mRNA_P-wetherbeei_contig5736.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5736.3.1
Unique NamemRNA_P-wetherbeei_contig5736.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5736.3.1 vs. uniprot
Match: D7FXN4_ECTSI (Sar1A, Ras superfamily GTPase n=4 Tax=PX clade TaxID=569578 RepID=D7FXN4_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.530e-8
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 3 
Query:    3 LHMLKENRVQAHQPTIHPNQDELIVGKVR 89
            LHMLKENRVQ HQPT+HPNQDELIVGKVR
Sbjct:   37 LHMLKENRVQVHQPTLHPNQDELIVGKVR 65
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BLAST of mRNA_P-wetherbeei_contig5736.3.1 vs. uniprot
Match: A0A7S2V1B9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1B9_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.200e-8
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 3 
Query:    3 LHMLKENRVQAHQPTIHPNQDELIVGKVR 89
            LHMLKENRVQ H+PT+HPNQDELIVGKVR
Sbjct:   37 LHMLKENRVQVHEPTLHPNQDELIVGKVR 65
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BLAST of mRNA_P-wetherbeei_contig5736.3.1 vs. uniprot
Match: K8YVP7_NANGC (GTP-binding protein SAR1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YVP7_NANGC)

HSP 1 Score: 58.2 bits (139), Expect = 1.290e-7
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 3 
Query:    3 LHMLKENRVQAHQPTIHPNQDELIVGKVR 89
            LHMLKENRVQ HQPTIHPN DELI+GK+R
Sbjct:   47 LHMLKENRVQVHQPTIHPNTDELIIGKIR 75
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BLAST of mRNA_P-wetherbeei_contig5736.3.1 vs. uniprot
Match: F0YAQ6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAQ6_AURAN)

HSP 1 Score: 57.4 bits (137), Expect = 2.260e-7
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 3 
Query:    3 LHMLKENRVQAHQPTIHPNQDELIVGKVR 89
            LHMLKENRVQ HQPT+HPNQDELI+G +R
Sbjct:   37 LHMLKENRVQIHQPTLHPNQDELIIGNIR 65
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BLAST of mRNA_P-wetherbeei_contig5736.3.1 vs. uniprot
Match: A0A7S1U8E4_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8E4_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.910e-6
Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 3 
Query:    3 LHMLKENRVQAHQPTIHPNQDELIVGKVR 89
            LHMLKENRVQ H+PT+HPNQDELIV  +R
Sbjct:   64 LHMLKENRVQVHEPTLHPNQDELIVNNIR 92
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BLAST of mRNA_P-wetherbeei_contig5736.3.1 vs. uniprot
Match: A0A7S2FAC6_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FAC6_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.810e-6
Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 3 
Query:    3 LHMLKENRVQAHQPTIHPNQDELIVGKVR 89
            LHMLKE+RVQ H PTIHPNQDELI+G +R
Sbjct:  101 LHMLKESRVQVHSPTIHPNQDELIIGNIR 129
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BLAST of mRNA_P-wetherbeei_contig5736.3.1 vs. uniprot
Match: A0A7S2LHQ1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LHQ1_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 7.340e-6
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 3 
Query:    3 LHMLKENRVQAHQPTIHPNQDELIVGKVR 89
            LHMLKENRVQ H PT+HPN DELI+GK++
Sbjct:   57 LHMLKENRVQVHVPTLHPNTDELIIGKIK 85
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BLAST of mRNA_P-wetherbeei_contig5736.3.1 vs. uniprot
Match: B8BUA4_THAPS (Arf-type small G protein n=5 Tax=Bacillariophyta TaxID=2836 RepID=B8BUA4_THAPS)

HSP 1 Score: 53.1 bits (126), Expect = 8.180e-6
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 3 
Query:    3 LHMLKENRVQAHQPTIHPNQDELIVGKVR 89
            LHMLKENRVQAH PT+HPN DELIVG+++
Sbjct:   37 LHMLKENRVQAHVPTLHPNTDELIVGQLK 65
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BLAST of mRNA_P-wetherbeei_contig5736.3.1 vs. uniprot
Match: B7FXX2_PHATC (Predicted protein n=7 Tax=Bacillariophyta TaxID=2836 RepID=B7FXX2_PHATC)

