mRNA_P-wetherbeei_contig5739.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5739.1.2
Unique NamemRNA_P-wetherbeei_contig5739.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5739.1.2 vs. uniprot
Match: A0A7S2R6S9_9STRA (Rhomboid-like protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R6S9_9STRA)

HSP 1 Score: 220 bits (560), Expect = 7.500e-64
Identity = 120/240 (50.00%), Postives = 154/240 (64.17%), Query Frame = 1
Query:    1 GLAPREINPMLGPWPTTLVAFGAKDTALILYDNEWWRLLTPAMLHAGFIHLFVNIVIQMRLGVHLEYEWGWRPWMAVYVASAAFSSLMSCIFLPDQLGVGSSGAIMGLMGAWFVEIVCKWSTADEEAHEQLHQVSAECSNGCFTNFLMATLNIGVTLGFSFVPYVDWAAHVGGLVAGGAVGLWLFGG---SLAWERGRRYAKPACAGMLLLATAAALGWLLMYGAPDPSLRDVCAMFAEY 711
            GLAP E NPM+GP+ T L   GAK+ ALI Y N+WWRL TP +LHAGFIHL VN++IQ+R+GV LEY+WG   +  +Y+ S   S+++SCI LPD LGVGSSGAIMG++GAW  EIVC WS+  EE   +L Q SA        N ++  LNI +TL FS VP VDWAAH+GGL+AG  +G+ LFG    S  W  G R       G+++   A   G + +    DPS RD+  +  EY
Sbjct:  191 GLAPTEQNPMVGPYATILDRLGAKNAALIAYRNQWWRLFTPMLLHAGFIHLAVNVLIQVRIGVILEYQWGIAIYTIIYITSGFLSAILSCIALPDSLGVGSSGAIMGILGAWLAEIVCAWSSTPEE---ELGQRSA--------NLVLVFLNILITLSFSLVPLVDWAAHIGGLLAGWMMGVVLFGHKFQSPIWRHGSRIV--CLTGLVVFCVA---GMVTIATTLDPS-RDLLHVCREY 413          
BLAST of mRNA_P-wetherbeei_contig5739.1.2 vs. uniprot
Match: A0A7S2UT15_9STRA (Rhomboid-like protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT15_9STRA)

HSP 1 Score: 179 bits (454), Expect = 3.910e-50
Identity = 91/187 (48.66%), Postives = 120/187 (64.17%), Query Frame = 1
Query:    1 GLAPREINPMLGPWPTTLVAFGAKDTALILYDNEWWRLLTPAMLHAGFIHLFVNIVIQMRLGVHLEYEWGWRPWMAVYVASAAFSSLMSCIFLPDQLGVGSSGAIMGLMGAWFVEIVCKWSTAD-EEAHEQLHQVSAECSNGCFTNFLMATLNIGVTLGFSFVPYVDWAAHVGGLVAGGAVGLWLFG 558
            GLAP  +NPM+GPWPT LV +GAK TA I+Y  E+WRL++P MLHAGFIH   N  IQ+R+GV LE EWG   W  +Y+ S    S+ SC+   + +GVGSSGA+MGL+GAW V ++ K      +E  E+ +Q+             +  + I   L  SFVPYVDWAAH+ GL+AG A+GL+ FG
Sbjct:   60 GLAPIWLNPMIGPWPTALVHYGAKLTARIVYRGEYWRLMSPIMLHAGFIHYACNAYIQLRIGVQLELEWGPTRWFLIYLLSGMTGSIYSCLAHENVVGVGSSGALMGLLGAWVVHLMAKCGEGTPQEQKERNNQLR------------VLLMQIAFVLLLSFVPYVDWAAHLMGLLAGFALGLFFFG 234          
BLAST of mRNA_P-wetherbeei_contig5739.1.2 vs. uniprot
Match: A0A1Z5KL25_FISSO (Rhomboid-like protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KL25_FISSO)

HSP 1 Score: 181 bits (459), Expect = 1.300e-49
Identity = 88/186 (47.31%), Postives = 120/186 (64.52%), Query Frame = 1
