mRNA_P-wetherbeei_contig57498.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57498.1.1
Unique NamemRNA_P-wetherbeei_contig57498.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57498.1.1 vs. uniprot
Match: A0A3C1L786_9ACTN (HTH merR-type domain-containing protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A3C1L786_9ACTN)

HSP 1 Score: 138 bits (347), Expect = 9.450e-37
Identity = 70/96 (72.92%), Postives = 85/96 (88.54%), Query Frame = 1
Query:  223 DAYVAGELCKEAGITDEQLLELESFGLVAGKGTGRSALYTAADVAVAKAAAGFLAHGVGGRHLRAWRQAADREAALYEQLILPLLRQRNPQARQQA 510
            D YVA ELC  AGIT +QL ELES+GL++G+GTG +ALY+A D+A+A+AAAGFLA GV  RHLRAWRQAA+REAAL+EQL+LPL+RQRNPQ+RQQA
Sbjct:  194 DTYVASELCTMAGITSKQLAELESYGLLSGRGTGTNALYSAGDLAIARAAAGFLARGVEPRHLRAWRQAAEREAALFEQLVLPLIRQRNPQSRQQA 289          
BLAST of mRNA_P-wetherbeei_contig57498.1.1 vs. uniprot
Match: A0A7K1B065_9ACTN (MerR family DNA-binding transcriptional regulator n=2 Tax=root TaxID=1 RepID=A0A7K1B065_9ACTN)

HSP 1 Score: 124 bits (312), Expect = 2.060e-31
Identity = 62/97 (63.92%), Postives = 77/97 (79.38%), Query Frame = 1
Query:  220 SDAYVAGELCKEAGITDEQLLELESFGLVAGKGTGRSALYTAADVAVAKAAAGFLAHGVGGRHLRAWRQAADREAALYEQLILPLLRQRNPQARQQA 510
            SD Y   E+C  AG+T  QL +LESFGLV G+GTG S  +T +D+A+ +AAAGFL+ G+  RHLRAWRQ+A+REA L+EQ ILPLLRQRNPQARQ+A
Sbjct:  211 SDVYDRSEICSMAGVTQTQLADLESFGLVTGRGTGSSTTFTESDLAIVRAAAGFLSRGIDARHLRAWRQSAEREAGLFEQRILPLLRQRNPQARQEA 307          
BLAST of mRNA_P-wetherbeei_contig57498.1.1 vs. uniprot
Match: A0A6J6R6R3_9ZZZZ (Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A6J6R6R3_9ZZZZ)

HSP 1 Score: 122 bits (306), Expect = 8.340e-31
Identity = 64/94 (68.09%), Postives = 74/94 (78.72%), Query Frame = 1
Query:  229 YVAGELCKEAGITDEQLLELESFGLVAGKGTGRSALYTAADVAVAKAAAGFLAHGVGGRHLRAWRQAADREAALYEQLILPLLRQRNPQARQQA 510
            Y A ELC  A IT  QL ELESFGL+  +GTG SALYT +D+ +A+A  GFL  GV  RHLRAWRQAADREAAL+EQL+ PL+RQRNPQ+RQQA
Sbjct:  182 YNANELCIHANITGRQLTELESFGLITPRGTGTSALYTNSDLGIARACKGFLERGVEPRHLRAWRQAADREAALFEQLVTPLIRQRNPQSRQQA 275          
BLAST of mRNA_P-wetherbeei_contig57498.1.1 vs. uniprot
Match: A0A6I3CC09_9ACTN (MerR family DNA-binding transcriptional regulator n=3 Tax=root TaxID=1 RepID=A0A6I3CC09_9ACTN)

