mRNA_P-wetherbeei_contig57457.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57457.1.1
Unique NamemRNA_P-wetherbeei_contig57457.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57457.1.1 vs. uniprot
Match: UPI001B8A5749 (chemotaxis protein n=2 Tax=Bradyrhizobium TaxID=374 RepID=UPI001B8A5749)

HSP 1 Score: 297 bits (760), Expect = 4.810e-98
Identity = 165/167 (98.80%), Postives = 165/167 (98.80%), Query Frame = 1 
Query:    1 GLTQSSLALDERRFARIVTLLEQLDRASRLKLYFVIARNAMLRGRLAVALLAGERALVLSADASADRERAHFFRGTARVLTDEYDGGLAELKALDRSKLPERDIPLLNATAQLALDMRKPFAGKSAAAADEPAVTPARLDLASSTATLARARTQLGELERLTKGRRP 501
            GLTQSSLALDERRFARIVTLLEQLDRASRLKLYFVIARNAMLRGRLAVALLAGERALVLSADASADRERAHFFRGTARVLTDEYDGGLAELKALDRSKLPERDIPLLNAT QLALDMRKPFAGKSAAAADEPAVTPARLDLA STATLARARTQLGELERLTKGRRP
Sbjct:  227 GLTQSSLALDERRFARIVTLLEQLDRASRLKLYFVIARNAMLRGRLAVALLAGERALVLSADASADRERAHFFRGTARVLTDEYDGGLAELKALDRSKLPERDIPLLNATVQLALDMRKPFAGKSAAAADEPAVTPARLDLALSTATLARARTQLGELERLTKGRRP 393
[Close]
BLAST of mRNA_P-wetherbeei_contig57457.1.1 vs. uniprot
Match: A0A516IYE0_9BRAD (Chemotaxis protein n=1 Tax=Bradyrhizobium cosmicum TaxID=1404864 RepID=A0A516IYE0_9BRAD)

HSP 1 Score: 271 bits (694), Expect = 4.970e-88
Identity = 151/167 (90.42%), Postives = 157/167 (94.01%), Query Frame = 1 
Query:    1 GLTQSSLALDERRFARIVTLLEQLDRASRLKLYFVIARNAMLRGRLAVALLAGERALVLSADASADRERAHFFRGTARVLTDEYDGGLAELKALDRSKLPERDIPLLNATAQLALDMRKPFAGKSAAAADEPAVTPARLDLASSTATLARARTQLGELERLTKGRRP 501
            GLTQSSLALDERRFARIVTLLEQ+DRASRLKLYF IAR+AMLRGRLAV  LAGERALVLSADASADRERAHFFRG ARVLTDEYDGGLAELKALDRSKLPERDIPLLNAT QLALD+RKPFAG  AAAAD+P VTPARLDLASSTATLARA+ QLG+LERLTK RRP
Sbjct:  229 GLTQSSLALDERRFARIVTLLEQIDRASRLKLYFAIARSAMLRGRLAVTELAGERALVLSADASADRERAHFFRGVARVLTDEYDGGLAELKALDRSKLPERDIPLLNATVQLALDVRKPFAGGPAAAADKPPVTPARLDLASSTATLARAQKQLGDLERLTKDRRP 395
[Close]
BLAST of mRNA_P-wetherbeei_contig57457.1.1 vs. uniprot
Match: A0A5P6P9D7_9BRAD (Chemotaxis protein n=5 Tax=Bradyrhizobium TaxID=374 RepID=A0A5P6P9D7_9BRAD)

HSP 1 Score: 267 bits (682), Expect = 3.240e-86
Identity = 148/167 (88.62%), Postives = 155/167 (92.81%), Query Frame = 1 
Query:    1 GLTQSSLALDERRFARIVTLLEQLDRASRLKLYFVIARNAMLRGRLAVALLAGERALVLSADASADRERAHFFRGTARVLTDEYDGGLAELKALDRSKLPERDIPLLNATAQLALDMRKPFAGKSAAAADEPAVTPARLDLASSTATLARARTQLGELERLTKGRRP 501
            GLTQSSLALDERRFARIVTLLEQ+DRASRLKLYFVIAR+AM+RGRLAV  LAGERAL LSADASADRERAHFFRG +R LTDEYDGGLAELKALDRSKLPERDIPLLNAT QLALD+RKPFAG SAA AD+P VTPARLDLASSTATLARA+ QL ELERLTK RRP
Sbjct:  229 GLTQSSLALDERRFARIVTLLEQIDRASRLKLYFVIARSAMVRGRLAVTELAGERALALSADASADRERAHFFRGVSRALTDEYDGGLAELKALDRSKLPERDIPLLNATVQLALDVRKPFAGGSAATADKPPVTPARLDLASSTATLARAQKQLAELERLTKDRRP 395
[Close]
BLAST of mRNA_P-wetherbeei_contig57457.1.1 vs. uniprot
Match: A0A1Q5SCM9_9BRAD (Chemotaxis protein n=2 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=A0A1Q5SCM9_9BRAD)

