mRNA_P-wetherbeei_contig57363.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57363.1.1
Unique NamemRNA_P-wetherbeei_contig57363.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57363.1.1 vs. uniprot
Match: A0A1Q4DBN6_9HYPH (RND transporter n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4DBN6_9HYPH)

HSP 1 Score: 209 bits (532), Expect = 1.230e-62
Identity = 115/169 (68.05%), Postives = 132/169 (78.11%), Query Frame = 1
Query:    1 PKVAEAALPPLDWWRGFRSAELTEIIEQAREANLDIAAAIARIVQADAQARIAGASLLPDISLDASATRSXXXXXXXXXXXXASERNTLTATLGASYEIDFWGKNRAALRAAEQTAVASRYDREVVGLTTVVTAANAYFQVLAAQDRLQVARENQASGRRVPDRSRQHV 507
            P VAEAALP LDWWR FRS ELT+IIE+AREANLDIAAAIARIVQADAQAR++GA+LLP +SLD S TRS            ASER   +A+L  SYEIDFWGKNRAALR+AE++AVA+R+DR+VV LTT+  AANAYFQVLAAQDRL  AR N  S +RV D  RQ +
Sbjct:   52 PAVAEAALPRLDWWRSFRSRELTQIIEEAREANLDIAAAIARIVQADAQARVSGAALLPTVSLDGSGTRSRSSQSTGTGVGGASERGLYSASLSGSYEIDFWGKNRAALRSAEESAVATRFDRDVVTLTTMAAAANAYFQVLAAQDRLATARRNITSAQRVLDLIRQRL 220          
BLAST of mRNA_P-wetherbeei_contig57363.1.1 vs. uniprot
Match: UPI001FF0258F (efflux transporter outer membrane subunit n=1 Tax=Pseudolabrys sp. FHR47 TaxID=2562284 RepID=UPI001FF0258F)

HSP 1 Score: 207 bits (528), Expect = 4.830e-62
Identity = 115/169 (68.05%), Postives = 135/169 (79.88%), Query Frame = 1
Query:    1 PKVAEAALPPLDWWRGFRSAELTEIIEQAREANLDIAAAIARIVQADAQARIAGASLLPDISLDASATRSXXXXXXXXXXXXASERNTLTATLGASYEIDFWGKNRAALRAAEQTAVASRYDREVVGLTTVVTAANAYFQVLAAQDRLQVARENQASGRRVPDRSRQHV 507
            PK+AEAALP LDWWRGFRS ELTEI+EQ+ EANLDIAAAIARIVQADAQ+RI+GA LLP +SL + A+RS            A + N+L+A+L ASYE+DFWGKNRA+LR+AEQ+AVA+RYDREVV L+TV +AANAYFQVLAAQDRL  AR N AS  RV D  +Q V
Sbjct:   52 PKIAEAALPKLDWWRGFRSRELTEIVEQSLEANLDIAAAIARIVQADAQSRISGAPLLPSVSLSSDASRSRSSRSVTPT---ARDTNSLSASLTASYELDFWGKNRASLRSAEQSAVAARYDREVVALSTVASAANAYFQVLAAQDRLAAARNNLASANRVLDLIKQRV 217          
BLAST of mRNA_P-wetherbeei_contig57363.1.1 vs. uniprot
Match: A0A0Q7TLS9_9HYPH (RND transporter n=1 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7TLS9_9HYPH)

