+P+SAHTVV  ++ +   Y IP+  +DG D L
Sbjct:   46 EGSAVGTCAALGRSDYVFGTHRSHAHAIAKGADLRRLMAEIAGRSTGYCKGKGGSMHISAPEVGFVTATGVVAGNIPLALGAALTSVTRNEDRVSVAFFGDGAGQSGPFHESLNMAALWKLPVVLVCENNGYVEFSPLSAHTVVERLADYASVYSIPAVTVDGGDVL 212
[Close]
BLAST of mRNA_P-wetherbeei_contig57514.1.1 vs. uniprot
Match: A0A534UYV7_9DELT (Thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534UYV7_9DELT)

HSP 1 Score: 201 bits (510), Expect = 3.050e-61
Identity = 96/165 (58.18%), Postives = 119/165 (72.12%), Query Frame = 1 
Query:    1 EGVAVGIATALGPSDYLYGTHRSHGHFLARGTDPKALMAELAGKDTGLCRGRGGSMHIVDAGRRLMTATGIVGGTIPLALGTALVAREE--GNVVAVFFGDGASNTGSFHECLNMAALWKLPVVLVCENNGYAEFTPMSAHTVVSHVSIHGQPYGIPSQIIDGND 489
            E VAVG  + L   DY++G HRSHGH +A+G D   LMAE+AG+ TG C G+GGSMHIV      +TATG+VGGTIPLALG A  A+E+  G V  VFFGDGA   G FHE LN+A+LW+LPV+ +CENNGYAEFTP+S HT V  ++ H + Y IP+  +DGND
Sbjct:   46 EAVAVGACSWLRNDDYVFGGHRSHGHAIAKGADINRLMAEIAGRATGYCGGKGGSMHIVAKEAGFITATGVVGGTIPLALGAAFAAKEKKKGQVAVVFFGDGAGQAGPFHESLNIASLWQLPVIFICENNGYAEFTPLSTHTKVERLAQHAKTYAIPASTVDGND 210
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57514.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6N7H1I2_9HYPH2.930e-10389.09Pyruvate dehydrogenase (Acetyl-transferring) E1 co... [more]
A0A1Q7QJM0_9CHLR2.110e-6661.68E1_dh domain-containing protein n=5 Tax=unclassifi... [more]
A0A1F9KD43_9DELT4.780e-6660.48E1_dh domain-containing protein n=2 Tax=unclassifi... [more]
A0A535BPH7_9DELT1.360e-6560.48Thiamine pyrophosphate-dependent dehydrogenase E1 ... [more]
A0A1F9LNB1_9DELT7.280e-6559.88E1_dh domain-containing protein n=2 Tax=unclassifi... [more]
A0A7C3NP06_9DELT1.640e-6461.21Thiamine pyrophosphate-dependent dehydrogenase E1 ... [more]
A0A6I1R3A1_9DELT4.780e-6460.48Pyruvate dehydrogenase (Acetyl-transferring) E1 co... [more]
A0A1Y0BQ58_9BACT1.240e-6359.39L803 n=1 Tax=uncultured bacterium TaxID=77133 RepI... [more]
A0A6L7NCA7_9ACTN9.180e-6360.48Thiamine pyrophosphate-dependent dehydrogenase E1 ... [more]
A0A534UYV7_9DELT3.050e-6158.18Thiamine pyrophosphate-dependent dehydrogenase E1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57514contigP-wetherbeei_contig57514:15..509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog469383.Cwoe_4083
PFAMsE1_dh
Model size495
Max annot lvl201174|Actinobacteria
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00161
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230
KEGG ModuleM00307
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.9e-60
EggNOG OGsCOG1071@1|root,COG1071@2|Bacteria,2HVS4@201174|Actinobacteria
EC1.2.4.1
DescriptionDehydrogenase E1 component
Cds size495
COG categoryC
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186852.9386642-CDS-P-wetherbeei_contig57514:14..5091683186852.9386642-CDS-P-wetherbeei_contig57514:14..509Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57514 15..509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57514.1.1prot_P-wetherbeei_contig57514.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57514 15..509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57514.1.1

>prot_P-wetherbeei_contig57514.1.1 ID=prot_P-wetherbeei_contig57514.1.1|Name=mRNA_P-wetherbeei_contig57514.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=165bp
EGVAVGIATALGPSDYLYGTHRSHGHFLARGTDPKALMAELAGKDTGLCR
GRGGSMHIVDAGRRLMTATGIVGGTIPLALGTALVAREEGNVVAVFFGDG
ASNTGSFHECLNMAALWKLPVVLVCENNGYAEFTPMSAHTVVSHVSIHGQ
PYGIPSQIIDGNDTL
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mRNA from alignment at P-wetherbeei_contig57514:15..509-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57514.1.1 ID=mRNA_P-wetherbeei_contig57514.1.1|Name=mRNA_P-wetherbeei_contig57514.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig57514:15..509- (Phaeothamnion wetherbeei SAG_119_79)
GAGGGCGTCGCGGTCGGTATCGCCACGGCACTCGGTCCCAGCGACTATCT
CTACGGAACCCATCGCTCTCATGGCCATTTTCTCGCACGGGGCACCGACC
CGAAGGCGCTGATGGCCGAGCTTGCCGGCAAGGATACGGGTTTGTGCCGC
GGGCGCGGCGGCTCGATGCACATCGTCGATGCCGGCCGCCGTCTGATGAC
CGCGACGGGGATCGTCGGCGGCACAATTCCGCTGGCGCTCGGGACGGCGC
TGGTCGCGCGCGAGGAAGGCAATGTGGTTGCGGTCTTCTTCGGCGACGGC
GCCTCCAACACGGGCAGCTTCCACGAGTGCTTGAACATGGCAGCGCTATG
GAAGCTCCCCGTCGTTCTTGTGTGCGAGAACAACGGTTATGCCGAGTTCA
CACCGATGTCGGCGCACACGGTCGTGAGCCACGTCTCCATCCACGGCCAG
CCCTATGGAATCCCCTCCCAGATCATCGACGGCAACGATACGCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57514:15..509-

>mRNA_P-wetherbeei_contig57514.1.1 ID=mRNA_P-wetherbeei_contig57514.1.1|Name=mRNA_P-wetherbeei_contig57514.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig57514:15..509- (Phaeothamnion wetherbeei SAG_119_79)
GAGGGCGTCGCGGTCGGTATCGCCACGGCACTCGGTCCCAGCGACTATCT
CTACGGAACCCATCGCTCTCATGGCCATTTTCTCGCACGGGGCACCGACC
CGAAGGCGCTGATGGCCGAGCTTGCCGGCAAGGATACGGGTTTGTGCCGC
GGGCGCGGCGGCTCGATGCACATCGTCGATGCCGGCCGCCGTCTGATGAC
CGCGACGGGGATCGTCGGCGGCACAATTCCGCTGGCGCTCGGGACGGCGC
TGGTCGCGCGCGAGGAAGGCAATGTGGTTGCGGTCTTCTTCGGCGACGGC
GCCTCCAACACGGGCAGCTTCCACGAGTGCTTGAACATGGCAGCGCTATG
GAAGCTCCCCGTCGTTCTTGTGTGCGAGAACAACGGTTATGCCGAGTTCA
CACCGATGTCGGCGCACACGGTCGTGAGCCACGTCTCCATCCACGGCCAG
CCCTATGGAATCCCCTCCCAGATCATCGACGGCAACGATACGCTT
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