HSP 1 Score: 258 bits (658), Expect = 1.370e-82
Identity = 142/167 (85.03%), Postives = 153/167 (91.62%), Query Frame = 1 
Query:    1 GLTQSSLALDERRFARIVTLLEQLDRASRLKLYFVIARNAMLRGRLAVALLAGERALVLSADASADRERAHFFRGTARVLTDEYDGGLAELKALDRSKLPERDIPLLNATAQLALDMRKPFAGKSAAAADEPAVTPARLDLASSTATLARARTQLGELERLTKGRRP 501
            GLTQSSLALD+RRFARIVTLLEQ+DRASRLKLY VIAR AMLRGRL+V  LAGERAL LSADASA+RERAHFFRG +RVLTDEYDGGLAELKALDRSKLPERD+PLLNAT QLALD+RKPFA  SAAAAD+P VTPAR+DLASSTATLARA+ QLGELE  T+ RRP
Sbjct:  229 GLTQSSLALDDRRFARIVTLLEQIDRASRLKLYLVIARTAMLRGRLSVTRLAGERALALSADASAERERAHFFRGASRVLTDEYDGGLAELKALDRSKLPERDVPLLNATVQLALDVRKPFARASAAAADKPPVTPARVDLASSTATLARAQKQLGELELFTRDRRP 395
[Close]
BLAST of mRNA_P-wetherbeei_contig57457.1.1 vs. uniprot
Match: A0A1I3G7D6_9BRAD (Chemotaxis protein MotC n=18 Tax=Bradyrhizobium TaxID=374 RepID=A0A1I3G7D6_9BRAD)

HSP 1 Score: 258 bits (658), Expect = 1.450e-82
Identity = 140/167 (83.83%), Postives = 153/167 (91.62%), Query Frame = 1 
Query:    1 GLTQSSLALDERRFARIVTLLEQLDRASRLKLYFVIARNAMLRGRLAVALLAGERALVLSADASADRERAHFFRGTARVLTDEYDGGLAELKALDRSKLPERDIPLLNATAQLALDMRKPFAGKSAAAADEPAVTPARLDLASSTATLARARTQLGELERLTKGRRP 501
            GLTQSSLALDERRFARIVT+LEQ+DR+SRLKLY VIAR+AM+RGR+AV  LAGERAL LSADASA+RERAHFFRG +RVLTDEYDGGLAELKA DRSKLPERD+PLLNAT QLALD+RKPFAG SAA AD+P  TPARLDLASSTATLARAR +LGELE LT+ RRP
Sbjct:  231 GLTQSSLALDERRFARIVTMLEQIDRSSRLKLYLVIARSAMVRGRMAVTRLAGERALALSADASAERERAHFFRGASRVLTDEYDGGLAELKAFDRSKLPERDLPLLNATLQLALDVRKPFAGGSAATADKPPATPARLDLASSTATLARARKELGELEHLTRDRRP 397
[Close]
BLAST of mRNA_P-wetherbeei_contig57457.1.1 vs. uniprot
Match: A0A0R3C1Z6_9BRAD (Chemotaxis protein n=22 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A0R3C1Z6_9BRAD)