HSP 1 Score: 204 bits (518), Expect = 1.380e-60
Identity = 114/176 (64.77%), Postives = 132/176 (75.00%), Query Frame = 1
Query:    1 PKVAEAALPPLDWWRGFRSAELTEIIEQAREANLDIAAAIARIVQADAQARIAGASLLPDISLDASATRSXXXXXXXXXXXXA-------SERNTLTATLGASYEIDFWGKNRAALRAAEQTAVASRYDREVVGLTTVVTAANAYFQVLAAQDRLQVARENQASGRRVPDRSRQHV 507
            P++AEAALP LDWWRGFRS ELTEI+EQARE+NLDIAAAI+R++QADA +R+AGA+LLP I  +  A RS            A          NTLTA+L ASYEIDFWGKNRAALRA EQTAVASR+DREVV L+T+ TAAN+YFQVLAAQDRL+VAR N A+  RV    RQ V
Sbjct:   38 PQIAEAALPKLDWWRGFRSRELTEIVEQARESNLDIAAAISRVIQADANSRVAGAALLPAIDFNGDAARSQASKTTGLGNGAAFVDNSGFRVSNTLTASLSASYEIDFWGKNRAALRALEQTAVASRFDREVVTLSTIATAANSYFQVLAAQDRLRVARSNLAAAERVLSLIRQRV 213          
BLAST of mRNA_P-wetherbeei_contig57363.1.1 vs. uniprot
Match: A0A371B819_9HYPH (RND transporter n=2 Tax=Pseudolabrys sp. GY_H TaxID=2292256 RepID=A0A371B819_9HYPH)

HSP 1 Score: 202 bits (514), Expect = 8.410e-60
Identity = 113/168 (67.26%), Postives = 129/168 (76.79%), Query Frame = 1
Query:    1 PKVAEAALPPLDWWRGFRSAELTEIIEQAREANLDIAAAIARIVQADAQARIAGASLLPDISLDASATRSXXXXXXXXXXXXA-------SERNTLTATLGASYEIDFWGKNRAALRAAEQTAVASRYDREVVGLTTVVTAANAYFQVLAAQDRLQVARENQASGRRV 483
            PK+AEAALP LDWWRGFRS ELT+I+EQAREANLDIAAAIARIVQADAQ+RI GA+LLP I L+ +A+RS                       NTL ATL ASYEIDFWGKNRAALR+ EQTAVASR+DR+VV L+T+ TAAN+YFQVLAAQDRL+ AR N A+  RV
Sbjct:   59 PKIAEAALPTLDWWRGFRSRELTDIVEQAREANLDIAAAIARIVQADAQSRIVGAALLPAIDLNGNASRSQASKTTGLGNGQPFVDNNGFRVSNTLNATLSASYEIDFWGKNRAALRSFEQTAVASRFDRDVVTLSTIATAANSYFQVLAAQDRLRAARNNLAAAERV 226          
BLAST of mRNA_P-wetherbeei_contig57363.1.1 vs. uniprot
Match: A0A345ZY20_9HYPH (RND transporter n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZY20_9HYPH)

HSP 1 Score: 190 bits (483), Expect = 2.110e-55
Identity = 106/167 (63.47%), Postives = 127/167 (76.05%), Query Frame = 1
Query:    4 KVAEAALPPLDWWRGFRSAELTEIIEQAREANLDIAAAIARIVQADAQARIAGASLLPDISLDASATRSXXXXXXXXXXXXA-------SERNTLTATLGASYEIDFWGKNRAALRAAEQTAVASRYDREVVGLTTVVTAANAYFQVLAAQDRLQVARENQASGRRV 483
            KVAEA+LP LDWWRGFRS ELTEI+E+AR+ANLDIAAA+ARIVQADA +RIAGA+LLP I  +  A R+                       NT++ATL ASYEIDFWGKNRAALR+ E++A ASR+DR+VV L+TV TAAN+YFQVLAAQDRL+VAR N A+ +RV
Sbjct:   41 KVAEASLPSLDWWRGFRSRELTEIVEEARDANLDIAAAVARIVQADANSRIAGAALLPAIDFNGDAARNQASKTTGLGNGQPFVDNSGFRVSNTVSATLTASYEIDFWGKNRAALRSFEESAAASRFDRDVVTLSTVATAANSYFQVLAAQDRLRVARNNLAAAQRV 207          
BLAST of mRNA_P-wetherbeei_contig57363.1.1 vs. uniprot
Match: A0A6L5FJB7_9HYPH (Efflux transporter outer membrane subunit n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FJB7_9HYPH)

