mRNA_P-wetherbeei_contig57381.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57381.1.1
Unique NamemRNA_P-wetherbeei_contig57381.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57381.1.1 vs. uniprot
Match: A0A7C4TUZ3_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TUZ3_9HYPH)

HSP 1 Score: 196 bits (499), Expect = 7.410e-62
Identity = 93/135 (68.89%), Postives = 112/135 (82.96%), Query Frame = 1
Query:    1 RIVGLGFRYWMLGLNTGDIGAWEKAWDLYCGLFGTAGAKVAVGQLSHWVSAMESASCRDIEVFPERCRSFCRDECIAVSMIAACQHNTCPAMQACALALLENARVDEMIGKAQAFAGTLASLEHRLSPQSIMITA 405
            R+VGLGFRYWMLGLNTG+I  WEKAW LY GLFG A AKVAVG+L+ WV A+ +ASCRDI V PE C SFCRDECIA++MIAACQH+TCPAM+ACA AL+E++ +D ++ KAQ FA TL++LEHRLS  SI+  A
Sbjct:   26 RVVGLGFRYWMLGLNTGNIRCWEKAWSLYSGLFGAASAKVAVGELASWVGALNTASCRDIAVLPETCASFCRDECIAIAMIAACQHHTCPAMRACAFALIESSMIDGVVCKAQTFADTLSALEHRLSSGSIVAAA 160          
BLAST of mRNA_P-wetherbeei_contig57381.1.1 vs. uniprot
Match: UPI00036281C7 (hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI00036281C7)

HSP 1 Score: 152 bits (384), Expect = 2.470e-44
Identity = 74/142 (52.11%), Postives = 99/142 (69.72%), Query Frame = 1
Query:    1 RIVGLGFRYWMLGLNTGDIGAWEKAWDLYCGLFGTAGAKVAVGQLSHWVSAMESASCRDIEVFPERCRSFCRDECIAVSMIAACQHNTCPAMQACALALLENARVDEMIGKAQAFAGTLASLEHRLSPQSIMITAACPVRGH 426
            R++GLGFRYW+ G  +GDI  WE+AW +Y    G   A+ AV +LS WV A+ +A+ R+IEV    C  FCRDEC+AVSMIAACQHNTCPAM+ACA AL+E++ +DE++  A++FA T+  L+  LSP  I+  AA     H
Sbjct:   29 RLIGLGFRYWVAGYKSGDIDRWEEAWRIYAKALGPNAARTAVSELSAWVRAVSAAARREIEVCSGDCAGFCRDECLAVSMIAACQHNTCPAMRACAFALIESSLIDEVVHHAESFAVTMRGLDQVLSPGLIVNAAAYASASH 170          
BLAST of mRNA_P-wetherbeei_contig57381.1.1 vs. uniprot
Match: V5SI63_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 TaxID=1029756 RepID=V5SI63_9HYPH)

HSP 1 Score: 152 bits (383), Expect = 3.300e-44
Identity = 73/136 (53.68%), Postives = 98/136 (72.06%), Query Frame = 1
Query:    1 RIVGLGFRYWMLGLNTGDIGAWEKAWDLYCGLFGTAGAKVAVGQLSHWVSAMESASCRDIEVFPERCRSFCRDECIAVSMIAACQHNTCPAMQACALALLENARVDEMIGKAQAFAGTLASLEHRLSPQSIMITAA 408
            R++GLGFRYW+ G  +GDI  WE+AW +Y    G   A+ AV +LS WV A+ +A+ R+IEV    C  FCRDEC+AVSMIAACQHNTCPAM+ACA AL+E++ +DE++  A++FA T+  L+  LSP  I+  AA
Sbjct:   27 RLIGLGFRYWVAGYKSGDIDRWEEAWRIYSSALGANAARTAVSELSAWVRAVSAAARREIEVCAGDCAGFCRDECLAVSMIAACQHNTCPAMRACAFALIESSLIDEVVHHAESFAVTMRGLDQVLSPGLIVNAAA 162          
BLAST of mRNA_P-wetherbeei_contig57381.1.1 vs. uniprot
Match: A0A2W4L359_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4L359_9PROT)