HSP 1 Score: 257 bits (657), Expect = 1.720e-82
Identity = 143/167 (85.63%), Postives = 151/167 (90.42%), Query Frame = 1 
Query:    1 GLTQSSLALDERRFARIVTLLEQLDRASRLKLYFVIARNAMLRGRLAVALLAGERALVLSADASADRERAHFFRGTARVLTDEYDGGLAELKALDRSKLPERDIPLLNATAQLALDMRKPFAGKSAAAADEPAVTPARLDLASSTATLARARTQLGELERLTKGRRP 501
            GLTQSSLALDERRFARI  LLEQ+DRASRLKLY VIAR AM+RGRL V  LAGERAL LSADASA+RERAHFFRG +RVLTDEYDGGLAELKALDRSKLPERD+PLLNAT QLALD+RKPFAG SAAAAD+P  TPARLDLASSTATLARA+ QLGELE LTK RRP
Sbjct:  225 GLTQSSLALDERRFARISALLEQIDRASRLKLYLVIARAAMVRGRLTVTRLAGERALTLSADASAERERAHFFRGASRVLTDEYDGGLAELKALDRSKLPERDVPLLNATVQLALDVRKPFAGGSAAAADKPPATPARLDLASSTATLARAQKQLGELELLTKDRRP 391
[Close]
BLAST of mRNA_P-wetherbeei_contig57457.1.1 vs. uniprot
Match: A0A844S2N7_9BRAD (Chemotaxis protein n=9 Tax=Bradyrhizobium TaxID=374 RepID=A0A844S2N7_9BRAD)

HSP 1 Score: 257 bits (656), Expect = 2.510e-82
Identity = 143/167 (85.63%), Postives = 151/167 (90.42%), Query Frame = 1 
Query:    1 GLTQSSLALDERRFARIVTLLEQLDRASRLKLYFVIARNAMLRGRLAVALLAGERALVLSADASADRERAHFFRGTARVLTDEYDGGLAELKALDRSKLPERDIPLLNATAQLALDMRKPFAGKSAAAADEPAVTPARLDLASSTATLARARTQLGELERLTKGRRP 501
            GLTQSSLALDERRFARI  LLEQ+DRASRLKLY VIAR AM+RGRL V  LAGERAL LSADASA+RERAHFFRG +RVLTDEYDGGLAELKALDRSKLPERD+PLLNAT QLALD+RKPFAG SAAAAD+P  TPARLDLASSTATLARA+ QLGELE LTK RRP
Sbjct:  226 GLTQSSLALDERRFARISALLEQVDRASRLKLYLVIARAAMVRGRLTVTRLAGERALTLSADASAERERAHFFRGASRVLTDEYDGGLAELKALDRSKLPERDVPLLNATVQLALDVRKPFAGGSAAAADKPPATPARLDLASSTATLARAQKQLGELELLTKDRRP 392
[Close]
BLAST of mRNA_P-wetherbeei_contig57457.1.1 vs. uniprot
Match: A0A5H2YUU2_9BRAD (Chemotaxis protein n=20 Tax=Bradyrhizobium TaxID=374 RepID=A0A5H2YUU2_9BRAD)

HSP 1 Score: 253 bits (645), Expect = 1.150e-80
Identity = 139/167 (83.23%), Postives = 149/167 (89.22%), Query Frame = 1 
Query:    1 GLTQSSLALDERRFARIVTLLEQLDRASRLKLYFVIARNAMLRGRLAVALLAGERALVLSADASADRERAHFFRGTARVLTDEYDGGLAELKALDRSKLPERDIPLLNATAQLALDMRKPFAGKSAAAADEPAVTPARLDLASSTATLARARTQLGELERLTKGRRP 501
            GLTQSSLALD+RRFARI  LLEQ+DRASRLKLY VIAR AM+RG++AV  LAGERAL LSADASADRERAHFFRG AR LTDEYDGGLAELKALDRSKLPERD+PLLNAT QLALD+RKPF G SAAAAD+P  TPARLDLASST TLARA+ QLGELE LT+ RRP
Sbjct:  226 GLTQSSLALDDRRFARIAALLEQIDRASRLKLYLVIARAAMVRGQMAVTRLAGERALTLSADASADRERAHFFRGAARALTDEYDGGLAELKALDRSKLPERDVPLLNATVQLALDVRKPFPGGSAAAADKPPATPARLDLASSTVTLARAQKQLGELELLTRDRRP 392
[Close]
BLAST of mRNA_P-wetherbeei_contig57457.1.1 vs. uniprot
Match: I2QFT0_9BRAD (Uncharacterized protein n=21 Tax=Bradyrhizobium TaxID=374 RepID=I2QFT0_9BRAD)