HSP 1 Score: 179 bits (454), Expect = 5.530e-51
Identity = 100/168 (59.52%), Postives = 117/168 (69.64%), Query Frame = 1
Query:    7 VAEAALPPLDWWRGFRSAELTEIIEQAREANLDIAAAIARIVQADAQARIAGASLLPDISLDASATRSXXXXXXXXXXXX---------ASERNTLTATLGASYEIDFWGKNRAALRAAEQTAVASRYDREVVGLTTVVTAANAYFQVLAAQDRLQVARENQASGRRV 483
             +  ALP  +WWRGFRS ELT +IE+A  ANLDIAAAIAR++QADAQAR+AGA LLPD++L  SA+RS                      +ERN     L ASYEIDFWGKNRA LRAAE+TAV++R+DREVV LT +   ANAYFQVLAAQDRL+ AREN  S  RV
Sbjct:   55 TSRIALPKANWWRGFRSRELTGLIEEAELANLDIAAAIARVIQADAQARVAGAPLLPDVNLSGSASRSRASRATGTRLGGDGGPAERNQPAERNQFVGRLSASYEIDFWGKNRAMLRAAEETAVSTRFDREVVALTAMAAVANAYFQVLAAQDRLRYARENITSANRV 222          
BLAST of mRNA_P-wetherbeei_contig57363.1.1 vs. uniprot
Match: A0A363TNG1_9BRAD (RND transporter n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A363TNG1_9BRAD)

HSP 1 Score: 176 bits (445), Expect = 6.820e-50
Identity = 97/153 (63.40%), Postives = 113/153 (73.86%), Query Frame = 1
Query:   25 PPLDWWRGFRSAELTEIIEQAREANLDIAAAIARIVQADAQARIAGASLLPDISLDASATRSXXXXXXXXXXXXASERNTLTATLGASYEIDFWGKNRAALRAAEQTAVASRYDREVVGLTTVVTAANAYFQVLAAQDRLQVARENQASGRRV 483
            P LDWWRGFRSAELT ++E+A+  +LDIAAA+ARI QADAQ RI GA LLP I LDASA+R+             SER T  A L ASYEIDFWGKNRAA RAA Q A+ASR+DR+ V L+TV T AN Y Q+LAAQDRL++AREN A+  RV
Sbjct:   52 PALDWWRGFRSAELTRLVERAQAMSLDIAAAVARIEQADAQTRITGAPLLPLIDLDASASRARAG---------GSERGTYNAVLNASYEIDFWGKNRAAHRAAGQLAIASRFDRDTVALSTVATVANTYLQILAAQDRLRIARENLANANRV 195          
BLAST of mRNA_P-wetherbeei_contig57363.1.1 vs. uniprot
Match: A0A327L4L2_9HYPH (RND transporter n=1 Tax=Rhodoplanes roseus TaxID=29409 RepID=A0A327L4L2_9HYPH)

HSP 1 Score: 173 bits (438), Expect = 9.760e-49
Identity = 94/158 (59.49%), Postives = 120/158 (75.95%), Query Frame = 1
Query:   10 AEAALPPLDWWRGFRSAELTEIIEQAREANLDIAAAIARIVQADAQARIAGASLLPDISLDASATRSXXXXXXXXXXXXASERNTLTATLGASYEIDFWGKNRAALRAAEQTAVASRYDREVVGLTTVVTAANAYFQVLAAQDRLQVARENQASGRRV 483
            AEA  PPLDWWRGFRS ELT ++E+A+ +NLDIAAA+ARIVQADAQAR+ G++LLP++S   SATR+             SERN+ T  L ASYE+DFWGKNRA+L AA+++AVASR+DR+ V LT +    NAYFQ+LAAQDRL++AR N A+  R+
Sbjct:   57 AEAG-PPLDWWRGFRSRELTVLMEEAQTSNLDIAAAVARIVQADAQARVTGSALLPNLSGAGSATRTRTAGASTSSGV-GSERNSYTTYLTASYELDFWGKNRASLLAAQESAVASRFDRDTVALTAMANVGNAYFQLLAAQDRLRIARANLAAANRI 212          
BLAST of mRNA_P-wetherbeei_contig57363.1.1 vs. uniprot
Match: A0A537NCW9_9PROT (Efflux transporter outer membrane subunit n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NCW9_9PROT)