HSP 1 Score: 151 bits (382), Expect = 4.970e-44
Identity = 74/141 (52.48%), Postives = 95/141 (67.38%), Query Frame = 1
Query:    1 RIVGLGFRYWMLGLNTGDIGAWEKAWDLYCGLFGTAGAKVAVGQLSHWVSAMESASCRDIEVFPERCRSFCRDECIAVSMIAACQHNTCPAMQACALALLENARVDEMIGKAQAFAGTLASLEHRLSPQSI-MITAACPVR 420
            R+VGLGFR W+ G  TGDI  WE+AW LY    G   A+ AV  L+ WV A+  ASCR IEV+PE+CR FCRDEC+A++M+AA QH  CPA++ACA ALLEN+ +D+++  A+     L S    LSP SI    A CP+R
Sbjct:   29 RLVGLGFRAWLAGYQTGDISCWEEAWSLYSETLGPEQARPAVEDLACWVRAIRKASCRAIEVYPEQCRGFCRDECMAIAMVAASQHGACPALRACAFALLENSAIDDVVEGAECLGARLKSCNKILSPNSICQAVAFCPLR 169          
BLAST of mRNA_P-wetherbeei_contig57381.1.1 vs. uniprot
Match: A0A2W4RPY6_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4RPY6_9PROT)

HSP 1 Score: 151 bits (381), Expect = 7.260e-44
Identity = 72/143 (50.35%), Postives = 99/143 (69.23%), Query Frame = 1
Query:    1 RIVGLGFRYWMLGLNTGDIGAWEKAWDLYCGLFGTAGAKVAVGQLSHWVSAMESASCRDIEVFPERCRSFCRDECIAVSMIAACQHNTCPAMQACALALLENARVDEMIGKAQAFAGTLASLEHRLSPQSIMITAA-CPVRGH 426
            R+VGLGFR W+ G  TGDI  WE+AW++Y    G   A+ A+  L+ WV A+ +ASC+ IEVFP +C  FCRDEC+A++M+AA QH  CPA++ACA AL+E++ +DE++  A+    TL S +  LSP SI   AA CP+R H
Sbjct:   30 RLVGLGFRAWLAGYETGDIRCWEQAWNMYSDALGPTQARAALTDLACWVRAIRNASCKPIEVFPGKCAQFCRDECMAIAMVAASQHGACPALRACAWALIESSAIDEVVEGAECLGATLKSCQKVLSPASICAFAALCPLRPH 172          
BLAST of mRNA_P-wetherbeei_contig57381.1.1 vs. uniprot
Match: UPI000931BCBC (hypothetical protein n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI000931BCBC)

HSP 1 Score: 142 bits (357), Expect = 2.960e-40
Identity = 70/136 (51.47%), Postives = 94/136 (69.12%), Query Frame = 1
Query:    1 RIVGLGFRYWMLGLNTGDIGAWEKAWDLYCGLFGTAGAKVAVGQLSHWVSAMESASCRDIEVFPERCRSFCRDECIAVSMIAACQHNTCPAMQACALALLENARVDEMIGKAQAFAGTLASLEHRLSPQSIMITAA 408
            R++GLGFRYW+ G  +GDI  WE AW +Y    G   A+ AV +LS WV A+ +A+ R+IEV    C  FCRDE +A+SMIAACQHNTCPAM+ACA AL+E++ +DE++  A+ FA T+  L+  L P  I+  AA
Sbjct:   27 RLIGLGFRYWVAGYKSGDIDRWEDAWRIYSHALGPNAARTAVSELSAWVRAVSAAARREIEVRHGDCDGFCRDESLALSMIAACQHNTCPAMRACAFALIESSLIDEVVHHAETFAVTMRGLDQVLPPALIVNAAA 162          
BLAST of mRNA_P-wetherbeei_contig57381.1.1 vs. uniprot
Match: A0A7C2RCJ8_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2RCJ8_9HYPH)

HSP 1 Score: 137 bits (345), Expect = 1.680e-38
Identity = 66/128 (51.56%), Postives = 83/128 (64.84%), Query Frame = 1
Query:    1 RIVGLGFRYWMLGLNTGDIGAWEKAWDLYCGLFGTAGAKVAVGQLSHWVSAMESASCRDIEVFPERCRSFCRDECIAVSMIAACQHNTCPAMQACALALLENARVDEMIGKAQAFAGTLASLEHRLSP 384
            ++VGLGFR+W+ G  TGDI  WE+AW  Y    G A AK AV  LS WV A+   + RD+E +P  C  FCRDECIA+ MIAACQHN CPAM+ACA ALL  + ++E++  A  FA T+      L P
Sbjct:   23 QLVGLGFRFWLTGFRTGDISCWERAWCAYSNALGAAAAKGAVRDLSAWVRAINRHAQRDLETYPADCDRFCRDECIAIDMIAACQHNACPAMRACAFALLGCSLIEEVVQGAGCFAATMRGANQMLPP 150          
BLAST of mRNA_P-wetherbeei_contig57381.1.1 vs. uniprot
Match: A0A6N6SSZ2_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6SSZ2_9HYPH)

