mRNA_P-wetherbeei_contig57383.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57383.1.1
Unique NamemRNA_P-wetherbeei_contig57383.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57383.1.1 vs. uniprot
Match: A0A7V8VXV4_9CHLR (Response regulator transcription factor n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8VXV4_9CHLR)

HSP 1 Score: 103 bits (258), Expect = 1.220e-27
Identity = 53/67 (79.10%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:    1 LDGVLVPREREVLGLVAAGLPNKAIAHELGISDHTVKFHVSSLLTKLGAASRTEAVTVATRMGVLSL 201
            ++  L PREREVLGLVA GLPNK+IA  LGISDHTVKFHVSS+LTKL A SRTEAVT ATRMG+LSL
Sbjct:   23 IESSLSPREREVLGLVATGLPNKSIARSLGISDHTVKFHVSSVLTKLDAGSRTEAVTTATRMGILSL 89
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BLAST of mRNA_P-wetherbeei_contig57383.1.1 vs. uniprot
Match: A0A7W0PRY0_9CHLR (Response regulator transcription factor n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0PRY0_9CHLR)

HSP 1 Score: 103 bits (257), Expect = 1.240e-25
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:   13 LVPREREVLGLVAAGLPNKAIAHELGISDHTVKFHVSSLLTKLGAASRTEAVTVATRMGVLSL 201
            L PREREVLGLVA+GLPNKAIA  LGISDHTVKFHVSS+LTKL A SRTEAVT+ATR G+LSL
Sbjct:  194 LSPREREVLGLVASGLPNKAIARSLGISDHTVKFHVSSVLTKLDAGSRTEAVTIATRQGILSL 256
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BLAST of mRNA_P-wetherbeei_contig57383.1.1 vs. uniprot
Match: A0A7W0AAB1_9CHLR (Response regulator transcription factor n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0AAB1_9CHLR)

HSP 1 Score: 101 bits (251), Expect = 9.710e-25
Identity = 53/63 (84.13%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:   13 LVPREREVLGLVAAGLPNKAIAHELGISDHTVKFHVSSLLTKLGAASRTEAVTVATRMGVLSL 201
            L PREREVL LVAAGLPNKAIA  LGISDHTVKFHVSS+LTKL A SRTEAVT+ATR G+LSL
Sbjct:  194 LSPREREVLELVAAGLPNKAIARALGISDHTVKFHVSSVLTKLDAGSRTEAVTIATRQGILSL 256
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BLAST of mRNA_P-wetherbeei_contig57383.1.1 vs. uniprot
Match: A0A7W0KF84_9CHLR (Response regulator transcription factor n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0KF84_9CHLR)

HSP 1 Score: 100 bits (249), Expect = 1.930e-24
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:   13 LVPREREVLGLVAAGLPNKAIAHELGISDHTVKFHVSSLLTKLGAASRTEAVTVATRMGVLSL 201
            L PREREVL LVA+G+PNKAIA  LGISDHTVKFHVSS+LTKL A SRTEAVT+ATR G+LSL
Sbjct:  194 LSPREREVLALVASGMPNKAIARSLGISDHTVKFHVSSVLTKLDAGSRTEAVTIATRQGILSL 256
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BLAST of mRNA_P-wetherbeei_contig57383.1.1 vs. uniprot
Match: A0A7W0TUM0_9CHLR (Response regulator transcription factor n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0TUM0_9CHLR)

HSP 1 Score: 91.3 bits (225), Expect = 2.040e-22
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:   13 LVPREREVLGLVAAGLPNKAIAHELGISDHTVKFHVSSLLTKLGAASRTEAVTVATRMGVLSL 201
            L  RE EVL LVA GLPNKAIA ELGIS+HT KFHV SLL KLGA SRTEAVT+ATR GVL++
Sbjct:   43 LTARELEVLALVAEGLPNKAIARELGISEHTAKFHVGSLLGKLGAGSRTEAVTLATRRGVLAI 105
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BLAST of mRNA_P-wetherbeei_contig57383.1.1 vs. uniprot
Match: A0A7V9HIN3_9CHLR (Response regulator transcription factor n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9HIN3_9CHLR)

HSP 1 Score: 93.2 bits (230), Expect = 6.650e-22
Identity = 48/63 (76.19%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:   13 LVPREREVLGLVAAGLPNKAIAHELGISDHTVKFHVSSLLTKLGAASRTEAVTVATRMGVLSL 201
            L  RER+VL LVA+GLPNKAIA ELGIS+HTVKFHV SLL KLGA SRTEAVT+ATR G+L++
Sbjct:  161 LTDRERQVLELVASGLPNKAIARELGISEHTVKFHVGSLLGKLGAGSRTEAVTLATRRGLLTI 223
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BLAST of mRNA_P-wetherbeei_contig57383.1.1 vs. uniprot
Match: A0A7W0ZQ50_9CHLR (Response regulator transcription factor n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0ZQ50_9CHLR)

HSP 1 Score: 89.4 bits (220), Expect = 2.310e-21
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:   13 LVPREREVLGLVAAGLPNKAIAHELGISDHTVKFHVSSLLTKLGAASRTEAVTVATRMGVL 195
            L  RER+VL LVA GLPNKAIA ELGIS+HT KFHV SLL KLGA SRTEAVT+ATR G+L
Sbjct:   68 LTGRERQVLLLVAEGLPNKAIARELGISEHTAKFHVGSLLGKLGAGSRTEAVTLATRRGIL 128
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BLAST of mRNA_P-wetherbeei_contig57383.1.1 vs. uniprot
Match: A0A7V9VG01_9CHLR (Response regulator transcription factor n=2 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VG01_9CHLR)