HSP 1 Score: 107 bits (266), Expect = 1.730e-24
Identity = 81/173 (46.82%), Postives = 105/173 (60.69%), Query Frame = 1
Query:    1 PAAQVRLAA---PPVMSLVGSRSEPASPVVAAAIASPSPAPVVAEPLAPVAADPEPELVRTTAASSPAPAGGRHASSDAYVAGELCKEAGITDEQLLELESFGLVAGKGTGRSALYTAADVAVAKAAAGFLAHGVGGRHLRAWRQAADREAALYEQLILPLLRQRNPQARQQA 510
            PAA V  A+   PPV+++VG+ +EPA P       SP+   V A+P  PVAA       ++ A   P    G   S D     EL   A I++EQL EL+ F +V  +GTG  A Y A  V +A+ AA FL  G+  RHLR+WRQAA+RE+AL+EQ I+PLLRQRNPQ+RQQA
Sbjct:  183 PAAPVEAASASTPPVLTVVGA-NEPAEP-------SPAAPKVAAKPAQPVAAVKPAVATKSPAVDLP----GLPYSRD-----ELRLAAEISEEQLRELDEFAIVPSRGTGADATYQADAVDIARIAARFLEQGIDARHLRSWRQAAERESALFEQRIMPLLRQRNPQSRQQA 338          
BLAST of mRNA_P-wetherbeei_contig57498.1.1 vs. uniprot
Match: A0A6J7E8W7_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J7E8W7_9ZZZZ)

HSP 1 Score: 102 bits (253), Expect = 1.460e-22
Identity = 54/94 (57.45%), Postives = 67/94 (71.28%), Query Frame = 1
Query:  229 YVAGELCKEAGITDEQLLELESFGLVAGKGTGRSALYTAADVAVAKAAAGFLAHGVGGRHLRAWRQAADREAALYEQLILPLLRQRNPQARQQA 510
            Y   EL   +GIT+ QL EL+ FG+V  +G+G  A Y A  V +A+ A  FLA G+  RHLR WRQ A+REAAL+EQ I+PLLRQRNPQ+RQQA
Sbjct:  257 YNRDELLTASGITEAQLSELDEFGIVPSRGSGADATYQADAVEIARVAGKFLAQGIDARHLRPWRQGAEREAALFEQRIMPLLRQRNPQSRQQA 350          
BLAST of mRNA_P-wetherbeei_contig57498.1.1 vs. uniprot
Match: A0A7X7DA29_9ACTN (MerR family transcriptional regulator n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7DA29_9ACTN)

HSP 1 Score: 91.7 bits (226), Expect = 4.230e-19
Identity = 48/92 (52.17%), Postives = 63/92 (68.48%), Query Frame = 1
Query:  235 AGELCKEAGITDEQLLELESFGLVAGKGTGRSALYTAADVAVAKAAAGFLAHGVGGRHLRAWRQAADREAALYEQLILPLLRQRNPQARQQA 510
            A EL   AG+T+E L ELE FGLV G+  G    Y    + +A+ AA F+ HG+G RHLR ++ AA+REA   EQL +PLL+QRNP+AR+QA
Sbjct:  185 AAELQAAAGLTEESLRELEKFGLVVGRAMGDDTYYDGDALVIARKAASFIDHGIGARHLRMYKVAAEREAGFLEQLAMPLLKQRNPEARRQA 276          
BLAST of mRNA_P-wetherbeei_contig57498.1.1 vs. uniprot
Match: A0A5Q2RLE9_9ACTN (MerR family DNA-binding transcriptional regulator n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RLE9_9ACTN)

HSP 1 Score: 90.9 bits (224), Expect = 7.340e-19
Identity = 46/90 (51.11%), Postives = 68/90 (75.56%), Query Frame = 1
Query:  241 ELCKEAGITDEQLLELESFGLVAGKGTGRSALYTAADVAVAKAAAGFLAHGVGGRHLRAWRQAADREAALYEQLILPLLRQRNPQARQQA 510
            EL + AGIT EQ+ +LE FGL+ G+  G + L+  + + VA+ A+GF+ HGV GRHLR +R AA+REA+ ++Q+++P L+QR+P ARQQA
Sbjct:  179 ELAEAAGITVEQVADLERFGLLTGRSIGPTTLFDESALDVARLASGFIRHGVEGRHLRMYRVAAEREASFFQQVVMPQLKQRHPAARQQA 268          
BLAST of mRNA_P-wetherbeei_contig57498.1.1 vs. uniprot
Match: A0A7W0HAU7_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0HAU7_9ACTN)

