mRNA_P-wetherbeei_contig5746.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5746.2.1
Unique NamemRNA_P-wetherbeei_contig5746.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5746.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5746contigP-wetherbeei_contig5746:639..2308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size969
Hectar predicted targeting categoryother localisation
Exons3
Cds size966
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186852.1681213-CDS-P-wetherbeei_contig5746:639..11281683186852.1681213-CDS-P-wetherbeei_contig5746:639..1128Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5746 640..1128 -
1683186852.1781077-CDS-P-wetherbeei_contig5746:1476..15991683186852.1781077-CDS-P-wetherbeei_contig5746:1476..1599Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5746 1477..1599 -
1683186852.1872947-CDS-P-wetherbeei_contig5746:1954..23081683186852.1872947-CDS-P-wetherbeei_contig5746:1954..2308Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5746 1955..2308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5746.2.1prot_P-wetherbeei_contig5746.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5746 640..2308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5746.2.1

>prot_P-wetherbeei_contig5746.2.1 ID=prot_P-wetherbeei_contig5746.2.1|Name=mRNA_P-wetherbeei_contig5746.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=322bp
EKCRPKNDTLFLLGDRHRPLFWDNMCSATACLASGGDDRGIGVGRVGPAG
GGGGGSPGGPGGGGVTVLFATAVSVKQWERFREHIENTFKRVAAVVPRRD
IVVLQTMNVWELHDLTNKDAAASAKQIEAYEKFVAEVWVPIVQQYAGLGI
WMGMHYRDMHKVPERYTSTQSNNLLRRLNDAAARALEAGRLRLLEQQQQL
LAEIGGKMDGSTGSGDDDEEEGTGDDDDGSDGKGEESSDQTNQTDETAET
DRATVETARSPQNLPFQLAFIENYDAASPGDEFDTLDGTHPSFAVEARKA
RHVIDAVARHDRWWARREEEEP
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mRNA from alignment at P-wetherbeei_contig5746:639..2308-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5746.2.1 ID=mRNA_P-wetherbeei_contig5746.2.1|Name=mRNA_P-wetherbeei_contig5746.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1670bp|location=Sequence derived from alignment at P-wetherbeei_contig5746:639..2308- (Phaeothamnion wetherbeei SAG_119_79)
GAAAAGTGCCGCCCAAAGAACGACACGCTCTTCCTGCTTGGCGACAGGCA
CCGCCCGCTCTTCTGGGACAACATGTGCTCCGCCACCGCCTGTCTCGCTA
GTGGTGGCGACGACCGCGGCATCGGTGTCGGTCGCGTCGGTCCCGCCGGC
GGCGGCGGCGGCGGCTCCCCGGGTGGCCCCGGCGGCGGCGGCGTGACGGT
CTTGTTCGCGACGGCGGTTAGCGTCAAGCAATGGGAGCGGTTCCGAGAGC
ACATCGAGAACACGTTTAAGCGGGTGGCGGCGGTCGTGCCGAGGCGGGAC
ATTGTGGTGCTGCAGACGATGAACGTGTGGGAGCTGCACGATCTGACGAA
CAAGGCAAGTCTTTTCTGCAGGTATTCTGTGGGGTTTCCTCTTAGCTAAA
CGTTTCTTTTTCTGTACGCGTTGAATCCCAAAGGTGAGGGTTTGTTGTTT