Query:    1 GLAPREINPMLGPWPTTLVAFGAKDTALILYDNEWWRLLTPAMLHAGFIHLFVNIVIQMRLGVHLEYEWGWRPWMAVYVASAAFSSLMSCIFLPDQLGVGSSGAIMGLMGAWFVEIVCKWSTADEEAHEQL-HQVSAECSNGCFTNFLMATLNIGVTLGFSFVPYVDWAAHVGGLVAGGAVGLWLF 555
            G+AP ++NPMLGP+P  L  +G K+  LI+ D EWWRL+TP +LHAG  HL  N+ +Q+ +G+  E EWG   W+ +Y+ S A SS+MS I++P  + VGSSGA+MGL GA   EIV +    D+    ++ H+V  E            T ++ V L FSFVPYVDWAAHVGGL+AG A+G  +F
Sbjct:  111 GVAPIQLNPMLGPYPDALSEWGGKNAPLIVEDGEWWRLITPILLHAGLFHLVGNVAVQLEMGILFEKEWGTIRWLIIYIGSGAGSSIMSVIYMPQAVSVGSSGAVMGLFGAKLAEIVLRVCERDDTVQSRVAHKVRKE-------QCCAVTCSVIVVLLFSFVPYVDWAAHVGGLLAGLALGFMIF 289          
BLAST of mRNA_P-wetherbeei_contig5739.1.2 vs. uniprot
Match: A0A6T6G4P5_9STRA (Rhomboid-like protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A6T6G4P5_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.260e-48
Identity = 98/243 (40.33%), Postives = 134/243 (55.14%), Query Frame = 1
Query:    1 GLAPREINPMLGPWPTTLVAFGAKDTALILYDNEWWRLLTPAMLHAGFIHLFVNIVIQMRLGVHLEYEWGWRPWMAVYVASAAFSSLMSCIFLPDQLGVGSSGAIMGLMGAWFVEIVCKWSTADEEAHEQL-HQVSAECSNGCFTNFLMATLNIGVTLGFSFVPYVDWAAHVGGLVAGGAVGLWLFG---GSLAWERGRRYAKPACAGMLLLATAAALGWLLMYGAP---DPSLRDVCAMFAE 708
            G+AP  INPM GP+P  L  +G K+   IL ++EWWRL+TP MLHAG IHL  NI +Q+  G   E EWG   W+ +Y+ SA  SS++S I +PD + VGSSGA+MGL G    E++C+   +D+    ++ HQV  E   G        T ++ V + FSF+PYVDWAAH+GGL+AG  VG+ +F     +L W         A  G+        +    MY         L DVC  + E
Sbjct:  203 GVAPININPMFGPYPDALSEWGGKNAFNILEEHEWWRLITPIMLHAGVIHLLCNIAVQLETGAFFEREWGSTNWLIIYLTSALGSSVLSVIAMPDAISVGSSGAVMGLFGGKLAEVICRCCESDKTEQGRIGHQVRKEQCAG-------VTCSVVVVMLFSFIPYVDWAAHLGGLLAGLVVGVMVFSLKIKTLTWRLAWFIVGTALTGLFF-----GISLFAMYNGDIDVADELEDVCGYYKE 433          
BLAST of mRNA_P-wetherbeei_contig5739.1.2 vs. uniprot
Match: A0A7S2IBS3_9DINO (Rhomboid-like protease (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2IBS3_9DINO)

HSP 1 Score: 171 bits (433), Expect = 6.140e-48
Identity = 90/190 (47.37%), Postives = 118/190 (62.11%), Query Frame = 1
Query:    1 GLAPREINPMLGPWPTTLVAFGAKDTALILYDNEWWRLLTPAMLHAGFIHLFVNIVIQMRLGVHLEYEWGWRPWMAVYVASAAFSSLMSCIFLPDQLGVGSSGAIMGLMGAWFVEIVCKWS-TADEEAHEQLHQVSAECSNGCFTNFLMATLNIGVTLGFSFVPYVDWAAHVGGLVAGGAVGLWLFGGSL 567
            GLA  E N  +GP P  L AFGAK+ A IL  +EWWRL TP +LHAG +HL  N+++Q+R GV LE  WG   W+A+Y+AS  ++SL SC+ LP +LGVGSSGA+ GL GAWF   +  W+ T   +  ++  QV A         F +A + +      SF P VD+AAH+GGL AGG V + LF G L