HSP 1 Score: 170 bits (431), Expect = 1.860e-47
Identity = 99/176 (56.25%), Postives = 119/176 (67.61%), Query Frame = 1
Query:   10 AEAALPPLDWWRGFRSAELTEIIEQAREANLDIAAAIARIVQADAQARIAGASLLPDISLDASATRSXXXXXXXXXXXXASE------------------RNTLTATLGASYEIDFWGKNRAALRAAEQTAVASRYDREVVGLTTVVTAANAYFQVLAAQDRLQVARENQASGRRV 483
            +EAALPPL+WWRGFRSAELT+++EQA  AN DIAAA+ARIVQADAQARIAGA+LLP I+  ASA RS           X                     R   TA L ASY++DFWGK RA +RAA+ +A+ASR+DREVV L+T+VT A+ YF VL  QDRL+VAREN  S  R+
Sbjct:   60 SEAALPPLEWWRGFRSAELTDLMEQASAANFDIAAAVARIVQADAQARIAGAALLPSINATASAQRSKSSQAVFGGASXXXXXXXXXXXXXXXXXXXXXARTLYTAALNASYQLDFWGKVRAQIRAADYSALASRFDREVVALSTLVTVADTYFLVLEGQDRLRVARENLTSSERI 235          
BLAST of mRNA_P-wetherbeei_contig57363.1.1 vs. uniprot
Match: A0A521W1F0_9HYPH (Efflux transporter outer membrane subunit n=1 Tax=Xanthobacteraceae bacterium TaxID=2021379 RepID=A0A521W1F0_9HYPH)

HSP 1 Score: 169 bits (429), Expect = 2.330e-47
Identity = 95/169 (56.21%), Postives = 118/169 (69.82%), Query Frame = 1
Query:    1 PKVAEAALPPLDWWRGFRSAELTEIIEQAREANLDIAAAIARIVQADAQARIAGASLLPDISLDASATRSXXXXXXXXXXXXASERNTLTATLGASYEIDFWGKNRAALRAAEQTAVASRYDREVVGLTTVVTAANAYFQVLAAQDRLQVARENQASGRRVPDRSRQHV 507
            P+ A AA P LDWWR FRS+ELT ++E+AR  N DIAAA ARI+QADAQARIAGA LLP ++ +A+ T               +   T TA L ASYEIDFWGKN  A  AA +TA ASR+D +V+GLTT+ T AN+YFQ+LAAQDRL++AR N AS +R+ D  +Q V
Sbjct:   49 PEAARAAPPALDWWRDFRSSELTALMEEARRVNFDIAAARARILQADAQARIAGAPLLPALNAEANVTSVKSSVNAGGSGRTVT---TYTAGLSASYEIDFWGKNHDAALAAVETATASRFDHDVIGLTTLATVANSYFQMLAAQDRLRIARNNIASAKRIYDAIKQRV 214          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57363.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Q4DBN6_9HYPH1.230e-6268.05RND transporter n=1 Tax=Rhizobiales bacterium 64-1... [more]
UPI001FF0258F4.830e-6268.05efflux transporter outer membrane subunit n=1 Tax=... [more]
A0A0Q7TLS9_9HYPH1.380e-6064.77RND transporter n=1 Tax=Pseudolabrys sp. Root1462 ... [more]
A0A371B819_9HYPH8.410e-6067.26RND transporter n=2 Tax=Pseudolabrys sp. GY_H TaxI... [more]
A0A345ZY20_9HYPH2.110e-5563.47RND transporter n=1 Tax=Pseudolabrys taiwanensis T... [more]
A0A6L5FJB7_9HYPH5.530e-5159.52Efflux transporter outer membrane subunit n=1 Tax=... [more]
A0A363TNG1_9BRAD6.820e-5063.40RND transporter n=1 Tax=Bradyrhizobiaceae bacteriu... [more]
A0A327L4L2_9HYPH9.760e-4959.49RND transporter n=1 Tax=Rhodoplanes roseus TaxID=2... [more]
A0A537NCW9_9PROT1.860e-4756.25Efflux transporter outer membrane subunit n=2 Tax=... [more]
A0A521W1F0_9HYPH2.330e-4756.21Efflux transporter outer membrane subunit n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57363contigP-wetherbeei_contig57363:2..511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog316058.RPB_2903
Preferred nameMA20_30040
PFAMsOEP
Model size510
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.3e-48
EggNOG OGsCOG1538@1|root,COG1538@2|Bacteria,1MUA8@1224|Proteobacteria,2TSN8@28211|Alphaproteobacteria,3JQRY@41294|Bradyrhizobiaceae
DescriptionOuter membrane efflux protein
Cds size510
COG categoryMU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186850.9529452-CDS-P-wetherbeei_contig57363:1..5111683186850.9529452-CDS-P-wetherbeei_contig57363:1..511Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57363 2..511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57363.1.1prot_P-wetherbeei_contig57363.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57363 2..511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57363.1.1