HSP 1 Score: 253 bits (645), Expect = 1.450e-80
Identity = 141/167 (84.43%), Postives = 149/167 (89.22%), Query Frame = 1 
Query:    1 GLTQSSLALDERRFARIVTLLEQLDRASRLKLYFVIARNAMLRGRLAVALLAGERALVLSADASADRERAHFFRGTARVLTDEYDGGLAELKALDRSKLPERDIPLLNATAQLALDMRKPFAGKSAAAADEPAVTPARLDLASSTATLARARTQLGELERLTKGRRP 501
            GLTQSSLALDERRFARI TLLEQ+DRASRLKLY VIAR AM+RG LAV  LAGERAL LSADASA+RERAH FRG +R LTDEYDGG AELKALDRSKLPERDIP LNAT QLALD+RKPFAG SAAAAD+P VTPARLDLASSTATLARA+ QLGELE LT+ RRP
Sbjct:  234 GLTQSSLALDERRFARISTLLEQIDRASRLKLYLVIARTAMVRGGLAVTRLAGERALALSADASAERERAHLFRGVSRALTDEYDGGFAELKALDRSKLPERDIPFLNATVQLALDVRKPFAGGSAAAADKPPVTPARLDLASSTATLARAQKQLGELELLTRDRRP 400
[Close]
BLAST of mRNA_P-wetherbeei_contig57457.1.1 vs. uniprot
Match: A0A023XPH2_BRAJP (Putative chemotaxis protein n=17 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A023XPH2_BRAJP)

HSP 1 Score: 251 bits (641), Expect = 4.890e-80
Identity = 138/165 (83.64%), Postives = 148/165 (89.70%), Query Frame = 1 
Query:    1 GLTQSSLALDERRFARIVTLLEQLDRASRLKLYFVIARNAMLRGRLAVALLAGERALVLSADASADRERAHFFRGTARVLTDEYDGGLAELKALDRSKLPERDIPLLNATAQLALDMRKPFAGKSAAAADEPAVTPARLDLASSTATLARARTQLGELERLTKGR 495
            GLTQSS+ALDERRFARIVTLLEQ+DRASRLKLY VIAR AM+ GRLAV  LAGERAL LSADAS DRERAHF RG +R LTDEYDGG+AELKALDRSKLPERD+PLLNAT QLALD+RKPFAG S AAAD+P VTPARLDLA+ST TLARAR QLGELERLT+ R
Sbjct:  229 GLTQSSIALDERRFARIVTLLEQIDRASRLKLYLVIARTAMVHGRLAVTRLAGERALTLSADASEDRERAHFLRGVSRALTDEYDGGVAELKALDRSKLPERDVPLLNATLQLALDVRKPFAGGSTAAADKPPVTPARLDLAASTETLARARKQLGELERLTRDR 393
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57457.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001B8A57494.810e-9898.80chemotaxis protein n=2 Tax=Bradyrhizobium TaxID=37... [more]
A0A516IYE0_9BRAD4.970e-8890.42Chemotaxis protein n=1 Tax=Bradyrhizobium cosmicum... [more]
A0A5P6P9D7_9BRAD3.240e-8688.62Chemotaxis protein n=5 Tax=Bradyrhizobium TaxID=37... [more]
A0A1Q5SCM9_9BRAD1.370e-8285.03Chemotaxis protein n=2 Tax=unclassified Bradyrhizo... [more]
A0A1I3G7D6_9BRAD1.450e-8283.83Chemotaxis protein MotC n=18 Tax=Bradyrhizobium Ta... [more]
A0A0R3C1Z6_9BRAD1.720e-8285.63Chemotaxis protein n=22 Tax=Bradyrhizobiaceae TaxI... [more]
A0A844S2N7_9BRAD2.510e-8285.63Chemotaxis protein n=9 Tax=Bradyrhizobium TaxID=37... [more]
A0A5H2YUU2_9BRAD1.150e-8083.23Chemotaxis protein n=20 Tax=Bradyrhizobium TaxID=3... [more]
I2QFT0_9BRAD1.450e-8084.43Uncharacterized protein n=21 Tax=Bradyrhizobium Ta... [more]
A0A023XPH2_BRAJP4.890e-8083.64Putative chemotaxis protein n=17 Tax=Bradyrhizobia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57457contigP-wetherbeei_contig57457:3..506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog335659.S23_14120
Preferred namemotC
Model size504
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K10564
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0042597,GO:0044464
Exons1
Evalue1.35e-89
EggNOG OGs2CAJ4@1|root,2ZART@2|Bacteria,1MW6Q@1224|Proteobacteria,2U1UA@28211|Alphaproteobacteria,3JRMF@41294|Bradyrhizobiaceae
Descriptionin Rhizobium, interactions between MotB and MotC at the periplasmic surface of the motor control the energy flux or the energy coupling that drives flagellar rotation
Cds size504
COG categoryS
BRITEko00000,ko02035
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186852.1384358-CDS-P-wetherbeei_contig57457:2..5061683186852.1384358-CDS-P-wetherbeei_contig57457:2..506Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57457 3..506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57457.1.1prot_P-wetherbeei_contig57457.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57457 3..506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57457.1.1