HSP 1 Score: 51.6 bits (122), Expect = 3.020e-5
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 3 
Query:    3 LHMLKENRVQAHQPTIHPNQDELIVGKVR 89
            LHMLKENRVQ H PT+HPN DELI+G ++
Sbjct:   37 LHMLKENRVQVHVPTLHPNTDELIIGNIK 65
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BLAST of mRNA_P-wetherbeei_contig5736.3.1 vs. uniprot
Match: A0A1E7FLB6_9STRA (Small GTP-binding protein sar1 n=3 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FLB6_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.050e-5
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 3 
Query:    3 LHMLKENRVQAHQPTIHPNQDELIVGKVR 89
            LHMLKENRVQ H PT+HPN DELI+G ++
Sbjct:   39 LHMLKENRVQVHVPTLHPNTDELIIGNIK 67
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5736.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FXN4_ECTSI1.530e-893.10Sar1A, Ras superfamily GTPase n=4 Tax=PX clade Tax... [more]
A0A7S2V1B9_9STRA4.200e-889.66Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K8YVP7_NANGC1.290e-786.21GTP-binding protein SAR1 n=3 Tax=Monodopsidaceae T... [more]
F0YAQ6_AURAN2.260e-782.76Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S1U8E4_9STRA2.910e-679.31Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2FAC6_9STRA3.810e-679.31Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
A0A7S2LHQ1_9STRA7.340e-675.86Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
B8BUA4_THAPS8.180e-679.31Arf-type small G protein n=5 Tax=Bacillariophyta T... [more]
B7FXX2_PHATC3.020e-572.41Predicted protein n=7 Tax=Bacillariophyta TaxID=28... [more]
A0A1E7FLB6_9STRA3.050e-572.41Small GTP-binding protein sar1 n=3 Tax=Bacillariac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5736contigP-wetherbeei_contig5736:3312..3727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FXN4
PFAMsArf
Model size416
Max annot lvl2759|Eukaryota
KEGG koko:K07953
KEGG Pathwayko04141,ko05134,map04141,map05134
KEGG ModuleM00404
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005798,GO:0006810,GO:0006888,GO:0006900,GO:0006996,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0012507,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0022607,GO:0030117,GO:0030120,GO:0030127,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0034622,GO:0035459,GO:0043226,GO:0043227,GO:0043229,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0048194,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051668,GO:0061024,GO:0065003,GO:0071840,GO:0090110,GO:0090114,GO:0097708,GO:0098588,GO:0098796,GO:0098805
Exons1
Evalue5.56e-08
EggNOG OGsKOG0077@1|root,KOG0077@2759|Eukaryota
Descriptionintracellular protein transport
Cds size324
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000,ko04031,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186850.9046574-UTR-P-wetherbeei_contig5736:3311..33191683186850.9046574-UTR-P-wetherbeei_contig5736:3311..3319Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5736 3312..3319 +
1683186850.9231977-UTR-P-wetherbeei_contig5736:3643..37271683186850.9231977-UTR-P-wetherbeei_contig5736:3643..3727Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5736 3644..3727 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186850.9147394-CDS-P-wetherbeei_contig5736:3319..36431683186850.9147394-CDS-P-wetherbeei_contig5736:3319..3643Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5736 3320..3643 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5736.3.1prot_P-wetherbeei_contig5736.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5736 3320..3643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5736.3.1

>prot_P-wetherbeei_contig5736.3.1 ID=prot_P-wetherbeei_contig5736.3.1|Name=mRNA_P-wetherbeei_contig5736.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp
MLKENRVQAHQPTIHPNQDELIVGKVRSSSCRSHRQPIRPIFGSFIAPLF
RAKHFEAFSPSHAPFLAQIPTMPPTFSPSFAGRTSSVCAPSVFLTATFFG
HRLINNS*
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mRNA from alignment at P-wetherbeei_contig5736:3312..3727+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5736.3.1 ID=mRNA_P-wetherbeei_contig5736.3.1|Name=mRNA_P-wetherbeei_contig5736.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=416bp|location=Sequence derived from alignment at P-wetherbeei_contig5736:3312..3727+ (Phaeothamnion wetherbeei SAG_119_79)
TCCTGCATATGCTTAAGGAGAACCGCGTCCAGGCCCACCAACCGACAATT
CATCCCAACCAGGACGAGCTTATTGTAGGAAAGGTGCGCTCGTCCAGTTG
CCGTTCCCACCGCCAGCCGATCCGTCCGATCTTTGGCAGTTTCATCGCCC
CTCTTTTCCGGGCCAAGCACTTTGAGGCTTTCTCCCCTTCTCACGCCCCC
TTTTTGGCCCAAATACCGACAATGCCACCGACCTTTTCCCCGTCTTTCGC
CGGGCGAACATCTAGCGTTTGTGCGCCGTCCGTCTTCCTCACGGCGACTT
TTTTCGGCCATCGTCTAATTAACAACTCTTAACTCTTGCAATCTCTGCCC
GACCTAATTCAAATCAAGACGAAACTGAAACCGAAAATCTGCCCCAGAAA
AAAAGAAACCGCAATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5736:3312..3727+

>mRNA_P-wetherbeei_contig5736.3.1 ID=mRNA_P-wetherbeei_contig5736.3.1|Name=mRNA_P-wetherbeei_contig5736.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig5736:3312..3727+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTAAGGAGAACCGCGTCCAGGCCCACCAACCGACAATTCATCCCAA
CCAGGACGAGCTTATTGTAGGAAAGGTGCGCTCGTCCAGTTGCCGTTCCC
ACCGCCAGCCGATCCGTCCGATCTTTGGCAGTTTCATCGCCCCTCTTTTC
CGGGCCAAGCACTTTGAGGCTTTCTCCCCTTCTCACGCCCCCTTTTTGGC
CCAAATACCGACAATGCCACCGACCTTTTCCCCGTCTTTCGCCGGGCGAA
CATCTAGCGTTTGTGCGCCGTCCGTCTTCCTCACGGCGACTTTTTTCGGC
CATCGTCTAATTAACAACTCTTAA
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