Sbjct:    9 GLASAEENAFIGPHPHVLDAFGAKNAARILERDEWWRLATPMVLHAGVLHLCGNLLMQLRTGVMLELLWGHSAWLAIYIASGVYASLASCVVLPGRLGVGSSGALCGLFGAWFAFTLITWNQTLPLDVRDRNQQVMA-------IGFCIALIAL-----LSFTPLVDFAAHLGGLAAGGTVAMVLFAGRL 186          
BLAST of mRNA_P-wetherbeei_contig5739.1.2 vs. uniprot
Match: A0A448ZR26_9STRA (Rhomboid domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZR26_9STRA)

HSP 1 Score: 184 bits (468), Expect = 1.260e-47
Identity = 102/240 (42.50%), Postives = 140/240 (58.33%), Query Frame = 1
Query:    1 GLAPREINPMLGPWPTTLVAFGAKDTALILYDNEWWRLLTPAMLHAGFIHLFVNIVIQMRLGVHLEYEWGWRPWMAVYVASAAFSSLMSCIFLPDQLGVGSSGAIMGLMGAWFVEIVCKWSTADEEAHEQL-HQVSAECSNGCFTNFLMATLNIGVTLGFSFVPYVDWAAHVGGLVAGGAVGLWLFGGSLAWERGRRYAKPACAGMLLLATAAALGWLLMYGAPDPS---LRDVCAMFAE 708
            G+AP  INPM+GP+P  L  +GAK+T LIL D+EWWRLLTP +LHAG IHL  N+++Q+  G   E EWG   W+ +Y+ SA  SS +S + +PD + VGSSGA+MGL G    E++C+    +    +++ HQV  E   G   +     L       FSF+PYVDWAAH+GGLVAG  VG+ LF  +L   R  +       G+ +  T  A+ +  MY     +   LRDVC  + E
Sbjct:  103 GVAPMNINPMIGPYPDALSEWGAKNTVLILEDDEWWRLLTPILLHAGVIHLACNLMVQIDTGAFFEREWGSVNWLIIYLVSAVGSSALSVVAMPDAISVGSSGAVMGLFGGKGAEVICRCCEKESTDQDRIAHQVRKEQCAGVMCSVTXVML-------FSFIPYVDWAAHLGGLVAGFCVGMILFSANLKKARCSKLFWLLI-GVGITITYFAVVFERMYSGEIETAEELRDVCKYYRE 334          
BLAST of mRNA_P-wetherbeei_contig5739.1.2 vs. uniprot
Match: A0A7S2LY64_9STRA (Rhomboid-like protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LY64_9STRA)

HSP 1 Score: 175 bits (443), Expect = 3.800e-47
Identity = 104/245 (42.45%), Postives = 144/245 (58.78%), Query Frame = 1
Query:    1 GLAPREINPMLGPWPTTLVAFGAKDTALILYDNEWWRLLTPAMLHAGFIHLFVNIVIQMRLGVHLEYEWGWRPWMAVYVASAAFSSLMSCIFLPDQLGVGSSGAIMGLMGAWFVEIVC----KWSTADEEAHEQLHQVSAECSNGCFTNFLMATLNIGVTLGFSFVPYVDWAAHVGGLVAGGAVGLWLFGGSLAWERGRRY----AKPACAGMLLLATAAALGWLLMYGAPDPSLRDVCAMFAEY 711
            G+AP EINPM+GP+P  L  +GAK+  LI+ D E +RL+TP  LHAG IHL  N+++QM  G   E EWG   W+ VY+ SA  SS++S I +PDQ+ VGSSG+IMGL GA F EI+     K +T  E A EQ  +  A     C   F      I + +  SF+PYVDWAAH+GGLVAG A+G+  F  ++  + G  +       +C   +L +T  A+   +     D  +RDVCA + ++
Sbjct:  108 GVAPLEINPMIGPYPDALNYWGAKNAVLIIDDGELYRLITPIFLHAGLIHLAGNVLVQMDSGNRWEKEWGSLIWIIVYIGSAIGSSVLSVIAMPDQISVGSSGSIMGLFGAKFAEIIVLMCEKGTTVRELAAEQSRKEQA-----CHVIF-----GIIIVMAMSFIPYVDWAAHLGGLVAGFAIGIVCFSFTMRNKFGTVFWLGVGVASC--FVLYSTFIAI---MFTTETDDEMRDVCAYYQQF 337          
BLAST of mRNA_P-wetherbeei_contig5739.1.2 vs. uniprot
Match: A0A6U0S1P1_9STRA (Rhomboid-like protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0S1P1_9STRA)