>prot_P-wetherbeei_contig57457.1.1 ID=prot_P-wetherbeei_contig57457.1.1|Name=mRNA_P-wetherbeei_contig57457.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
GLTQSSLALDERRFARIVTLLEQLDRASRLKLYFVIARNAMLRGRLAVAL
LAGERALVLSADASADRERAHFFRGTARVLTDEYDGGLAELKALDRSKLP
ERDIPLLNATAQLALDMRKPFAGKSAAAADEPAVTPARLDLASSTATLAR
ARTQLGELERLTKGRRP*
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mRNA from alignment at P-wetherbeei_contig57457:3..506+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57457.1.1 ID=mRNA_P-wetherbeei_contig57457.1.1|Name=mRNA_P-wetherbeei_contig57457.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig57457:3..506+ (Phaeothamnion wetherbeei SAG_119_79)
GGCCTGACGCAATCGAGCCTTGCGCTTGACGAGCGCCGCTTTGCGCGAAT
CGTGACCCTGCTGGAACAGCTCGACCGCGCGAGCCGCCTCAAGCTTTACT
TTGTGATCGCGCGCAATGCGATGTTGCGGGGACGGCTGGCGGTGGCCCTG
CTTGCCGGCGAGCGCGCCCTGGTGCTCAGCGCCGACGCCTCCGCGGATCG
CGAGCGTGCGCATTTCTTCCGCGGCACCGCGCGGGTATTAACCGACGAGT
ACGACGGCGGCCTTGCCGAGCTGAAGGCACTCGACCGGTCGAAACTTCCC
GAGCGCGACATTCCCCTGTTGAATGCGACGGCCCAGCTTGCGCTCGACAT
GCGCAAACCGTTTGCGGGTAAATCCGCCGCCGCAGCCGACGAGCCTGCGG
TCACGCCGGCGCGTCTCGATCTCGCGTCGTCGACTGCGACACTCGCCCGC
GCGCGGACGCAGCTCGGTGAACTCGAACGCCTCACCAAGGGTCGCCGCCC
ATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57457:3..506+

>mRNA_P-wetherbeei_contig57457.1.1 ID=mRNA_P-wetherbeei_contig57457.1.1|Name=mRNA_P-wetherbeei_contig57457.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig57457:3..506+ (Phaeothamnion wetherbeei SAG_119_79)
GGCCTGACGCAATCGAGCCTTGCGCTTGACGAGCGCCGCTTTGCGCGAAT
CGTGACCCTGCTGGAACAGCTCGACCGCGCGAGCCGCCTCAAGCTTTACT
TTGTGATCGCGCGCAATGCGATGTTGCGGGGACGGCTGGCGGTGGCCCTG
CTTGCCGGCGAGCGCGCCCTGGTGCTCAGCGCCGACGCCTCCGCGGATCG
CGAGCGTGCGCATTTCTTCCGCGGCACCGCGCGGGTATTAACCGACGAGT
ACGACGGCGGCCTTGCCGAGCTGAAGGCACTCGACCGGTCGAAACTTCCC
GAGCGCGACATTCCCCTGTTGAATGCGACGGCCCAGCTTGCGCTCGACAT
GCGCAAACCGTTTGCGGGTAAATCCGCCGCCGCAGCCGACGAGCCTGCGG
TCACGCCGGCGCGTCTCGATCTCGCGTCGTCGACTGCGACACTCGCCCGC
GCGCGGACGCAGCTCGGTGAACTCGAACGCCTCACCAAGGGTCGCCGCCC
ATGA
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