mRNA_P-wetherbeei_contig5742.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5742.2.1
Unique NamemRNA_P-wetherbeei_contig5742.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5742.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5742contigP-wetherbeei_contig5742:1230..1648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size419
Hectar predicted targeting categorymitochondrion
Exons1
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186851.7982678-CDS-P-wetherbeei_contig5742:1229..16311683186851.7982678-CDS-P-wetherbeei_contig5742:1229..1631Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5742 1230..1631 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186851.8089516-UTR-P-wetherbeei_contig5742:1631..16481683186851.8089516-UTR-P-wetherbeei_contig5742:1631..1648Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5742 1632..1648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5742.2.1prot_P-wetherbeei_contig5742.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5742 1230..1631 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5742.2.1

>prot_P-wetherbeei_contig5742.2.1 ID=prot_P-wetherbeei_contig5742.2.1|Name=mRNA_P-wetherbeei_contig5742.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
MIQAAARGRLARTAAAAARRSAKDRQEKEAFERYKGEKFERLSVGELLAS
GGGHGGRGAAVAAAANGNESMRSPPAHRARRDHRIGDCGDGGGGAAAASE
QHHSCSPVGNRRQWSPSRSPRPAPLPLSAVEGSP
back to top

mRNA from alignment at P-wetherbeei_contig5742:1230..1648-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5742.2.1 ID=mRNA_P-wetherbeei_contig5742.2.1|Name=mRNA_P-wetherbeei_contig5742.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=419bp|location=Sequence derived from alignment at P-wetherbeei_contig5742:1230..1648- (Phaeothamnion wetherbeei SAG_119_79)
CGGCCGCGGCGGCCACGATGATTCAGGCGGCTGCACGCGGCAGGCTGGCC
CGGACGGCGGCAGCCGCCGCTCGTCGATCGGCCAAGGACAGGCAAGAGAA
AGAGGCGTTCGAGCGGTATAAGGGGGAGAAGTTTGAGCGACTCAGCGTCG
GCGAGCTGCTGGCAAGCGGCGGCGGCCATGGCGGCAGAGGTGCTGCCGTG
GCTGCAGCAGCGAACGGAAATGAGTCAATGCGATCGCCGCCGGCACATCG
CGCGCGCCGCGACCACAGGATCGGCGACTGTGGCGACGGTGGCGGTGGAG
CGGCGGCGGCATCGGAGCAGCATCATTCTTGCTCACCAGTCGGCAACCGC
CGCCAATGGAGCCCAAGCCGGTCACCGCGCCCGGCGCCGCTGCCGCTCTC
CGCAGTCGAGGGGAGTCCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5742:1230..1648-

>mRNA_P-wetherbeei_contig5742.2.1 ID=mRNA_P-wetherbeei_contig5742.2.1|Name=mRNA_P-wetherbeei_contig5742.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig5742:1230..1648- (Phaeothamnion wetherbeei SAG_119_79)
ATGATTCAGGCGGCTGCACGCGGCAGGCTGGCCCGGACGGCGGCAGCCGC
CGCTCGTCGATCGGCCAAGGACAGGCAAGAGAAAGAGGCGTTCGAGCGGT
ATAAGGGGGAGAAGTTTGAGCGACTCAGCGTCGGCGAGCTGCTGGCAAGC
GGCGGCGGCCATGGCGGCAGAGGTGCTGCCGTGGCTGCAGCAGCGAACGG
AAATGAGTCAATGCGATCGCCGCCGGCACATCGCGCGCGCCGCGACCACA
GGATCGGCGACTGTGGCGACGGTGGCGGTGGAGCGGCGGCGGCATCGGAG
CAGCATCATTCTTGCTCACCAGTCGGCAACCGCCGCCAATGGAGCCCAAG
CCGGTCACCGCGCCCGGCGCCGCTGCCGCTCTCCGCAGTCGAGGGGAGTC
CC
back to top