TAACAACGAAGACGAGTGCTTTCAAAGAGACTGCCGGGTTCTTACGCCGT
TATTGCTCCAGGTTCTGCTACTTTGTCTTCAGGAAGCCTTTTTGCGAAGT
CTCCGCAGGTCGAAAGCAATTCTTTGAAACCCTTGATGACCCTATAGCGC
CGCCGTCTTTTGCATACGAACAGCGAACTGAAACGTCCTTTTCTCATCCC
TTTTCCTCTTCGATTTGGTCCTCTTCTCGTGCATGGCGTCGGGCGGGCGG
GACTGGCAGGATGCGGCGGCATCGGCAAAGCAGATCGAGGCGTACGAGAA
GTTCGTGGCGGAGGTGTGGGTGCCCATCGTGCAGCAGTATGCCGGGCTTG
GCATCTGGATGGGCATGCACTACCGGGACATGGTAAGTAATTTCCTGTGT
TCCTTCAATAGTTTCCTGCTTTCGTTTCTTCTCTTTCTTTCCGTTGTTTT
CTCTTTAATTCCTTTGTTTTCTTCCTTTTGCGTTGGTGTGCTTCAACCTT
GGTGTTCTCGTCGTCTGCGTTTCTTTTATACAGCAGAGCTCATGTGTGGT
CAGCTGTTTTCACTGCGGCATTTTTTTGTTTTCTGGGCTTTTTCCTGGTT
TCTCGTGCCTGTTCCCGCCTCCTTGCCGCCTTCCGTTTCCTGAATATGGT
GCAATCCTGTGTCAGCAAGTGTCGCCTTCTACCCTTACCGCATTTTCTGC
CCTCTCTTTCTTCCGCGCTTCTGCTAACAGCACAAGGTGCCCGAGCGTTA
CACGTCGACGCAGAGCAACAATCTGCTCCGCCGGCTCAATGACGCCGCCG
CGCGCGCCCTTGAGGCCGGCCGCCTCCGCCTGCTGGAGCAGCAGCAGCAG
CTCCTTGCGGAGATCGGCGGCAAAATGGACGGCTCGACCGGAAGCGGCGA
CGACGACGAGGAGGAGGGGACAGGAGATGACGACGACGGCAGCGACGGCA
AAGGAGAAGAATCGTCCGACCAAACCAACCAAACTGACGAAACCGCCGAA
ACCGACAGAGCCACTGTGGAAACTGCACGGAGCCCGCAAAACCTGCCGTT
CCAGCTAGCCTTCATCGAAAATTACGACGCCGCCTCGCCCGGCGATGAGT
TCGACACGCTCGACGGCACGCACCCGTCCTTCGCCGTCGAGGCGCGCAAG
GCGCGCCACGTCATCGATGCCGTCGCCCGCCACGACCGCTGGTGGGCACG
GCGGGAGGAGGAAGAGCCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5746:639..2308-

>mRNA_P-wetherbeei_contig5746.2.1 ID=mRNA_P-wetherbeei_contig5746.2.1|Name=mRNA_P-wetherbeei_contig5746.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=966bp|location=Sequence derived from alignment at P-wetherbeei_contig5746:639..2308- (Phaeothamnion wetherbeei SAG_119_79)
GAAAAGTGCCGCCCAAAGAACGACACGCTCTTCCTGCTTGGCGACAGGCA
CCGCCCGCTCTTCTGGGACAACATGTGCTCCGCCACCGCCTGTCTCGCTA
GTGGTGGCGACGACCGCGGCATCGGTGTCGGTCGCGTCGGTCCCGCCGGC
GGCGGCGGCGGCGGCTCCCCGGGTGGCCCCGGCGGCGGCGGCGTGACGGT
CTTGTTCGCGACGGCGGTTAGCGTCAAGCAATGGGAGCGGTTCCGAGAGC
ACATCGAGAACACGTTTAAGCGGGTGGCGGCGGTCGTGCCGAGGCGGGAC
ATTGTGGTGCTGCAGACGATGAACGTGTGGGAGCTGCACGATCTGACGAA
CAAGGATGCGGCGGCATCGGCAAAGCAGATCGAGGCGTACGAGAAGTTCG
TGGCGGAGGTGTGGGTGCCCATCGTGCAGCAGTATGCCGGGCTTGGCATC
TGGATGGGCATGCACTACCGGGACATGCACAAGGTGCCCGAGCGTTACAC
GTCGACGCAGAGCAACAATCTGCTCCGCCGGCTCAATGACGCCGCCGCGC
GCGCCCTTGAGGCCGGCCGCCTCCGCCTGCTGGAGCAGCAGCAGCAGCTC
CTTGCGGAGATCGGCGGCAAAATGGACGGCTCGACCGGAAGCGGCGACGA
CGACGAGGAGGAGGGGACAGGAGATGACGACGACGGCAGCGACGGCAAAG
GAGAAGAATCGTCCGACCAAACCAACCAAACTGACGAAACCGCCGAAACC
GACAGAGCCACTGTGGAAACTGCACGGAGCCCGCAAAACCTGCCGTTCCA
GCTAGCCTTCATCGAAAATTACGACGCCGCCTCGCCCGGCGATGAGTTCG
ACACGCTCGACGGCACGCACCCGTCCTTCGCCGTCGAGGCGCGCAAGGCG
CGCCACGTCATCGATGCCGTCGCCCGCCACGACCGCTGGTGGGCACGGCG
GGAGGAGGAAGAGCCC
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