HSP 1 Score: 174 bits (440), Expect = 4.430e-47
Identity = 100/243 (41.15%), Postives = 138/243 (56.79%), Query Frame = 1
Query:    1 GLAPREINPMLGPWPTTLVAFGAKDTALILYDNEWWRLLTPAMLHAGFIHLFVNIVIQMRLGVHLEYEWGWRPWMAVYVASAAFSSLMSCIFLPDQLGVGSSGAIMGLMGAWFVEIVCKWSTADEEAHEQL-HQVSAECSNGCFTNFLMATLNIGVTLGFSFVPYVDWAAHVGGLVAGGAVGLWLFGGSLAWERGRRYAKPACAGMLLLATAAALGWL---LMYGAPDP--SLRDVCAMFAEY 711
            G+AP  INPM+GP+P  +  +GAK+   IL D E WRLLTP +LHAG +HL  N+ +Q  LGV  E EWG   W+ VY+ S   SS++S   +PD + VGSSGAIMGL GA   EI  KW    E   E++ H V  E          M +  + + +  SF+PYVDWAAH+GGL++G AVG+ +F    + E+  R+ +     ++ +       W    LMY   +P   L DVCA + +Y
Sbjct:   90 GIAPLNINPMIGPYPDVMSYWGAKNALKILDDGENWRLLTPVLLHAGILHLIGNVHVQWDLGVFFEKEWGSAAWLIVYLTSGVGSSILSVYCMPDNISVGSSGAIMGLFGAKLSEIFVKWYEPRETILEKVGHAVRKE-------QLCMVSGGVVLVMLLSFIPYVDWAAHLGGLLSGIAVGMVVF----SIEKRNRFWRSVWL-LVGIGLTTLYFWKTIQLMYSGVEPMQDLEDVCAYYQQY 320          
BLAST of mRNA_P-wetherbeei_contig5739.1.2 vs. uniprot
Match: A0A7S3VDY5_9STRA (Rhomboid-like protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VDY5_9STRA)

HSP 1 Score: 175 bits (444), Expect = 2.890e-46
Identity = 100/241 (41.49%), Postives = 138/241 (57.26%), Query Frame = 1
Query:    1 GLAPREINPMLGPWPTTLVAFGAKDTALILYDNEWWRLLTPAMLHAGFIHLFVNIVIQMRLGVHLEYEWGWRPWMAVYVASAAFSSLMSCIFLPDQLGVGSSGAIMGLMGAWFVEIVCKWSTADEEAHEQL-HQVSAECSNGCFTNFLMATLNIGVTLGFSFVPYVDWAAHVGGLVAGGAVGLWLFGGSLAWERGRRYAKP-ACAGML--LLATAAALGWLLMYGAPDPSLRDVCAMFAEY 711
            GLAP  +NPM+GP P  L  +G K+ A IL DNE+WRL+TP MLHAG IHLF NI +Q+ +G   E EWG   W+ +Y+ SA  SS+ S  F PD + VGSSGA+MGL G    EI C+   + +    ++ H V  E  +G       +  ++ V + FSFVPYVDWAAH+GGLVAG A     F   +   + + +A    C G+   L+     + ++L    P   L+DVC  + +Y
Sbjct:  248 GLAPFNMNPMIGPPPDALDYWGGKNAAKILDDNEYWRLVTPIMLHAGIIHLFCNISVQVDIGAFFEREWGSPIWLFIYLTSAVGSSIFSVCFKPDSVSVGSSGAVMGLFGGKLGEIFCRARESRKSPQGRIGHAVRMEQLSG-------SLCSVAVVMAFSFVPYVDWAAHLGGLVAGFAAAFLCFAPKI---KSKGFAVFWFCTGLAINLVMYITLIDYMLNKVEPMDDLKDVCNYYKQY 478          
BLAST of mRNA_P-wetherbeei_contig5739.1.2 vs. uniprot
Match: A0A7S0C3J6_9STRA (Rhomboid-like protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C3J6_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.690e-45
Identity = 90/237 (37.97%), Postives = 138/237 (58.23%), Query Frame = 1