HSP 1 Score: 134 bits (338), Expect = 1.760e-37
Identity = 65/128 (50.78%), Postives = 84/128 (65.62%), Query Frame = 1
Query:    1 RIVGLGFRYWMLGLNTGDIGAWEKAWDLYCGLFGTAGAKVAVGQLSHWVSAMESASCRDIEVFPERCRSFCRDECIAVSMIAACQHNTCPAMQACALALLENARVDEMIGKAQAFAGTLASLEHRLSP 384
            R+VGLGFRYW+ G  TGDI  WE+AW  Y    G A AK A+  LS WV A+   + RD+E     C  FCRDEC+A++MIAACQHN CPAM+ACA +LL  + +DE++  A+ FA T+   +  L P
Sbjct:   20 RLVGLGFRYWLAGFRTGDISCWERAWCAYSNALGAAAAKGALTDLSCWVRAINRHAQRDLETAAVDCDRFCRDECVAIAMIAACQHNACPAMRACAFSLLGCSMIDEVVQGAENFAATMRGADQVLLP 147          
BLAST of mRNA_P-wetherbeei_contig57381.1.1 vs. uniprot
Match: A0A0D6JFL3_9HYPH (Uncharacterized protein n=1 Tax=Candidatus Filomicrobium marinum TaxID=1608628 RepID=A0A0D6JFL3_9HYPH)

HSP 1 Score: 134 bits (338), Expect = 2.500e-37
Identity = 63/132 (47.73%), Postives = 92/132 (69.70%), Query Frame = 1
Query:    1 RIVGLGFRYWMLGLNTGDIGAWEKAWDLYCGLFGTAGAKVAVGQLSHWVSAMESASCRDIEVFPERCRSFCRDECIAVSMIAACQHNTCPAMQACALALLENARVDEMIGKAQAFAGTLASLEHRLSPQSIM 396
            ++VG GFR W+ G  TG+IG WE+ W +Y    G   AKV VG+LS W  A+++ + R +EV P    +FCRDEC+A+SMIAA QH TCPAM+ACA AL+E++ ++E++  + +FA T+ SL+  +SP  I+
Sbjct:   33 QLVGFGFRGWIAGYQTGNIGCWERVWQVYSNALGPRAAKVVVGELSVWAKAVKAGARRKVEVGPIEACNFCRDECLAISMIAASQHRTCPAMRACAFALIESSLIEEVVHHSDSFAITMRSLDQVISPNWIV 164          
BLAST of mRNA_P-wetherbeei_contig57381.1.1 vs. uniprot
Match: A0A537REH1_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537REH1_9PROT)