HSP 1 Score: 86.7 bits (213), Expect = 3.310e-18
Identity = 43/90 (47.78%), Postives = 64/90 (71.11%), Query Frame = 1
Query:  241 ELCKEAGITDEQLLELESFGLVAGKGTGRSALYTAADVAVAKAAAGFLAHGVGGRHLRAWRQAADREAALYEQLILPLLRQRNPQARQQA 510
            EL   +G+ ++ L ELE FG++ G+  G +  Y    ++VA  AAGF+ +GV  RHLR ++ AADREA  +EQ+++P+L+QRNPQAR+QA
Sbjct:   61 ELASASGLGEDDLKELERFGILTGRRVGANVYYDEEALSVAGMAAGFMKYGVEARHLRMYKTAADREAGFFEQVVMPMLKQRNPQARRQA 150          
BLAST of mRNA_P-wetherbeei_contig57498.1.1 vs. uniprot
Match: A0A537ZH02_9ACTN (MerR family transcriptional regulator n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537ZH02_9ACTN)

HSP 1 Score: 88.2 bits (217), Expect = 9.190e-18
Identity = 56/121 (46.28%), Postives = 78/121 (64.46%), Query Frame = 1
Query:  154 EPELVRTTAASSPAPAGGRHASSDAYVA-GELCKEAGITDEQLLELESFGLV-AGKGTGRSALYTAADVAVAKAAAGFLAHGVGGRHLRAWRQAADREAALYEQLILPLLRQRNPQARQQA 510
            +P  V  T  ++P+  GG  A +   +   EL + AG+T+ Q+ ELES+GL+ A  GT   A Y A    VAK A+GF+ HGV  RHLR +   A+REA LY QL+LPL++QRNPQ+R++A
Sbjct:  165 DPLDVSITGGTTPSDDGGSSADARRELTRSELARVAGLTEHQIDELESYGLLRAISGTADGASYGAEAEVVAKLASGFIRHGVQARHLRVYLHTAEREAGLYAQLLLPLVKQRNPQSREKA 285          
BLAST of mRNA_P-wetherbeei_contig57498.1.1 vs. uniprot
Match: A0A6J7TB44_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J7TB44_9ZZZZ)

HSP 1 Score: 84.7 bits (208), Expect = 1.120e-17
Identity = 50/107 (46.73%), Postives = 71/107 (66.36%), Query Frame = 1
Query:  190 PAPAGGRHASSDAYVAGELCKEAGITDEQLLELESFGLVAGKGTGRSALYTAADVAVAKAAAGFLAHGVGGRHLRAWRQAADREAALYEQLILPLLRQRNPQARQQA 510
            P+ A GR A+   Y   EL + + + +E L ELESF +V    TG  ALY   D+A+A+ A  F   GV  RHL+AW+ AA+REA L+EQ +LPLLR+R+P++RQ++
Sbjct:   21 PSDAVGRPAT---YTRAELLQLSDLQEEVLAELESFHMVTAHQTGSQALYDEHDLAIAEVARAFTEAGVDVRHLKAWKTAAEREAGLFEQRVLPLLRRRSPESRQES 124          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57498.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C1L786_9ACTN9.450e-3772.92HTH merR-type domain-containing protein n=2 Tax=Ac... [more]
A0A7K1B065_9ACTN2.060e-3163.92MerR family DNA-binding transcriptional regulator ... [more]
A0A6J6R6R3_9ZZZZ8.340e-3168.09Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A... [more]
A0A6I3CC09_9ACTN1.730e-2446.82MerR family DNA-binding transcriptional regulator ... [more]
A0A6J7E8W7_9ZZZZ1.460e-2257.45Unannotated protein n=1 Tax=freshwater metagenome ... [more]
A0A7X7DA29_9ACTN4.230e-1952.17MerR family transcriptional regulator n=1 Tax=Acid... [more]
A0A5Q2RLE9_9ACTN7.340e-1951.11MerR family DNA-binding transcriptional regulator ... [more]
A0A7W0HAU7_9ACTN3.310e-1847.78Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A537ZH02_9ACTN9.190e-1846.28MerR family transcriptional regulator n=1 Tax=Acti... [more]
A0A6J7TB44_9ZZZZ1.120e-1746.73Unannotated protein n=1 Tax=freshwater metagenome ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57498contigP-wetherbeei_contig57498:2..511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog390989.JOEG01000006_gene913
Preferred namemerR1
PFAMsMerR,MerR_1
Model size510
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0040007,GO:0044424,GO:0044444,GO:0044464
Exons1
Evalue8.46e-17
EggNOG OGsCOG0789@1|root,COG0789@2|Bacteria,2HBV6@201174|Actinobacteria,4D9KI@85008|Micromonosporales
Descriptionhelix_turn_helix, mercury resistance
Cds size510
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186852.62557-CDS-P-wetherbeei_contig57498:1..5111683186852.62557-CDS-P-wetherbeei_contig57498:1..511Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57498 2..511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57498.1.1prot_P-wetherbeei_contig57498.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57498 2..511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57498.1.1