Query:    1 GLAPREINPMLGPWPTTLVAFGAKDTALILYDNEWWRLLTPAMLHAGFIHLFVNIVIQMRLGVHLEYEWGWRPWMAVYVASAAFSSLMSCIFLPDQLGVGSSGAIMGLMGAWFVEIVCKWSTADEEAHEQLHQVSAECSNGCFTNFLMATLNIGVTLGFSFVPYVDWAAHVGGLVAGGAVGLWLFGGSLAWERGRRYAKPACAG---MLLLATAAALGWLLMYGAPDPSLRDVCAMF 702
            G+AP  +NPM+GP+P  L  +G K+  L++ + E+WRLL+P +LH+G +HL  N+ IQ+  G   E EWG + W+ VY++SA   +L+SC+  PD + VGSSGA+MGL GA   E+ C+      E +   H    E  +G F +  + +L       F+F+P+VDW++H+GGL+ G +VGL LF   L  +    +     AG    L+ + AAA+    +  +P   LRDVC  +
Sbjct:   90 GVAPISVNPMVGPYPDALSYWGGKNAYLVVNEYEYWRLLSPVVLHSGVLHLLGNVAIQLETGAFFEREWGSQIWLVVYLSSAMGGTLLSCVAEPDSVSVGSSGAVMGLFGAKIAEVFCRSCQVGTENNSLKHNTHIEQLSGIFCSGTIVSL-------FTFIPFVDWSSHLGGLMTGFSVGLLLFAFQLKNQINFAFWGLLGAGAVAFLVFSFAAAI----VNVSPPEGLRDVCDFY 315          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5739.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2R6S9_9STRA7.500e-6450.00Rhomboid-like protein n=1 Tax=Rhizochromulina mari... [more]
A0A7S2UT15_9STRA3.910e-5048.66Rhomboid-like protein (Fragment) n=1 Tax=Fibrocaps... [more]
A0A1Z5KL25_FISSO1.300e-4947.31Rhomboid-like protein n=2 Tax=Fistulifera solaris ... [more]
A0A6T6G4P5_9STRA1.260e-4840.33Rhomboid-like protein n=1 Tax=Craspedostauros aust... [more]
A0A7S2IBS3_9DINO6.140e-4847.37Rhomboid-like protease (Fragment) n=1 Tax=Brandtod... [more]
A0A448ZR26_9STRA1.260e-4742.50Rhomboid domain-containing protein n=1 Tax=Pseudo-... [more]
A0A7S2LY64_9STRA3.800e-4742.45Rhomboid-like protein n=1 Tax=Skeletonema marinoi ... [more]
A0A6U0S1P1_9STRA4.430e-4741.15Rhomboid-like protein n=1 Tax=Eucampia antarctica ... [more]
A0A7S3VDY5_9STRA2.890e-4641.49Rhomboid-like protein n=1 Tax=Chaetoceros debilis ... [more]
A0A7S0C3J6_9STRA1.690e-4537.97Rhomboid-like protein n=1 Tax=Proboscia inermis Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5739contigP-wetherbeei_contig5739:9..1932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0TPZ4
PFAMsRhomboid
Model size1250
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons4
Evalue4.48e-40
EggNOG OGsCOG0705@1|root,KOG2289@2759|Eukaryota,2XG5Q@2836|Bacillariophyta
DescriptionRhomboid-like protein
Cds size717
COG categoryT
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5739.1.2prot_P-wetherbeei_contig5739.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5739 36..1426 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186851.244034-UTR-P-wetherbeei_contig5739:8..351683186851.244034-UTR-P-wetherbeei_contig5739:8..35Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5739 9..35 +
