mRNA_P-wetherbeei_contig57486.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57486.1.1
Unique NamemRNA_P-wetherbeei_contig57486.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57486.1.1 vs. uniprot
Match: UPI001C3C31CA (beta-galactosidase n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3C31CA)

HSP 1 Score: 216 bits (549), Expect = 6.590e-64
Identity = 113/156 (72.44%), Postives = 130/156 (83.33%), Query Frame = 1 
Query:    1 SDTRLVADPARLAAARTLWMPRGDTLDARFAARVVDWVRAGGALVVTDPNAFARTSTGASLAAVRDQLIGAPLGPVRTGSILQVPPGALGTGVPDDLLSLPIDIPHARAFAAVPAGASVVARFVDGAPAAILNPVGAGRVLAFSADPMSPSVLDEP 468
            +DTRL  +PARLAAART+W+PR DTLDA  AAR+  WVRAGG LVVTDP+AF RT  GASL AVRDQLIGAPLG  R GSIL+V PGALG G PDDLLS+P+D    RAFAAVP GA+V+AR++DGAPAAI+ PVGAGRV+AF+A+PM P VLDEP
Sbjct:  450 ADTRLAREPARLAAARTVWLPRADTLDAGVAARLAAWVRAGGTLVVTDPDAFTRTPRGASLRAVRDQLIGAPLGGARRGSILEVAPGALGGGAPDDLLSIPLDGAPRRAFAAVPGGAAVLARYLDGAPAAIVRPVGAGRVVAFAAEPMEPGVLDEP 605
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BLAST of mRNA_P-wetherbeei_contig57486.1.1 vs. uniprot
Match: UPI001C3D8E5F (hypothetical protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3D8E5F)

HSP 1 Score: 213 bits (541), Expect = 1.000e-62
Identity = 110/156 (70.51%), Postives = 131/156 (83.97%), Query Frame = 1 
Query:    1 SDTRLVADPARLAAARTLWMPRGDTLDARFAARVVDWVRAGGALVVTDPNAFARTSTGASLAAVRDQLIGAPLGPVRTGSILQVPPGALGTGVPDDLLSLPIDIPHARAFAAVPAGASVVARFVDGAPAAILNPVGAGRVLAFSADPMSPSVLDEP 468
            +DTRLV +PARLAAAR++WMPRG+TLDA FA R+  WVRAGG LVVTDP+AF RT +G SLAAVR +LIGA LGP RTGSIL+V PGAL  GVP DLL++P+D P  RAFA VP GA V+ARF+DGAPAA++  VGAGRV+AF++DPMSPS LD+P
Sbjct:  452 ADTRLVREPARLAAARSIWMPRGETLDAGFATRLAAWVRAGGTLVVTDPDAFTRTPSGGSLAAVRAELIGAALGPRRTGSILEVAPGALAAGVPADLLNVPLDTPVRRAFAGVPDGARVLARFIDGAPAALVRSVGAGRVVAFASDPMSPSALDDP 607
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57486.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001C3C31CA6.590e-6472.44beta-galactosidase n=1 Tax=Miltoncostaea marina Ta... [more]
UPI001C3D8E5F1.000e-6270.51hypothetical protein n=1 Tax=Miltoncostaea oceani ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57486contigP-wetherbeei_contig57486:40..507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size468
Hectar predicted targeting categoryother localisation
Exons1
Cds size468
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186852.4673593-CDS-P-wetherbeei_contig57486:39..5071683186852.4673593-CDS-P-wetherbeei_contig57486:39..507Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57486 40..507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57486.1.1prot_P-wetherbeei_contig57486.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57486 40..507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57486.1.1

>prot_P-wetherbeei_contig57486.1.1 ID=prot_P-wetherbeei_contig57486.1.1|Name=mRNA_P-wetherbeei_contig57486.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
SDTRLVADPARLAAARTLWMPRGDTLDARFAARVVDWVRAGGALVVTDPN
AFARTSTGASLAAVRDQLIGAPLGPVRTGSILQVPPGALGTGVPDDLLSL
PIDIPHARAFAAVPAGASVVARFVDGAPAAILNPVGAGRVLAFSADPMSP
SVLDEP
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mRNA from alignment at P-wetherbeei_contig57486:40..507-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57486.1.1 ID=mRNA_P-wetherbeei_contig57486.1.1|Name=mRNA_P-wetherbeei_contig57486.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig57486:40..507- (Phaeothamnion wetherbeei SAG_119_79)
TCGGACACCCGCCTCGTGGCCGATCCCGCGCGACTCGCGGCGGCGCGCAC
GCTGTGGATGCCGCGCGGCGACACCCTCGACGCCCGCTTCGCGGCCCGCG
TGGTCGACTGGGTGCGCGCCGGGGGGGCGCTGGTCGTCACCGACCCGAAC
GCGTTCGCACGGACGTCCACCGGCGCCTCGCTGGCGGCGGTGCGCGATCA
GCTGATCGGGGCGCCGCTCGGCCCGGTGCGCACGGGCTCGATCCTCCAGG
TGCCGCCCGGGGCGCTCGGCACCGGCGTGCCCGACGATCTGCTCAGCCTG
CCCATCGACATCCCCCATGCGCGGGCCTTTGCGGCCGTGCCGGCGGGCGC
GAGCGTGGTGGCGCGGTTCGTGGACGGGGCGCCCGCGGCGATCCTCAACC
CGGTCGGCGCGGGGAGGGTGCTGGCGTTCTCGGCCGATCCCATGAGCCCG
AGCGTGCTCGACGAGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57486:40..507-

>mRNA_P-wetherbeei_contig57486.1.1 ID=mRNA_P-wetherbeei_contig57486.1.1|Name=mRNA_P-wetherbeei_contig57486.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig57486:40..507- (Phaeothamnion wetherbeei SAG_119_79)
TCGGACACCCGCCTCGTGGCCGATCCCGCGCGACTCGCGGCGGCGCGCAC
GCTGTGGATGCCGCGCGGCGACACCCTCGACGCCCGCTTCGCGGCCCGCG
TGGTCGACTGGGTGCGCGCCGGGGGGGCGCTGGTCGTCACCGACCCGAAC
GCGTTCGCACGGACGTCCACCGGCGCCTCGCTGGCGGCGGTGCGCGATCA
GCTGATCGGGGCGCCGCTCGGCCCGGTGCGCACGGGCTCGATCCTCCAGG
TGCCGCCCGGGGCGCTCGGCACCGGCGTGCCCGACGATCTGCTCAGCCTG
CCCATCGACATCCCCCATGCGCGGGCCTTTGCGGCCGTGCCGGCGGGCGC
GAGCGTGGTGGCGCGGTTCGTGGACGGGGCGCCCGCGGCGATCCTCAACC
CGGTCGGCGCGGGGAGGGTGCTGGCGTTCTCGGCCGATCCCATGAGCCCG
AGCGTGCTCGACGAGCCC
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