>prot_P-wetherbeei_contig57363.1.1 ID=prot_P-wetherbeei_contig57363.1.1|Name=mRNA_P-wetherbeei_contig57363.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
PKVAEAALPPLDWWRGFRSAELTEIIEQAREANLDIAAAIARIVQADAQA
RIAGASLLPDISLDASATRSRASQSTGTGGGGASERNTLTATLGASYEID
FWGKNRAALRAAEQTAVASRYDREVVGLTTVVTAANAYFQVLAAQDRLQV
ARENQASGRRVPDRSRQHVH
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mRNA from alignment at P-wetherbeei_contig57363:2..511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57363.1.1 ID=mRNA_P-wetherbeei_contig57363.1.1|Name=mRNA_P-wetherbeei_contig57363.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig57363:2..511+ (Phaeothamnion wetherbeei SAG_119_79)
CCCAAGGTAGCCGAAGCGGCGTTGCCGCCGCTCGACTGGTGGCGCGGCTT TCGCTCGGCCGAACTGACCGAGATCATCGAACAGGCGCGCGAAGCCAATC TCGATATCGCCGCCGCCATTGCCCGCATCGTGCAGGCCGACGCGCAGGCG CGCATCGCCGGCGCTTCGCTGCTGCCCGACATTTCGCTGGACGCTTCCGC CACGCGCTCGCGCGCCTCGCAGAGCACCGGCACGGGCGGCGGCGGTGCGT CGGAACGCAATACGCTGACCGCCACGCTCGGCGCCAGCTACGAGATCGAT TTCTGGGGCAAGAACCGCGCGGCTTTGCGCGCCGCCGAACAGACCGCCGT CGCCAGCCGGTACGACCGCGAAGTGGTCGGGCTCACCACCGTGGTGACCG CAGCCAATGCCTATTTCCAGGTGCTGGCGGCGCAGGACCGGCTGCAAGTG GCGCGCGAGAACCAGGCCAGCGGCAGGCGCGTACCTGACCGCAGCCGGCA GCACGTCCAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57363:2..511+

>mRNA_P-wetherbeei_contig57363.1.1 ID=mRNA_P-wetherbeei_contig57363.1.1|Name=mRNA_P-wetherbeei_contig57363.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig57363:2..511+ (Phaeothamnion wetherbeei SAG_119_79)
CCCAAGGTAGCCGAAGCGGCGTTGCCGCCGCTCGACTGGTGGCGCGGCTT
TCGCTCGGCCGAACTGACCGAGATCATCGAACAGGCGCGCGAAGCCAATC
TCGATATCGCCGCCGCCATTGCCCGCATCGTGCAGGCCGACGCGCAGGCG
CGCATCGCCGGCGCTTCGCTGCTGCCCGACATTTCGCTGGACGCTTCCGC
CACGCGCTCGCGCGCCTCGCAGAGCACCGGCACGGGCGGCGGCGGTGCGT
CGGAACGCAATACGCTGACCGCCACGCTCGGCGCCAGCTACGAGATCGAT
TTCTGGGGCAAGAACCGCGCGGCTTTGCGCGCCGCCGAACAGACCGCCGT
CGCCAGCCGGTACGACCGCGAAGTGGTCGGGCTCACCACCGTGGTGACCG
CAGCCAATGCCTATTTCCAGGTGCTGGCGGCGCAGGACCGGCTGCAAGTG
GCGCGCGAGAACCAGGCCAGCGGCAGGCGCGTACCTGACCGCAGCCGGCA
GCACGTCCAT
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