mRNA_P-wetherbeei_contig57485.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57485.1.1
Unique NamemRNA_P-wetherbeei_contig57485.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57485.1.1 vs. uniprot
Match: A0A4V2XT41_9ACTN (YafY family transcriptional regulator n=1 Tax=Micromonospora sp. KC213 TaxID=2530378 RepID=A0A4V2XT41_9ACTN)

HSP 1 Score: 50.8 bits (120), Expect = 2.210e-5
Identity = 26/74 (35.14%), Postives = 37/74 (50.00%), Query Frame = 1 
Query:    1 YQVEMEIHAPCEAVKEFISPDLAVLDPIDRETTRLVSATESLEWFVWRLSSIPFPMRVIAPPDLAEAFRAFGDR 222
            Y+    +HA    V + +    A L+PID ++ RL S T++LEW  W L S+     V  PP+L    R  G R
Sbjct:  239 YRAVATLHASVTQVADRLGTSTAGLEPIDADSCRLTSHTDTLEWLAWHLLSLGCEFEVHQPPELVAHLRDIGGR 312
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BLAST of mRNA_P-wetherbeei_contig57485.1.1 vs. uniprot
Match: A0A4R4MJB7_9ACTN (WYL domain-containing protein n=3 Tax=Actinomadura TaxID=1988 RepID=A0A4R4MJB7_9ACTN)

HSP 1 Score: 49.7 bits (117), Expect = 5.670e-5
Identity = 22/59 (37.29%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:   19 IHAPCEAVKEFISPDLAVLDPIDRETTRLVSATESLEWFVWRLSSIPFPMRVIAPPDLA 195
            +H P E   E ++    VL+P+DR T RL +A++SL +   R++ +PF   ++ PP+LA
Sbjct:  247 LHVPAEEAAEHVTAWQGVLEPVDRRTCRLHTASDSLRFLAHRITLLPFGYTLLDPPELA 305
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BLAST of mRNA_P-wetherbeei_contig57485.1.1 vs. uniprot
Match: A0A6H1W7H3_9MICO (YafY family transcriptional regulator n=2 Tax=unclassified Leifsonia TaxID=2663824 RepID=A0A6H1W7H3_9MICO)

HSP 1 Score: 49.3 bits (116), Expect = 7.670e-5
Identity = 26/72 (36.11%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:    7 VEMEIHAPCEAVKEFISPDLAVLDPIDRETTRLVSATESLEWFVWRLSSIPFPMRVIAPPDLAEAFRAFGDR 222
            V+  +HAP   V+  I    A  + +D ETTR+  + +S EW ++ L++   P +VIAPP++ E  R +G+R
Sbjct:  241 VDAIVHAPVAQVESAIGR-WATAEAVDAETTRVHLSADSAEWALFGLAAADAPFQVIAPPEVVELARVWGER 311
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57485.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A4V2XT41_9ACTN2.210e-535.14YafY family transcriptional regulator n=1 Tax=Micr... [more]
A0A4R4MJB7_9ACTN5.670e-537.29WYL domain-containing protein n=3 Tax=Actinomadura... [more]
A0A6H1W7H3_9MICO7.670e-536.11YafY family transcriptional regulator n=2 Tax=uncl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57485contigP-wetherbeei_contig57485:215..472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1304865.JAGF01000001_gene68
PFAMsHTH_11,WYL
Model size258
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.46e-08
EggNOG OGsCOG2378@1|root,COG2378@2|Bacteria,2GKTS@201174|Actinobacteria
Descriptiontranscriptional regulator
Cds size246
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186852.409959-CDS-P-wetherbeei_contig57485:214..4601683186852.409959-CDS-P-wetherbeei_contig57485:214..460Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57485 215..460 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186852.4235756-UTR-P-wetherbeei_contig57485:460..4721683186852.4235756-UTR-P-wetherbeei_contig57485:460..472Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig57485 461..472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57485.1.1prot_P-wetherbeei_contig57485.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57485 215..460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57485.1.1

>prot_P-wetherbeei_contig57485.1.1 ID=prot_P-wetherbeei_contig57485.1.1|Name=mRNA_P-wetherbeei_contig57485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=82bp
MEIHAPCEAVKEFISPDLAVLDPIDRETTRLVSATESLEWFVWRLSSIPF
PMRVIAPPDLAEAFRAFGDRMHAIAAASSPAP
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mRNA from alignment at P-wetherbeei_contig57485:215..472-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57485.1.1 ID=mRNA_P-wetherbeei_contig57485.1.1|Name=mRNA_P-wetherbeei_contig57485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig57485:215..472- (Phaeothamnion wetherbeei SAG_119_79)
TACCAGGTGGAGATGGAGATTCACGCCCCCTGCGAGGCGGTCAAGGAGTT
CATCAGCCCCGACCTCGCGGTGCTCGACCCGATCGACCGCGAGACCACCC
GCCTCGTCTCCGCGACCGAGAGCCTGGAGTGGTTCGTCTGGCGGCTGAGC
AGCATCCCGTTCCCGATGCGGGTGATCGCGCCGCCGGACCTGGCGGAGGC
CTTCCGCGCCTTCGGGGACCGCATGCACGCCATCGCCGCGGCGTCCTCCC
CGGCGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57485:215..472-

>mRNA_P-wetherbeei_contig57485.1.1 ID=mRNA_P-wetherbeei_contig57485.1.1|Name=mRNA_P-wetherbeei_contig57485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig57485:215..472- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGATTCACGCCCCCTGCGAGGCGGTCAAGGAGTTCATCAGCCCCGA
CCTCGCGGTGCTCGACCCGATCGACCGCGAGACCACCCGCCTCGTCTCCG
CGACCGAGAGCCTGGAGTGGTTCGTCTGGCGGCTGAGCAGCATCCCGTTC
CCGATGCGGGTGATCGCGCCGCCGGACCTGGCGGAGGCCTTCCGCGCCTT
CGGGGACCGCATGCACGCCATCGCCGCGGCGTCCTCCCCGGCGCCC
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