HSP 1 Score: 90.9 bits (224), Expect = 3.570e-21
Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    4 DGVLVPREREVLGLVAAGLPNKAIAHELGISDHTVKFHVSSLLTKLGAASRTEAVTVATRMGVL 195
            + VL PRE EV+  VA+GLPNKAIA  LGI+DHTVKFHVSS+LTKL AASRTEAV +ATR G+L
Sbjct:  140 EPVLSPREHEVMSHVASGLPNKAIARMLGITDHTVKFHVSSVLTKLNAASRTEAVAIATRGGLL 203
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BLAST of mRNA_P-wetherbeei_contig57383.1.1 vs. uniprot
Match: A0A6L9ILV2_9CHLR (Response regulator transcription factor n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L9ILV2_9CHLR)

HSP 1 Score: 90.9 bits (224), Expect = 4.060e-21
Identity = 45/63 (71.43%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:   13 LVPREREVLGLVAAGLPNKAIAHELGISDHTVKFHVSSLLTKLGAASRTEAVTVATRMGVLSL 201
            L PREREVL L+A GLPNK IA +LGIS+HTVKFHV+++LTKLGA SRTEAV  ATR G+++L
Sbjct:  149 LTPREREVLNLIAEGLPNKTIAAQLGISEHTVKFHVNAILTKLGAQSRTEAVVRATRAGMIAL 211
[Close]
BLAST of mRNA_P-wetherbeei_contig57383.1.1 vs. uniprot
Match: A0A7V9SDX2_9CHLR (Response regulator transcription factor n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9SDX2_9CHLR)

HSP 1 Score: 90.5 bits (223), Expect = 5.490e-21
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:   13 LVPREREVLGLVAAGLPNKAIAHELGISDHTVKFHVSSLLTKLGAASRTEAVTVATRMGVL 195
            L  REREVL LVA GLPNKAIA +LGIS+HT KFHV SLL KLGA SRTEAVT+ATR G+L
Sbjct:  147 LTAREREVLHLVAEGLPNKAIARQLGISEHTAKFHVGSLLGKLGAGSRTEAVTLATRRGIL 207
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57383.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V8VXV4_9CHLR1.220e-2779.10Response regulator transcription factor n=1 Tax=Ch... [more]
A0A7W0PRY0_9CHLR1.240e-2584.13Response regulator transcription factor n=1 Tax=Ch... [more]
A0A7W0AAB1_9CHLR9.710e-2584.13Response regulator transcription factor n=1 Tax=Ch... [more]
A0A7W0KF84_9CHLR1.930e-2480.95Response regulator transcription factor n=1 Tax=Ch... [more]
A0A7W0TUM0_9CHLR2.040e-2276.19Response regulator transcription factor n=1 Tax=Ch... [more]
A0A7V9HIN3_9CHLR6.650e-2276.19Response regulator transcription factor n=1 Tax=Ch... [more]
A0A7W0ZQ50_9CHLR2.310e-2177.05Response regulator transcription factor n=1 Tax=Ch... [more]
A0A7V9VG01_9CHLR3.570e-2173.44Response regulator transcription factor n=2 Tax=Ch... [more]
A0A6L9ILV2_9CHLR4.060e-2171.43Response regulator transcription factor n=1 Tax=Ch... [more]
A0A7V9SDX2_9CHLR5.490e-2177.05Response regulator transcription factor n=1 Tax=Ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57383contigP-wetherbeei_contig57383:5..208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog479434.Sthe_3218
PFAMsGerE
Model size204
Max annot lvl200795|Chloroflexi
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.1e-19
EggNOG OGsCOG2197@1|root,COG2197@2|Bacteria,2G73R@200795|Chloroflexi
DescriptionPFAM regulatory protein LuxR
Cds size204
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186851.1938684-CDS-P-wetherbeei_contig57383:4..2081683186851.1938684-CDS-P-wetherbeei_contig57383:4..208Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57383 5..208 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57383.1.1prot_P-wetherbeei_contig57383.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57383 5..208 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57383.1.1

>prot_P-wetherbeei_contig57383.1.1 ID=prot_P-wetherbeei_contig57383.1.1|Name=mRNA_P-wetherbeei_contig57383.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=68bp
LDGVLVPREREVLGLVAAGLPNKAIAHELGISDHTVKFHVSSLLTKLGAA
SRTEAVTVATRMGVLSL*
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mRNA from alignment at P-wetherbeei_contig57383:5..208+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57383.1.1 ID=mRNA_P-wetherbeei_contig57383.1.1|Name=mRNA_P-wetherbeei_contig57383.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig57383:5..208+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGACGGGGTGCTCGTCCCGCGCGAACGCGAGGTGCTGGGATTGGTCGC
GGCGGGGTTGCCGAACAAGGCGATCGCCCACGAGCTCGGCATCAGCGACC
ACACGGTGAAGTTCCACGTCAGCTCGCTGCTGACGAAACTGGGGGCCGCG
AGCCGCACGGAGGCGGTCACCGTCGCCACGCGGATGGGCGTCCTCTCGCT
GTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57383:5..208+

>mRNA_P-wetherbeei_contig57383.1.1 ID=mRNA_P-wetherbeei_contig57383.1.1|Name=mRNA_P-wetherbeei_contig57383.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig57383:5..208+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGACGGGGTGCTCGTCCCGCGCGAACGCGAGGTGCTGGGATTGGTCGC
GGCGGGGTTGCCGAACAAGGCGATCGCCCACGAGCTCGGCATCAGCGACC
ACACGGTGAAGTTCCACGTCAGCTCGCTGCTGACGAAACTGGGGGCCGCG
AGCCGCACGGAGGCGGTCACCGTCGCCACGCGGATGGGCGTCCTCTCGCT
GTAG
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