>prot_P-wetherbeei_contig57498.1.1 ID=prot_P-wetherbeei_contig57498.1.1|Name=mRNA_P-wetherbeei_contig57498.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
PAAQVRLAAPPVMSLVGSRSEPASPVVAAAIASPSPAPVVAEPLAPVAAD
PEPELVRTTAASSPAPAGGRHASSDAYVAGELCKEAGITDEQLLELESFG
LVAGKGTGRSALYTAADVAVAKAAAGFLAHGVGGRHLRAWRQAADREAAL
YEQLILPLLRQRNPQARQQA
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mRNA from alignment at P-wetherbeei_contig57498:2..511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57498.1.1 ID=mRNA_P-wetherbeei_contig57498.1.1|Name=mRNA_P-wetherbeei_contig57498.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig57498:2..511+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGCCGCACAGGTTCGCCTGGCCGCGCCGCCGGTGATGAGCCTCGTCGG CTCGCGCTCTGAACCCGCATCGCCGGTCGTGGCGGCAGCCATCGCCTCGC CCTCTCCGGCACCGGTGGTCGCCGAGCCCCTCGCTCCCGTCGCCGCAGAT CCCGAACCCGAACTCGTCCGCACCACGGCGGCGAGCTCGCCCGCACCTGC CGGTGGTCGGCACGCTTCCAGCGACGCCTACGTCGCCGGTGAGCTGTGCA AGGAAGCGGGCATCACCGACGAGCAGCTGCTCGAGCTGGAATCGTTCGGG CTCGTCGCCGGCAAGGGCACCGGGCGCAGTGCGCTGTACACCGCCGCCGA CGTCGCCGTGGCGAAGGCCGCTGCGGGTTTCTTGGCGCACGGCGTCGGTG GGCGCCACCTGCGCGCGTGGCGCCAGGCGGCCGATCGCGAGGCGGCGCTC TACGAGCAGCTGATCCTGCCGCTGCTGCGCCAGCGCAACCCGCAGGCCCG CCAGCAAGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57498:2..511+

>mRNA_P-wetherbeei_contig57498.1.1 ID=mRNA_P-wetherbeei_contig57498.1.1|Name=mRNA_P-wetherbeei_contig57498.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig57498:2..511+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGCCGCACAGGTTCGCCTGGCCGCGCCGCCGGTGATGAGCCTCGTCGG
CTCGCGCTCTGAACCCGCATCGCCGGTCGTGGCGGCAGCCATCGCCTCGC
CCTCTCCGGCACCGGTGGTCGCCGAGCCCCTCGCTCCCGTCGCCGCAGAT
CCCGAACCCGAACTCGTCCGCACCACGGCGGCGAGCTCGCCCGCACCTGC
CGGTGGTCGGCACGCTTCCAGCGACGCCTACGTCGCCGGTGAGCTGTGCA
AGGAAGCGGGCATCACCGACGAGCAGCTGCTCGAGCTGGAATCGTTCGGG
CTCGTCGCCGGCAAGGGCACCGGGCGCAGTGCGCTGTACACCGCCGCCGA
CGTCGCCGTGGCGAAGGCCGCTGCGGGTTTCTTGGCGCACGGCGTCGGTG
GGCGCCACCTGCGCGCGTGGCGCCAGGCGGCCGATCGCGAGGCGGCGCTC
TACGAGCAGCTGATCCTGCCGCTGCTGCGCCAGCGCAACCCGCAGGCCCG
CCAGCAAGCG
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