1683186851.2997353-UTR-P-wetherbeei_contig5739:1426..19321683186851.2997353-UTR-P-wetherbeei_contig5739:1426..1932Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5739 1427..1932 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186851.253621-CDS-P-wetherbeei_contig5739:35..1841683186851.253621-CDS-P-wetherbeei_contig5739:35..184Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5739 36..184 +
1683186851.271021-CDS-P-wetherbeei_contig5739:339..4931683186851.271021-CDS-P-wetherbeei_contig5739:339..493Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5739 340..493 +
1683186851.2814565-CDS-P-wetherbeei_contig5739:890..9921683186851.2814565-CDS-P-wetherbeei_contig5739:890..992Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5739 891..992 +
1683186851.2901857-CDS-P-wetherbeei_contig5739:1114..14261683186851.2901857-CDS-P-wetherbeei_contig5739:1114..1426Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5739 1115..1426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5739.1.2

>prot_P-wetherbeei_contig5739.1.2 ID=prot_P-wetherbeei_contig5739.1.2|Name=mRNA_P-wetherbeei_contig5739.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=239bp
MLGPWPTTLVAFGAKDTALILYDNEWWRLLTPAMLHAGFIHLFVNIVIQM
RLGVHLEYEWGWRPWMAVYVASAAFSSLMSCIFLPDQLGVGSSGAIMGLM
GAWFVEIVCKWSTADEEAHEQLHQVSAECSNGCFTNFLMATLNIGVTLGF
SFVPYVDWAAHVGGLVAGGAVGLWLFGGSLAWERGRRYAKPACAGMLLLA
TAAALGWLLMYGAPDPSLRDVCAMFAEYEARGVRLPAC*
back to top

mRNA from alignment at P-wetherbeei_contig5739:9..1932+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5739.1.2 ID=mRNA_P-wetherbeei_contig5739.1.2|Name=mRNA_P-wetherbeei_contig5739.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1924bp|location=Sequence derived from alignment at P-wetherbeei_contig5739:9..1932+ (Phaeothamnion wetherbeei SAG_119_79)
GGCCTGGCGCCCCGCGAGATCAATCCCATGCTCGGGCCCTGGCCCACCAC TCTCGTGGCGTTCGGCGCCAAGGACACGGCGTTGATTCTCTACGACAACG AATGGTGGCGGCTGCTGACGCCGGCAATGCTGCACGCCGGCTTCATCCAC CTGTTCGTCAACATCGTCATTCAGATGTGAGACAGACGGCAAGACTTAGG AGGCGCGGAAATTGAAAACGGCATTAGGAAGACAGTGATCTGCCACCACC ACATCGTTCCTGTTAAACTAATCGTTCCCCGGATTATAACCCTTAAATAC CGCTCCTCCTCGCCGATGCGCTCTCCGCCAGGCGGCTGGGCGTGCATTTG GAATACGAGTGGGGCTGGCGGCCGTGGATGGCTGTCTACGTGGCGTCTGC GGCCTTCAGCAGCCTGATGAGCTGCATCTTCCTGCCCGACCAGCTGGGGG TCGGCAGCAGCGGCGCCATCATGGGGCTCATGGGGGTGAGTGCAGGGAAG GAGAACCGGGCGGGACGTTGTTGGTTTATGTTCTTTGTCGCCACATTTGC TGCCTGTCTGGGTTGTTTTTTGAAGAAGAGCAAGCAGCAGAGAGCAACGA TGTAGCTGCTCTTTCCCCGTGGCTGCGGCTTCTGGGACCCGTCCGAAGCG