HSP 1 Score: 134 bits (336), Expect = 3.540e-37
Identity = 65/128 (50.78%), Postives = 82/128 (64.06%), Query Frame = 1
Query:    1 RIVGLGFRYWMLGLNTGDIGAWEKAWDLYCGLFGTAGAKVAVGQLSHWVSAMESASCRDIEVFPERCRSFCRDECIAVSMIAACQHNTCPAMQACALALLENARVDEMIGKAQAFAGTLASLEHRLSP 384
            R+VGLGFRYW+ G  TGDI  WE+AW  Y  + G   AK AV  LS WV A+   + RD+E     C  FCRDECIA+ MI+ACQH  CPAM+ACA ALL  + +DE++  A+ FA T+   +  L P
Sbjct:   20 RLVGLGFRYWLKGFRTGDISCWERAWSAYSNVLGATAAKSAVTDLSCWVRAINRHARRDLETAAVDCERFCRDECIAIEMISACQHAACPAMRACAFALLGCSLIDEVVHGAENFAATMRGADQVLPP 147          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57381.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4TUZ3_9HYPH7.410e-6268.89Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
UPI00036281C72.470e-4452.11hypothetical protein n=1 Tax=Hyphomicrobium zavarz... [more]
V5SI63_9HYPH3.300e-4453.68Uncharacterized protein n=1 Tax=Hyphomicrobium nit... [more]
A0A2W4L359_9PROT4.970e-4452.48Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A2W4RPY6_9PROT7.260e-4450.35Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
UPI000931BCBC2.960e-4051.47hypothetical protein n=1 Tax=Hyphomicrobium sp. CS... [more]
A0A7C2RCJ8_9HYPH1.680e-3851.56Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A6N6SSZ2_9HYPH1.760e-3750.78Uncharacterized protein n=1 Tax=Hyphomicrobiaceae ... [more]
A0A0D6JFL3_9HYPH2.500e-3747.73Uncharacterized protein n=1 Tax=Candidatus Filomic... [more]
A0A537REH1_9PROT3.540e-3750.78Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57381contigP-wetherbeei_contig57381:3..443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1267005.KB911256_gene1752
Model size441
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.1e-37
EggNOG OGs2D9BM@1|root,32TSZ@2|Bacteria,1RJ7Z@1224|Proteobacteria,2UAMP@28211|Alphaproteobacteria
Cds size411
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186851.1488192-UTR-P-wetherbeei_contig57381:2..321683186851.1488192-UTR-P-wetherbeei_contig57381:2..32Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig57381 3..32 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186851.1704788-CDS-P-wetherbeei_contig57381:32..4431683186851.1704788-CDS-P-wetherbeei_contig57381:32..443Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57381 33..443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57381.1.1prot_P-wetherbeei_contig57381.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57381 33..443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57381.1.1

>prot_P-wetherbeei_contig57381.1.1 ID=prot_P-wetherbeei_contig57381.1.1|Name=mRNA_P-wetherbeei_contig57381.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
MLGLNTGDIGAWEKAWDLYCGLFGTAGAKVAVGQLSHWVSAMESASCRDI
EVFPERCRSFCRDECIAVSMIAACQHNTCPAMQACALALLENARVDEMIG
KAQAFAGTLASLEHRLSPQSIMITAACPVRGHVTLQ*
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mRNA from alignment at P-wetherbeei_contig57381:3..443+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57381.1.1 ID=mRNA_P-wetherbeei_contig57381.1.1|Name=mRNA_P-wetherbeei_contig57381.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig57381:3..443+ (Phaeothamnion wetherbeei SAG_119_79)
CGTATCGTCGGGTTGGGTTTCCGCTACTGGATGCTCGGTCTCAATACCGG CGACATCGGGGCCTGGGAGAAGGCCTGGGATCTCTATTGCGGCCTGTTCG GCACTGCGGGAGCCAAAGTCGCGGTGGGGCAGTTGTCGCACTGGGTCAGC GCCATGGAGTCCGCCTCGTGCCGCGACATCGAGGTTTTCCCCGAACGGTG CCGTAGCTTCTGCCGCGACGAGTGCATCGCCGTCTCGATGATCGCGGCGT GCCAGCACAACACGTGTCCTGCGATGCAGGCCTGCGCATTGGCCCTGCTG GAGAACGCCCGGGTCGATGAGATGATCGGCAAGGCGCAAGCCTTTGCCGG AACGCTGGCTTCGCTCGAGCACCGGCTTTCACCGCAATCGATCATGATCA CGGCCGCTTGCCCCGTCCGCGGGCACGTCACGCTGCAATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57381:3..443+

>mRNA_P-wetherbeei_contig57381.1.1 ID=mRNA_P-wetherbeei_contig57381.1.1|Name=mRNA_P-wetherbeei_contig57381.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig57381:3..443+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGGTCTCAATACCGGCGACATCGGGGCCTGGGAGAAGGCCTGGGA
TCTCTATTGCGGCCTGTTCGGCACTGCGGGAGCCAAAGTCGCGGTGGGGC
AGTTGTCGCACTGGGTCAGCGCCATGGAGTCCGCCTCGTGCCGCGACATC
GAGGTTTTCCCCGAACGGTGCCGTAGCTTCTGCCGCGACGAGTGCATCGC
CGTCTCGATGATCGCGGCGTGCCAGCACAACACGTGTCCTGCGATGCAGG
CCTGCGCATTGGCCCTGCTGGAGAACGCCCGGGTCGATGAGATGATCGGC
AAGGCGCAAGCCTTTGCCGGAACGCTGGCTTCGCTCGAGCACCGGCTTTC
ACCGCAATCGATCATGATCACGGCCGCTTGCCCCGTCCGCGGGCACGTCA
CGCTGCAATAG
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