GCCCATGGCAGCCGAACCGACCAACCCAACCTTGCCGTATCTCGGCTTCT CTAGCATGCTTCCGACGCCCGCTCCGTCAATTTACCGCCTCCAAGCGCTA TGATGCCTCCTTCCCCGATCCTGCCGTTCCATATCCTGCACTTCCGCACG TATCTGTAACACGTGGCATCAATGGCAACCCGCTGGCCCCTCTCGAACCC GCTCTTGCCCGGCACCGGCGCCGTGCCCGCAGGCGTGGTTCGTGGAGATC GTCTGCAAGTGGTCGACGGCGGACGAGGAGGCCCACGAGCAGCTGCACCA AGTAAGCGCAGAATGTTCTAATGGCTGTTTTACAGTTCTTGACAGGTGCC GAAACGGAAGCTGAGACGTGGTAACAGTTCAGTTCCCCCCAGTCTCATCA TTTACTAACCAAAACCATTTCCCGCCCCTTGTTTGCCCCTATTTCTCAAC AACCAGAACTTTTTGATGGCGACGCTAAACATCGGTGTGACGCTCGGCTT CTCATTCGTGCCGTACGTCGACTGGGCGGCGCACGTCGGCGGCCTCGTCG CTGGCGGCGCCGTCGGACTGTGGCTTTTCGGCGGCAGCCTGGCGTGGGAG CGGGGGCGGCGGTACGCCAAGCCGGCCTGCGCCGGCATGCTGCTGCTGGC GACAGCGGCTGCGCTGGGTTGGCTGCTGATGTACGGGGCGCCGGACCCGA GCCTGAGGGACGTGTGCGCGATGTTCGCCGAGTACGAGGCGCGCGGCGTC AGGCTACCGGCCTGCTGAAACCCGCCGGGAGTGCGCTGGGTGGGACGGCA GGCGACAGCGCCTGGCTGAGATGTGGCTGAGTGTGGCTGCAGGTGTTTCG AAGTTAATATAGTGAAGGCCGATTCCGGACGGCCGAGGGCGTAGTTTTTC GGCGAGGTGGGCAGCGTACCGTGGTTACAGTGCTTCGAAGGCGCGGCAGT GGGTAGGCAGGACGCGATGTTGGGCAGTTCGAAGCCGTTTTGGTCCAAAA GAGAAAGATTATATTATCGATATCTGGTGCCTGGCGGCCCAACGACAAGG AAGGAGATTGTTGGGTAGGACGACGTGTGGGTAGGCAGGGTGGACAACGG TGCCATGCATAGACAACCAGCCAAGCGGCTGTGTTGGCTTACCCGCTATC GTGCATGGTATCTACACAGAGAGAGGGGCACATCACCGAAGCTAGCTGTG TGTGAAGCTTTTTTAAAAGGATGAAAGAAAGGCAACGCCCCCGCGCGTCC AGCACATCATGCGACTGACTGGAT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5739:9..1932+

>mRNA_P-wetherbeei_contig5739.1.2 ID=mRNA_P-wetherbeei_contig5739.1.2|Name=mRNA_P-wetherbeei_contig5739.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=717bp|location=Sequence derived from alignment at P-wetherbeei_contig5739:9..1932+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGGGCCCTGGCCCACCACTCTCGTGGCGTTCGGCGCCAAGGACAC
GGCGTTGATTCTCTACGACAACGAATGGTGGCGGCTGCTGACGCCGGCAA
TGCTGCACGCCGGCTTCATCCACCTGTTCGTCAACATCGTCATTCAGATG
CGGCTGGGCGTGCATTTGGAATACGAGTGGGGCTGGCGGCCGTGGATGGC
TGTCTACGTGGCGTCTGCGGCCTTCAGCAGCCTGATGAGCTGCATCTTCC
TGCCCGACCAGCTGGGGGTCGGCAGCAGCGGCGCCATCATGGGGCTCATG
GGGGCGTGGTTCGTGGAGATCGTCTGCAAGTGGTCGACGGCGGACGAGGA
GGCCCACGAGCAGCTGCACCAAGTAAGCGCAGAATGTTCTAATGGCTGTT
TTACAAACTTTTTGATGGCGACGCTAAACATCGGTGTGACGCTCGGCTTC
TCATTCGTGCCGTACGTCGACTGGGCGGCGCACGTCGGCGGCCTCGTCGC
TGGCGGCGCCGTCGGACTGTGGCTTTTCGGCGGCAGCCTGGCGTGGGAGC
GGGGGCGGCGGTACGCCAAGCCGGCCTGCGCCGGCATGCTGCTGCTGGCG
ACAGCGGCTGCGCTGGGTTGGCTGCTGATGTACGGGGCGCCGGACCCGAG
CCTGAGGGACGTGTGCGCGATGTTCGCCGAGTACGAGGCGCGCGGCGTCA
GGCTACCGGCCTGCTGA
back to top